Rh2DG225400

conserved protein UCP030365

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0009645
Physical Location & Seq
Forward (+)
22046147 .. 22047557
1411 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG225400.1

Sequence Viewer

Length: 327 bp
ATGCCCAAATCAGATTCCAAGGTTTTGGGGGAGAAGGGGGTTGGTGTTGAATTGGGAGGTGACGATGAACTTGGGCTTAGAAAATGGATTAAGATGCGGGATCTTGAATCAGTGTGCCGCGCTGAAGATTGTACCATGGCTGTTGATGGGAAGGCCGACTCCGACATGTGCTCGTCCTCCCAAACCACCAAAGAGCAAGAGGAAGGCTGGAAGAGGGCTGAGAGCCGAGATCTGAAAAGAAAAAAAAAAGTATTTTGGGCTCGAAAGCCTGGAAACTCGGCCCGAAATGAAACGGGCCGGTCCCGGGCCCAGCAAATGATAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

108

Amino Acids

12.12

Weight (kDa)

9.07

Isoelectric Point (pI)

49.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 120
AciI CCGC 2 cut(s) 97, 118
AclWI GGATC 1 cut(s) 108
AcuI CTGAAG 1 cut(s) 144
AfaI GTAC 1 cut(s) 133
AfiI CCNNNNNNNGG 1 cut(s) 304
AflIII ACRYGT 1 cut(s) 165
AgsI TTSAA 2 cut(s) 50, 107
AjnI CCWGG 1 cut(s) 268
Alw21I GWGCWC 1 cut(s) 173
AlwI GGATC 1 cut(s) 108
Ama87I CYCGRG 1 cut(s) 303
AoxI GGCC 4 cut(s) 153, 279, 295, 306
ApaI GGGCCC 1 cut(s) 310
AspLEI GCGC 1 cut(s) 122
AspS9I GGNCC 5 cut(s) 280, 295, 300, 306, 307
AsuC2I CCSGG 2 cut(s) 304, 305
AsuHPI GGTGA 1 cut(s) 71
AvaI CYCGRG 1 cut(s) 303
AvaII GGWCC 1 cut(s) 300
BaeGI GKGCMC 1 cut(s) 310
BanII GRGCYC 2 cut(s) 262, 310
Bbv12I GWGCWC 1 cut(s) 173
BccI CCATC 1 cut(s) 140
BciT130I CCWGG 1 cut(s) 270
BcnI CCSGG 2 cut(s) 304, 305
BglII AGATCT 1 cut(s) 229
BisI GCNGC 1 cut(s) 118
BlsI GCNGC 1 cut(s) 119
Bme1390I CCNGG 3 cut(s) 270, 304, 305
Bme18I GGWCC 1 cut(s) 300
BmeT110I CYCGRG 1 cut(s) 303
BmgT120I GGNCC 5 cut(s) 280, 295, 300, 306, 307
BmiI GGNNCC 2 cut(s) 302, 308
BmrFI CCNGG 3 cut(s) 270, 304, 305
BmsI GCATC 1 cut(s) 84
BpuMI CCSGG 2 cut(s) 304, 305
BsaJI CCNNGG 3 cut(s) 18, 135, 303
Bsc4I CCNNNNNNNGG 1 cut(s) 304
Bse118I RCCGGY 1 cut(s) 297
BseBI CCWGG 1 cut(s) 270
BseDI CCNNGG 3 cut(s) 18, 135, 303
BseLI CCNNNNNNNGG 1 cut(s) 304
BseMII CTCAG 1 cut(s) 210
BseSI GKGCMC 1 cut(s) 310
BseYI CCCAGC 1 cut(s) 309
Bsh1236I CGCG 1 cut(s) 120
BshFI GGCC 4 cut(s) 155, 281, 297, 308
BsiHKAI GWGCWC 1 cut(s) 173
BsiHKCI CYCGRG 1 cut(s) 303
BsiSI CCGG 2 cut(s) 298, 304
BslFI GGGAC 1 cut(s) 286
