Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0009645

Physical Location & Seq

Genomic Coordinates Reverse (-)

24933937 .. 24934655

Gene Structure 719 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018056

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGTCAAGTTCTGGGGACCAGTTGAATACTATAGCAAGTGAGAATGGGATTGATGGGTCCAGTGCTCTTCTGCCAGTTGAATTAGCTACACTGGGGCCTTCTCTATTCCAGGACCTTCTCTTTAACATTATTGATCTTTCACCAAACTGGGCATATGAACACTCTGAAACAGAGGTTCTTGTTGTCGGAGGGTTCTTGAAGAGTCGAGAACTAGAAAGTTTTAAGTGGTCATACGGGTCATCCTCACCAGAATCTGGCATTACGTTCTTGGATTTCTCGGATTCTCAGTGGGATGAGGATAATTCTTTTATATTGGAAAAGTATCCAGCTGTGGAGATTGATTGGTCCGCTATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000982 GO:0001077 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010150 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0031349 GO:0032501 GO:0032502 GO:0032774 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070417 GO:0071704 GO:0080090 GO:0080134 GO:0090304 GO:0090693 GO:0097159 GO:0097659 GO:0098542 GO:0099402 GO:0140110 GO:1900367 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:2000068 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 CG-1 IQ TIG

Protein Analysis

119

Amino Acids

13.0

Weight (kDa)

4.05

Isoelectric Point (pI)

