Rh2BG255000

Calmodulin-binding transcription activator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0009645
Physical Location & Seq
Reverse (-)
26378156 .. 26392221
14066 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG255000.1

Sequence Viewer

Length: 582 bp
ATGAGTGAAGAACTGCAAGATGTGGATGAGCCACAAATGCAGTCCGAATCTGAGGCCTATTGGGATACTGTTCAAAGTGAGAATGAGGTTGACGACTCCAGTGTTCCCCTCCAAGTATGCTTAGATTGCTATATGCTGGGGCCTTCTCTTTCTCATGACCAGCTCTTTAGCATTGTTGATTTCTCACCAAACTGGGCATATGAATACTCTGAAATCAAGGTGCTGAATAGTTCAGAAGGGACATCAGCTTGTATGGATGATGACCTCATAGACATTGAAGCGTTGTTCGATGATGACATTTGCATGCCTACAGCAGCTTCATGGATAGTTTCTTTGCTAGTTTTTGCTCGGATGGCTGGAGGAGTAGAGGCGTTGCATTGTTACTATGCCCATGGAGAAGAAAATGAAAATTTCCAAAGACGCTGTTATTGGATGATTGAAAAGCCGGCGTCTCTCGCACATAGTGCGTCTCTCGCACATAGTGCTGGTCCACATAGGCCGGCGTCTCTCGCACATAGTGCTGGTCCACTACTAGTAGAGGTTACGCATCCTCAGTACTATCATCTCGGTGTTCCCATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000981 GO:0000982 GO:0001077 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010150 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0031349 GO:0032501 GO:0032502 GO:0032774 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070417 GO:0071704 GO:0080090 GO:0080134 GO:0090304 GO:0090693 GO:0097159 GO:0097659 GO:0098542 GO:0099402 GO:0140110 GO:1900367 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:2000068 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 CG-1 IQ TIG

Protein Analysis

193

Amino Acids

21.49

Weight (kDa)

4.21

Isoelectric Point (pI)