BslI CCNNNNNNNGG 1 cut(s) 304
BsmFI GGGAC 1 cut(s) 286
BsnI GGCC 4 cut(s) 155, 281, 297, 308
BsoBI CYCGRG 1 cut(s) 303
Bsp120I GGGCCC 1 cut(s) 306
Bsp1286I GDGCHC 3 cut(s) 173, 262, 310
Bsp143I GATC 2 cut(s) 100, 229
Bsp19I CCATGG 1 cut(s) 135
BspACI CCGC 2 cut(s) 97, 118
BspANI GGCC 4 cut(s) 155, 281, 297, 308
BspCNI CTCAG 1 cut(s) 211
BspFNI CGCG 1 cut(s) 120
BspLI GGNNCC 2 cut(s) 302, 308
BspPI GGATC 1 cut(s) 108
BsrFI RCCGGY 1 cut(s) 297
BssAI RCCGGY 1 cut(s) 297
BssECI CCNNGG 3 cut(s) 18, 135, 303
BssMI GATC 2 cut(s) 100, 229
BssT1I CCWWGG 2 cut(s) 18, 135
Bst2UI CCWGG 1 cut(s) 270
Bst6I CTCTTC 1 cut(s) 206
BstDEI CTNAG 2 cut(s) 77, 219
BstDSI CCRYGG 1 cut(s) 135
BstFNI CGCG 1 cut(s) 120
BstHHI GCGC 1 cut(s) 122
BstKTI GATC 2 cut(s) 103, 232
BstMBI GATC 2 cut(s) 100, 229
BstNI CCWGG 1 cut(s) 270
BstNSI RCATGY 1 cut(s) 169
BstSCI CCNGG 3 cut(s) 268, 302, 303
BstSLI GKGCMC 1 cut(s) 310
BstUI CGCG 1 cut(s) 120
BstX2I RGATCY 2 cut(s) 100, 229
BstXI CCANNNNNNTGG 1 cut(s) 25
BstYI RGATCY 2 cut(s) 100, 229
BsuRI GGCC 4 cut(s) 155, 281, 297, 308
BtgI CCRYGG 1 cut(s) 135
BtsIMutI CAGTG 1 cut(s) 117
CfoI GCGC 1 cut(s) 122
Cfr10I RCCGGY 1 cut(s) 297
Cfr13I GGNCC 5 cut(s) 280, 295, 300, 306, 307
Cfr9I CCCGGG 1 cut(s) 303
Csp6I GTAC 1 cut(s) 132
CviAII CATG 2 cut(s) 136, 166
CviQI GTAC 1 cut(s) 132
DdeI CTNAG 2 cut(s) 77, 219
DpnI GATC 2 cut(s) 102, 231
DpnII GATC 2 cut(s) 100, 229
Eam1104I CTCTTC 1 cut(s) 206
EarI CTCTTC 1 cut(s) 206
Eco130I CCWWGG 2 cut(s) 18, 135
Eco24I GRGCYC 2 cut(s) 262, 310
Eco47I GGWCC 1 cut(s) 300
Eco57I CTGAAG 1 cut(s) 144
Eco88I CYCGRG 1 cut(s) 303
EcoRII CCWGG 1 cut(s) 268
EcoT14I CCWWGG 2 cut(s) 18, 135
EcoT38I GRGCYC 2 cut(s) 262, 310
ErhI CCWWGG 2 cut(s) 18, 135
FaeI CATG 2 cut(s) 139, 169
FaiI YATR 2 cut(s) 137, 167
FaqI GGGAC 1 cut(s) 286
FatI CATG 2 cut(s) 135, 165
FauI CCCGC 1 cut(s) 90
Fnu4HI GCNGC 1 cut(s) 118
FriOI GRGCYC 2 cut(s) 262, 310
Fsp4HI GCNGC 1 cut(s) 118
GlaI GCGC 1 cut(s) 121
GluI GCNGC 1 cut(s) 118
GsaI CCCAGC 1 cut(s) 313
HaeIII GGCC 4 cut(s) 155, 281, 297, 308
HapII CCGG 2 cut(s) 298, 304
HhaI GCGC 1 cut(s) 122
Hin1II CATG 2 cut(s) 139, 169
Hin6I GCGC 1 cut(s) 120
HinP1I GCGC 1 cut(s) 120
HinfI GANTC 3 cut(s) 14, 107, 158
HpaII CCGG 2 cut(s) 298, 304