52.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009645)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20830
rosa_chinensis	RchiOBHm_Chr2g0113341
rosa_laevigata	RLG00000018056 RLG00000018057
rosa_multiflora	Rmu_co8050506.1_g000001 Rmu_sc0007415.1_g000002
rosa_roxburghii	Rroxscaffold_2G00129420 Rroxscaffold_2G00129470 Rroxscaffold_7G00197620
rosa_rugosa	Rorug02G0186400
rosa_samantha	Rh2AG219200 Rh2AG240900 Rh2BG255000 Rh2CG245200 Rh2DG225400 Rh2DG248900 Rh6BG157200 Rh6DG142400 Rh7AG282700 Rh7CG302000 Rh7DG286600
rosa_wichuraiana	Rw0G002600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	254
AciI	CCGC	1 cut(s)	348
AfiI	CCNNNNNNNGG	1 cut(s)	254
AgsI	TTSAA	3 cut(s)	25, 80, 199
AjnI	CCWGG	1 cut(s)	108
AluBI	AGCT	2 cut(s)	86, 329
AluI	AGCT	2 cut(s)	86, 329
Alw21I	GWGCWC	1 cut(s)	67
AlwNI	CAGNNNCTG	1 cut(s)	254
AoxI	GGCC	1 cut(s)	95
AspS9I	GGNCC	5 cut(s)	16, 57, 95, 112, 345
AsuHPI	GGTGA	2 cut(s)	132, 237
AvaII	GGWCC	4 cut(s)	16, 57, 112, 345
Bbv12I	GWGCWC	1 cut(s)	67
BccI	CCATC	1 cut(s)	47
BciT130I	CCWGG	1 cut(s)	110
BciVI	GTATCC	1 cut(s)	333
BfaI	CTAG	1 cut(s)	212
BfmI	CTRYAG	1 cut(s)	30
BfuI	GTATCC	1 cut(s)	333
Bme1390I	CCNGG	1 cut(s)	110
Bme18I	GGWCC	4 cut(s)	16, 57, 112, 345
BmgT120I	GGNCC	5 cut(s)	16, 57, 95, 112, 345
BmiI	GGNNCC	3 cut(s)	17, 58, 96
BmrFI	CCNGG	1 cut(s)	110
BmrI	ACTGGG	2 cut(s)	101, 157
BmuI	ACTGGG	2 cut(s)	101, 157
Bsc4I	CCNNNNNNNGG	1 cut(s)	254
Bse1I	ACTGG	5 cut(s)	19, 60, 74, 96, 152
BseBI	CCWGG	1 cut(s)	110
BseGI	GGATG	2 cut(s)	239, 298
BseLI	CCNNNNNNNGG	1 cut(s)	254
BseMII	CTCAG	1 cut(s)	299
BseNI	ACTGG	5 cut(s)	19, 60, 74, 96, 152
BshFI	GGCC	1 cut(s)	97
BsiHKAI	GWGCWC	1 cut(s)	67
BslFI	GGGAC	1 cut(s)	29
BslI	CCNNNNNNNGG	1 cut(s)	254
BsmFI	GGGAC	1 cut(s)	29
BsnI	GGCC	1 cut(s)	97
Bsp1286I	GDGCHC	1 cut(s)	67
Bsp143I	GATC	1 cut(s)	133
BspACI	CCGC	1 cut(s)	348
BspANI	GGCC	1 cut(s)	97
BspCNI	CTCAG	1 cut(s)	298
BspLI	GGNNCC	3 cut(s)	17, 58, 96
BspQI	GCTCTTC	1 cut(s)	72
BsrI	ACTGG	5 cut(s)	19, 60, 74, 96, 152
BssMI	GATC	1 cut(s)	133
Bst2UI	CCWGG	1 cut(s)	110
Bst6I	CTCTTC	2 cut(s)	72, 194
BstDEI	CTNAG	1 cut(s)	285
BstF5I	GGATG	2 cut(s)	239, 298
BstKTI	GATC	1 cut(s)	136
BstMBI	GATC	1 cut(s)	133
BstNI	CCWGG	1 cut(s)	110
BstSCI	CCNGG	1 cut(s)	108
BstSFI	CTRYAG	1 cut(s)	30
BsuI	GTATCC	1 cut(s)	333
BsuRI	GGCC	1 cut(s)	97
BtsCI	GGATG	2 cut(s)	239, 298
BtsIMutI	CAGTG	3 cut(s)	67, 89, 293
CaiI	CAGNNNCTG	1 cut(s)	254
Cfr13I	GGNCC	5 cut(s)	16, 57, 95, 112, 345
CviJI	RGCY	3 cut(s)	86, 97, 329
CviKI_1	RGCY	3 cut(s)	86, 97, 329
DdeI	CTNAG	1 cut(s)	285
DpnI	GATC	1 cut(s)	135
DpnII	GATC	1 cut(s)	133
Eam1104I	CTCTTC	2 cut(s)	72, 194
EarI	CTCTTC	2 cut(s)	72, 194
Eco47I	GGWCC	4 cut(s)	16, 57, 112, 345
EcoO109I	RGGNCCY	2 cut(s)	95, 112
EcoRII	CCWGG	1 cut(s)	108
FaiI	YATR	5 cut(s)	32, 154, 156, 232, 311
FaqI	GGGAC	1 cut(s)	29
FauNDI	CATATG	1 cut(s)	154
FokI	GGATG	2 cut(s)	226, 305
FspBI	CTAG	1 cut(s)	212
HaeIII	GGCC	1 cut(s)	97
HinfI	GANTC	3 cut(s)	202, 251, 281
HphI	GGTGA	2 cut(s)	132, 237
Hpy188I	TCNGA	3 cut(s)	166, 188, 280
Hpy188III	TCNNGA	2 cut(s)	196, 206
HpyAV	CCTTC	2 cut(s)	108, 125
HpyCH4IV	ACGT	1 cut(s)	263
HpyF3I	CTNAG	1 cut(s)	285
HpySE526I	ACGT	1 cut(s)	263
Kzo9I	GATC	1 cut(s)	133
LguI	GCTCTTC	1 cut(s)	72
MaeI	CTAG	1 cut(s)	212
MaeII	ACGT	1 cut(s)	263
MalI	GATC	1 cut(s)	135
MboI	GATC	1 cut(s)	133
MboII	GAAGA	2 cut(s)	59, 211
MhlI	GDGCHC	1 cut(s)	67
MluCI	AATT	2 cut(s)	80, 301
MlyI	GAGTC	1 cut(s)	211
MmeI	TCCRAC	1 cut(s)	166
MnlI	CCTC	4 cut(s)	166, 182, 253, 289
MseI	TTAA	3 cut(s)	123, 222, 355
MspA1I	CMGCKG	1 cut(s)	329
MspR9I	CCNGG	1 cut(s)	110
MvaI	CCWGG	1 cut(s)	110
NdeI	CATATG	1 cut(s)	154
NdeII	GATC	1 cut(s)	133
NlaIV	GGNNCC	3 cut(s)	17, 58, 96
PciSI	GCTCTTC	1 cut(s)	72
PfeI	GAWTC	2 cut(s)	251, 281
PflMI	CCANNNNNTGG	1 cut(s)	254
PfoI	TCCNGGA	1 cut(s)	108
PleI	GAGTC	1 cut(s)	210
PpsI	GAGTC	1 cut(s)	210
PpuMI	RGGWCCY	1 cut(s)	112
Psp5II	RGGWCCY	1 cut(s)	112
Psp6I	CCWGG	1 cut(s)	108
PspGI	CCWGG	1 cut(s)	108
PspN4I	GGNNCC	3 cut(s)	17, 58, 96
PspPI	GGNCC	5 cut(s)	16, 57, 95, 112, 345
PspPPI	RGGWCCY	1 cut(s)	112
PstNI	CAGNNNCTG	1 cut(s)	254
PvuII	CAGCTG	1 cut(s)	329
SapI	GCTCTTC	1 cut(s)	72
SaqAI	TTAA	3 cut(s)	123, 222, 355
Sau3AI	GATC	1 cut(s)	133
Sau96I	GGNCC	5 cut(s)	16, 57, 95, 112, 345
SchI	GAGTC	1 cut(s)	211
ScrFI	CCNGG	1 cut(s)	110
SduI	GDGCHC	1 cut(s)	67
SetI	ASST	5 cut(s)	88, 117, 177, 266, 331
SfcI	CTRYAG	1 cut(s)	30
SinI	GGWCC	4 cut(s)	16, 57, 112, 345
Sse9I	AATT	2 cut(s)	80, 301
SsiI	CCGC	1 cut(s)	348
SspMI	CTAG	1 cut(s)	212
StyD4I	CCNGG	1 cut(s)	108
TaiI	ACGT	1 cut(s)	266
TaqI	TCGA	1 cut(s)	205
TasI	AATT	2 cut(s)	80, 301
TfiI	GAWTC	2 cut(s)	251, 281
Tru1I	TTAA	3 cut(s)	123, 222, 355
Tru9I	TTAA	3 cut(s)	123, 222, 355
TscAI	CASTG	3 cut(s)	67, 96, 293
TspDTI	ATGAA	1 cut(s)	171
TspRI	CASTG	3 cut(s)	67, 96, 293
Van91I	CCANNNNNTGG	1 cut(s)	254
VpaK11BI	GGWCC	4 cut(s)	16, 57, 112, 345
XspI	CTAG	1 cut(s)	212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.