Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00081

Orthogroup ID

OG0009645

Physical Location & Seq

Genomic Coordinates Reverse (-)

27731 .. 28573

Gene Structure 843 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G002600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 180 bp

ATGGTTCAGTATCCTGAAGCAAGAGATCAATACCATCGACTGTTAAATGTTGTCACTGAGATTCAGGAAACAAAGGTGCTGAATAGTTCAGAGGGGACATCAGCTTATATGGATGATGACCTCATAGACATTGAAGCGTTGTTCGATGATGACATTTTCATGCCTACAGCAGCTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000982 GO:0001077 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010150 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0031349 GO:0032501 GO:0032502 GO:0032774 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070417 GO:0071704 GO:0080090 GO:0080134 GO:0090304 GO:0090693 GO:0097159 GO:0097659 GO:0098542 GO:0099402 GO:0140110 GO:1900367 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:2000068 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 CG-1 IQ TIG

Protein Analysis

59

Amino Acids

6.73

Weight (kDa)

4.05

Isoelectric Point (pI)

50.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009645)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20830
rosa_chinensis	RchiOBHm_Chr2g0113341
rosa_laevigata	RLG00000018056 RLG00000018057
rosa_multiflora	Rmu_co8050506.1_g000001 Rmu_sc0007415.1_g000002
rosa_roxburghii	Rroxscaffold_2G00129420 Rroxscaffold_2G00129470 Rroxscaffold_7G00197620
rosa_rugosa	Rorug02G0186400
rosa_samantha	Rh2AG219200 Rh2AG240900 Rh2BG255000 Rh2CG245200 Rh2DG225400 Rh2DG248900 Rh6BG157200 Rh6DG142400 Rh7AG282700 Rh7CG302000 Rh7DG286600
rosa_wichuraiana	Rw0G002600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	36
AgsI	TTSAA	1 cut(s)	134
AluBI	AGCT	2 cut(s)	104, 173
AluI	AGCT	2 cut(s)	104, 173
ApeKI	GCWGC	1 cut(s)	170
BccI	CCATC	1 cut(s)	42
BciVI	GTATCC	1 cut(s)	21
BfmI	CTRYAG	1 cut(s)	165
BfuI	GTATCC	1 cut(s)	21
BisI	GCNGC	1 cut(s)	171
BlsI	GCNGC	1 cut(s)	172
BseGI	GGATG	1 cut(s)	118
BseMII	CTCAG	1 cut(s)	48
BslFI	GGGAC	1 cut(s)	109
BsmFI	GGGAC	1 cut(s)	109
Bsp143I	GATC	1 cut(s)	25
BspCNI	CTCAG	1 cut(s)	49
BssMI	GATC	1 cut(s)	25
Bst4CI	ACNGT	1 cut(s)	42
BstDEI	CTNAG	1 cut(s)	57
BstF5I	GGATG	1 cut(s)	118
BstKTI	GATC	1 cut(s)	28
BstMBI	GATC	1 cut(s)	25
BstSFI	CTRYAG	1 cut(s)	165
BsuI	GTATCC	1 cut(s)	21
BtsCI	GGATG	1 cut(s)	118
BtsIMutI	CAGTG	1 cut(s)	54
CviAII	CATG	1 cut(s)	160
CviJI	RGCY	2 cut(s)	104, 173
CviKI_1	RGCY	2 cut(s)	104, 173
DdeI	CTNAG	1 cut(s)	57
DpnI	GATC	1 cut(s)	27
DpnII	GATC	1 cut(s)	25
Eco57I	CTGAAG	1 cut(s)	36
FaeI	CATG	1 cut(s)	163
FaiI	YATR	5 cut(s)	108, 110, 125, 161, 178
FaqI	GGGAC	1 cut(s)	109
FatI	CATG	1 cut(s)	159
Fnu4HI	GCNGC	1 cut(s)	171
FokI	GGATG	1 cut(s)	125
Fsp4HI	GCNGC	1 cut(s)	171
FspEI	CC	9 cut(s)	27, 47, 50, 59, 77, 78, 79, 95, 134
GluI	GCNGC	1 cut(s)	171
Hin1II	CATG	1 cut(s)	163
HinfI	GANTC	1 cut(s)	61
Hpy188I	TCNGA	1 cut(s)	91
Hpy188III	TCNNGA	2 cut(s)	14, 65
HpyCH4III	ACNGT	1 cut(s)	42
HpyF3I	CTNAG	1 cut(s)	57
Hsp92II	CATG	1 cut(s)	163
Kzo9I	GATC	1 cut(s)	25
LpnPI	CCDG	2 cut(s)	27, 50
MaeIII	GTNAC	1 cut(s)	52
MalI	GATC	1 cut(s)	27
MboI	GATC	1 cut(s)	25
MnlI	CCTC	2 cut(s)	85, 131
MseI	TTAA	1 cut(s)	44
MslI	CAYNNNNRTG	1 cut(s)	158
NdeII	GATC	1 cut(s)	25
NlaIII	CATG	1 cut(s)	163
NmuCI	GTSAC	1 cut(s)	52
PfeI	GAWTC	1 cut(s)	61
PkrI	GCNGC	1 cut(s)	172
RseI	CAYNNNNRTG	1 cut(s)	158
SaqAI	TTAA	1 cut(s)	44
SatI	GCNGC	1 cut(s)	171
Sau3AI	GATC	1 cut(s)	25
SetI	ASST	4 cut(s)	78, 106, 123, 175
SfcI	CTRYAG	1 cut(s)	165
SgeI	CNNG	4 cut(s)	26, 33, 77, 172
SmiMI	CAYNNNNRTG	1 cut(s)	158
TaaI	ACNGT	1 cut(s)	42
TaqI	TCGA	2 cut(s)	37, 144
TfiI	GAWTC	1 cut(s)	61
Tru1I	TTAA	1 cut(s)	44
Tru9I	TTAA	1 cut(s)	44
TscAI	CASTG	1 cut(s)	61
TseFI	GTSAC	1 cut(s)	52
TseI	GCWGC	1 cut(s)	170
Tsp45I	GTSAC	1 cut(s)	52
TspDTI	ATGAA	2 cut(s)	148, 165
TspRI	CASTG	1 cut(s)	61

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.