HphI GGTGA 1 cut(s) 71
Hpy188I TCNGA 3 cut(s) 13, 163, 234
Hpy188III TCNNGA 1 cut(s) 104
HpyAV CCTTC 3 cut(s) 28, 145, 197
HpyF3I CTNAG 2 cut(s) 77, 219
Hsp92II CATG 2 cut(s) 139, 169
HspAI GCGC 1 cut(s) 120
Kzo9I GATC 2 cut(s) 100, 229
LpnPI CCDG 6 cut(s) 193, 255, 282, 311, 317, 323
LweI GCATC 1 cut(s) 84
MaeIII GTNAC 1 cut(s) 59
MalI GATC 2 cut(s) 102, 231
MboI GATC 2 cut(s) 100, 229
MboII GAAGA 2 cut(s) 137, 223
MflI RGATCY 2 cut(s) 100, 229
MhlI GDGCHC 3 cut(s) 173, 262, 310
MluCI AATT 1 cut(s) 50
MlyI GAGTC 1 cut(s) 152
MmeI TCCRAC 1 cut(s) 186
MnlI CCTC 4 cut(s) 50, 187, 193, 207
MseI TTAA 1 cut(s) 90
MspI CCGG 2 cut(s) 298, 304
MspR9I CCNGG 3 cut(s) 270, 304, 305
MvaI CCWGG 1 cut(s) 270
MvnI CGCG 1 cut(s) 120
NciI CCSGG 2 cut(s) 304, 305
NcoI CCATGG 1 cut(s) 135
NdeII GATC 2 cut(s) 100, 229
NlaIII CATG 2 cut(s) 139, 169
NlaIV GGNNCC 2 cut(s) 302, 308
NmeAIII GCCGAG 2 cut(s) 251, 257
NmuCI GTSAC 1 cut(s) 59
NspI RCATGY 1 cut(s) 169
PciI ACATGT 1 cut(s) 165
PfeI GAWTC 2 cut(s) 14, 107
PkrI GCNGC 1 cut(s) 119
PleI GAGTC 1 cut(s) 152
PpsI GAGTC 1 cut(s) 152
PscI ACATGT 1 cut(s) 165
Psp6I CCWGG 1 cut(s) 268
PspFI CCCAGC 1 cut(s) 309
PspGI CCWGG 1 cut(s) 268
PspN4I GGNNCC 2 cut(s) 302, 308
PspOMI GGGCCC 1 cut(s) 306
PspPI GGNCC 5 cut(s) 280, 295, 300, 306, 307
PsuI RGATCY 2 cut(s) 100, 229
RsaI GTAC 1 cut(s) 133
RsaNI GTAC 1 cut(s) 132
SaqAI TTAA 1 cut(s) 90
SatI GCNGC 1 cut(s) 118
Sau3AI GATC 2 cut(s) 100, 229
Sau96I GGNCC 5 cut(s) 280, 295, 300, 306, 307
SchI GAGTC 1 cut(s) 152
ScrFI CCNGG 3 cut(s) 270, 304, 305
SduI GDGCHC 3 cut(s) 173, 262, 310
SetI ASST 2 cut(s) 24, 61
SfaNI GCATC 1 cut(s) 84
SinI GGWCC 1 cut(s) 300
SmaI CCCGGG 1 cut(s) 305
Sse9I AATT 1 cut(s) 50
SsiI CCGC 2 cut(s) 97, 118
StyD4I CCNGG 3 cut(s) 268, 302, 303
StyI CCWWGG 2 cut(s) 18, 135
TaqI TCGA 1 cut(s) 262
TasI AATT 1 cut(s) 50
TauI GCSGC 1 cut(s) 120
TfiI GAWTC 2 cut(s) 14, 107
Tru1I TTAA 1 cut(s) 90
Tru9I TTAA 1 cut(s) 90
TscAI CASTG 1 cut(s) 117
TseFI GTSAC 1 cut(s) 59
Tsp45I GTSAC 1 cut(s) 59
TspDTI ATGAA 2 cut(s) 81, 303
TspMI CCCGGG 1 cut(s) 303
TspRI CASTG 1 cut(s) 117
VpaK11BI GGWCC 1 cut(s) 300
XceI RCATGY 1 cut(s) 169
XmaI CCCGGG 1 cut(s) 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.