57.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CG-1 PF03859 120 - 149 2e-09 CG-1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 409
AcyI GRCGYC 2 cut(s) 449, 503
AdeI CACNNNGTG 3 cut(s) 464, 482, 518
AfaI GTAC 1 cut(s) 557
AgsI TTSAA 3 cut(s) 74, 278, 440
AhlI ACTAGT 1 cut(s) 532
AluBI AGCT 3 cut(s) 163, 248, 317
AluI AGCT 3 cut(s) 163, 248, 317
Alw26I GTCTC 3 cut(s) 456, 474, 510
AoxI GGCC 3 cut(s) 54, 140, 497
ApeKI GCWGC 1 cut(s) 314
ApoI RAATTY 1 cut(s) 409
AspS9I GGNCC 3 cut(s) 140, 488, 524
AsuHPI GGTGA 1 cut(s) 177
AvaII GGWCC 2 cut(s) 488, 524
BbvI GCAGC 1 cut(s) 326
BccI CCATC 1 cut(s) 346
BciVI GTATCC 1 cut(s) 58
BcoDI GTCTC 3 cut(s) 456, 474, 510
BcuI ACTAGT 1 cut(s) 532
BfaI CTAG 2 cut(s) 338, 533
BfmI CTRYAG 1 cut(s) 309
BfuI GTATCC 1 cut(s) 58
BisI GCNGC 1 cut(s) 315
BlsI GCNGC 1 cut(s) 316
BmcAI AGTACT 1 cut(s) 557
Bme18I GGWCC 2 cut(s) 488, 524
BmgT120I GGNCC 3 cut(s) 140, 488, 524
BmiI GGNNCC 1 cut(s) 141
BmrI ACTGGG 1 cut(s) 202
BmsI GCATC 1 cut(s) 556
BmuI ACTGGG 1 cut(s) 202
BpmI CTGGAG 2 cut(s) 82, 378
BsaHI GRCGYC 2 cut(s) 449, 503
BsaJI CCNNGG 1 cut(s) 391
Bse118I RCCGGY 2 cut(s) 445, 499
Bse1I ACTGG 2 cut(s) 99, 197
BseDI CCNNGG 1 cut(s) 391
BseGI GGATG 5 cut(s) 31, 262, 357, 438, 547
BseMII CTCAG 2 cut(s) 42, 566
BseNI ACTGG 2 cut(s) 99, 197
BseRI GAGGAG 1 cut(s) 375
BseXI GCAGC 1 cut(s) 326
BseYI CCCAGC 1 cut(s) 136
BshFI GGCC 3 cut(s) 56, 142, 499
BsiSI CCGG 2 cut(s) 446, 500
BslFI GGGAC 1 cut(s) 253
BsmAI GTCTC 3 cut(s) 456, 474, 510
BsmBI CGTCTC 3 cut(s) 456, 474, 510
BsmFI GGGAC 1 cut(s) 253
BsnI GGCC 3 cut(s) 56, 142, 499
Bsp19I CCATGG 1 cut(s) 391
BspANI GGCC 3 cut(s) 56, 142, 499
BspCNI CTCAG 2 cut(s) 43, 565
BspHI TCATGA 1 cut(s) 154
BspLI GGNNCC 1 cut(s) 141
BsrFI RCCGGY 2 cut(s) 445, 499
BsrI ACTGG 2 cut(s) 99, 197
BssAI RCCGGY 2 cut(s) 445, 499
BssECI CCNNGG 1 cut(s) 391
BssNI GRCGYC 2 cut(s) 449, 503
BssT1I CCWWGG 1 cut(s) 391
Bst4CI ACNGT 1 cut(s) 70
BstACI GRCGYC 2 cut(s) 449, 503
BstAPI GCANNNNNTGC 3 cut(s) 464, 482, 518
BstC8I GCNNGC 3 cut(s) 305, 447, 501
BstDEI CTNAG 3 cut(s) 51, 121, 552
BstDSI CCRYGG 1 cut(s) 391
BstF5I GGATG 5 cut(s) 31, 262, 357, 438, 547
BstMAI GTCTC 3 cut(s) 456, 474, 510
BstMWI GCNNNNNNNGC 9 cut(s) 37, 126, 353, 455, 464, 473, 482, 509, 518
BstNSI RCATGY 1 cut(s) 307
BstSFI CTRYAG 1 cut(s) 309
BstV1I GCAGC 1 cut(s) 326
BsuI GTATCC 1 cut(s) 58
BsuRI GGCC 3 cut(s) 56, 142, 499
BtgI CCRYGG 1 cut(s) 391
BtsCI GGATG 5 cut(s) 31, 262, 357, 438, 547
BtsIMutI CAGTG 1 cut(s) 106
Cac8I GCNNGC 3 cut(s) 305, 447, 501
CciI TCATGA 1 cut(s) 154
Cfr10I RCCGGY 2 cut(s) 445, 499
Cfr13I GGNCC 3 cut(s) 140, 488, 524
CseI GACGC 4 cut(s) 429, 438, 456, 492
Csp6I GTAC 1 cut(s) 556
CviAII CATG 4 cut(s) 155, 304, 321, 392
CviJI RGCY 9 cut(s) 31, 56, 142, 163, 248, 317, 356, 445, 499
CviKI_1 RGCY 9 cut(s) 31, 56, 142, 163, 248, 317, 356, 445, 499
CviQI GTAC 1 cut(s) 556
DdeI CTNAG 3 cut(s) 51, 121, 552
DraIII CACNNNGTG 3 cut(s) 464, 482, 518
Eco130I CCWWGG 1 cut(s) 391
Eco147I AGGCCT 1 cut(s) 56
Eco47I GGWCC 2 cut(s) 488, 524
EcoO109I RGGNCCY 1 cut(s) 140
EcoT14I CCWWGG 1 cut(s) 391
ErhI CCWWGG 1 cut(s) 391
Esp3I CGTCTC 3 cut(s) 456, 474, 510
FaeI CATG 4 cut(s) 158, 307, 324, 395
FaqI GGGAC 1 cut(s) 253
FatI CATG 4 cut(s) 154, 303, 320, 391
FauNDI CATATG 1 cut(s) 199
Fnu4HI GCNGC 1 cut(s) 315
FokI GGATG 5 cut(s) 38, 269, 364, 445, 534
Fsp4HI GCNGC 1 cut(s) 315
FspBI CTAG 2 cut(s) 338, 533
GluI GCNGC 1 cut(s) 315
GsaI CCCAGC 1 cut(s) 140
GsuI CTGGAG 2 cut(s) 82, 378
HaeIII GGCC 3 cut(s) 56, 142, 499
HapII CCGG 2 cut(s) 446, 500
HgaI GACGC 4 cut(s) 429, 438, 456, 492
Hin1I GRCGYC 2 cut(s) 449, 503
Hin1II CATG 4 cut(s) 158, 307, 324, 395
HincII GTYRAC 1 cut(s) 91
HindII GTYRAC 1 cut(s) 91
HinfI GANTC 2 cut(s) 47, 95
HpaII CCGG 2 cut(s) 446, 500
HphI GGTGA 1 cut(s) 177
Hpy166II GTNNAC 3 cut(s) 91, 491, 527
Hpy188I TCNGA 5 cut(s) 46, 52, 211, 235, 351
Hpy188III TCNNGA 1 cut(s) 155
Hpy8I GTNNAC 3 cut(s) 91, 491, 527
HpyAV CCTTC 2 cut(s) 153, 230
HpyCH4III ACNGT 1 cut(s) 70
HpyCH4V TGCA 4 cut(s) 16, 40, 303, 376
HpyF10VI GCNNNNNNNGC 9 cut(s) 37, 126, 353, 455, 464, 473, 482, 509, 518
HpyF3I CTNAG 3 cut(s) 51, 121, 552
Hsp92I GRCGYC 2 cut(s) 449, 503
Hsp92II CATG 4 cut(s) 158, 307, 324, 395
KroI GCCGGC 2 cut(s) 445, 499
KroNI GCCGGC 2 cut(s) 447, 501
LpnPI CCDG 9 cut(s) 112, 122, 173, 178, 342, 459, 471, 507, 513
Lsp1109I GCAGC 1 cut(s) 326
LweI GCATC 1 cut(s) 556
MaeI CTAG 2 cut(s) 338, 533
MaeIII GTNAC 2 cut(s) 380, 541
MboII GAAGA 2 cut(s) 20, 410
MluCI AATT 1 cut(s) 409
MlyI GAGTC 1 cut(s) 89
MnlI CCTC 8 cut(s) 46, 79, 119, 275, 353, 361, 532, 561
MroNI GCCGGC 2 cut(s) 445, 499
MslI CAYNNNNRTG 2 cut(s) 302, 567
MspI CCGG 2 cut(s) 446, 500
MwoI GCNNNNNNNGC 9 cut(s) 37, 126, 353, 455, 464, 473, 482, 509, 518
NaeI GCCGGC 2 cut(s) 447, 501
NcoI CCATGG 1 cut(s) 391
NdeI CATATG 1 cut(s) 199
NgoMIV GCCGGC 2 cut(s) 445, 499
NlaIII CATG 4 cut(s) 158, 307, 324, 395
NlaIV GGNNCC 1 cut(s) 141
NspI RCATGY 1 cut(s) 307
PaeI GCATGC 1 cut(s) 307
PagI TCATGA 1 cut(s) 154
PceI AGGCCT 1 cut(s) 56
PdiI GCCGGC 2 cut(s) 447, 501
PfeI GAWTC 1 cut(s) 47
PkrI GCNGC 1 cut(s) 316
PleI GAGTC 1 cut(s) 89
PpsI GAGTC 1 cut(s) 89
PspFI CCCAGC 1 cut(s) 136
PspN4I GGNNCC 1 cut(s) 141
PspPI GGNCC 3 cut(s) 140, 488, 524
RsaI GTAC 1 cut(s) 557
RsaNI GTAC 1 cut(s) 556
RseI CAYNNNNRTG 2 cut(s) 302, 567
SatI GCNGC 1 cut(s) 315
Sau96I GGNCC 3 cut(s) 140, 488, 524
ScaI AGTACT 1 cut(s) 557
SchI GAGTC 1 cut(s) 89
SetI ASST 7 cut(s) 90, 165, 222, 250, 267, 319, 543
SfaNI GCATC 1 cut(s) 556
SfcI CTRYAG 1 cut(s) 309
SinI GGWCC 2 cut(s) 488, 524
SmiMI CAYNNNNRTG 2 cut(s) 302, 567
SpeI ACTAGT 1 cut(s) 532
SphI GCATGC 1 cut(s) 307
Sse9I AATT 1 cut(s) 409
SseBI AGGCCT 1 cut(s) 56
SspMI CTAG 2 cut(s) 338, 533
StuI AGGCCT 1 cut(s) 56
StyI CCWWGG 1 cut(s) 391
TaaI ACNGT 1 cut(s) 70
TaqI TCGA 1 cut(s) 288
TasI AATT 1 cut(s) 409
TatI WGTACW 1 cut(s) 555
TfiI GAWTC 1 cut(s) 47
TscAI CASTG 1 cut(s) 106
TseI GCWGC 1 cut(s) 314
TspDTI ATGAA 3 cut(s) 216, 309, 420
TspRI CASTG 1 cut(s) 106
VpaK11BI GGWCC 2 cut(s) 488, 524
XapI RAATTY 1 cut(s) 409
XceI RCATGY 1 cut(s) 307
XspI CTAG 2 cut(s) 338, 533
ZrmI AGTACT 1 cut(s) 557
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.