Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0009645

Physical Location & Seq

Genomic Coordinates Forward (+)

65309182 .. 65309744

Gene Structure 563 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00129420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 213 bp

ATGAGTGAAGAACTGGAAGATGTGGATGAGCCACAAATGCAGTCCCGTTCTGGGGCCTACTGGGATACTGTTGAAAGTGAGAATGAGGTTGATGAGTCCAGTGTTCCCCTGCAAGTACGCTTGGATAGCTATATGCTGGGGACTTCTCTTTCTCATGACCAGCTCTTTAGCATTGTTGATTTCCACCAAACTGGGCGTATGAAAACTCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000982 GO:0001077 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010150 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0031349 GO:0032501 GO:0032502 GO:0032774 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070417 GO:0071704 GO:0080090 GO:0080134 GO:0090304 GO:0090693 GO:0097159 GO:0097659 GO:0098542 GO:0099402 GO:0140110 GO:1900367 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:2000068 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank Ank_2 CG-1 IQ TIG

Protein Analysis

70

Amino Acids

8.03

Weight (kDa)

4.1

Isoelectric Point (pI)

56.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009645)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20830
rosa_chinensis	RchiOBHm_Chr2g0113341
rosa_laevigata	RLG00000018056 RLG00000018057
rosa_multiflora	Rmu_co8050506.1_g000001 Rmu_sc0007415.1_g000002
rosa_roxburghii	Rroxscaffold_2G00129420 Rroxscaffold_2G00129470 Rroxscaffold_7G00197620
rosa_rugosa	Rorug02G0186400
rosa_samantha	Rh2AG219200 Rh2AG240900 Rh2BG255000 Rh2CG245200 Rh2DG225400 Rh2DG248900 Rh6BG157200 Rh6DG142400 Rh7AG282700 Rh7CG302000 Rh7DG286600
rosa_wichuraiana	Rw0G002600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	117
AfiI	CCNNNNNNNGG	2 cut(s)	51, 52
AgsI	TTSAA	1 cut(s)	74
AluBI	AGCT	2 cut(s)	129, 163
AluI	AGCT	2 cut(s)	129, 163
AoxI	GGCC	1 cut(s)	54
AspS9I	GGNCC	1 cut(s)	54
BciVI	GTATCC	1 cut(s)	58
BfuI	GTATCC	1 cut(s)	58
BmgT120I	GGNCC	1 cut(s)	54
BmiI	GGNNCC	1 cut(s)	55
BmrI	ACTGGG	2 cut(s)	70, 201
BmuI	ACTGGG	2 cut(s)	70, 201
Bsc4I	CCNNNNNNNGG	2 cut(s)	51, 52
Bse1I	ACTGG	4 cut(s)	18, 65, 99, 196
BseGI	GGATG	1 cut(s)	31
BseLI	CCNNNNNNNGG	2 cut(s)	51, 52
BseNI	ACTGG	4 cut(s)	18, 65, 99, 196
BseYI	CCCAGC	1 cut(s)	136
BshFI	GGCC	1 cut(s)	56
BslFI	GGGAC	2 cut(s)	28, 154
BslI	CCNNNNNNNGG	2 cut(s)	51, 52
BsmFI	GGGAC	2 cut(s)	28, 154
BsnI	GGCC	1 cut(s)	56
BspANI	GGCC	1 cut(s)	56
BspHI	TCATGA	1 cut(s)	154
BspLI	GGNNCC	1 cut(s)	55
BsrI	ACTGG	4 cut(s)	18, 65, 99, 196
Bst4CI	ACNGT	1 cut(s)	70
BstF5I	GGATG	1 cut(s)	31
BstMWI	GCNNNNNNNGC	2 cut(s)	37, 126
BstXI	CCANNNNNNTGG	1 cut(s)	191
BsuI	GTATCC	1 cut(s)	58
BsuRI	GGCC	1 cut(s)	56
BtsCI	GGATG	1 cut(s)	31
BtsIMutI	CAGTG	1 cut(s)	106
CciI	TCATGA	1 cut(s)	154
Cfr13I	GGNCC	1 cut(s)	54
Csp6I	GTAC	1 cut(s)	116
CviAII	CATG	1 cut(s)	155
CviJI	RGCY	4 cut(s)	31, 56, 129, 163
CviKI_1	RGCY	4 cut(s)	31, 56, 129, 163
CviQI	GTAC	1 cut(s)	116
EcoO109I	RGGNCCY	1 cut(s)	54
FaeI	CATG	1 cut(s)	158
FaiI	YATR	4 cut(s)	132, 134, 156, 200
FaqI	GGGAC	2 cut(s)	28, 154
FatI	CATG	1 cut(s)	154
FokI	GGATG	1 cut(s)	38
GsaI	CCCAGC	1 cut(s)	140
HaeIII	GGCC	1 cut(s)	56
Hin1II	CATG	1 cut(s)	158
HinfI	GANTC	1 cut(s)	95
Hpy188III	TCNNGA	1 cut(s)	155
HpyCH4III	ACNGT	1 cut(s)	70
HpyCH4V	TGCA	2 cut(s)	40, 112
HpyF10VI	GCNNNNNNNGC	2 cut(s)	37, 126
Hsp92II	CATG	1 cut(s)	158
LpnPI	CCDG	7 cut(s)	36, 46, 112, 122, 122, 173, 177
MboII	GAAGA	2 cut(s)	20, 29
MlyI	GAGTC	1 cut(s)	104
MnlI	CCTC	1 cut(s)	79
MwoI	GCNNNNNNNGC	2 cut(s)	37, 126
NlaIII	CATG	1 cut(s)	158
NlaIV	GGNNCC	1 cut(s)	55
PagI	TCATGA	1 cut(s)	154
PleI	GAGTC	1 cut(s)	103
PpsI	GAGTC	1 cut(s)	103
PspFI	CCCAGC	1 cut(s)	136
PspN4I	GGNNCC	1 cut(s)	55
PspPI	GGNCC	1 cut(s)	54
RsaI	GTAC	1 cut(s)	117
RsaNI	GTAC	1 cut(s)	116
Sau96I	GGNCC	1 cut(s)	54
SchI	GAGTC	1 cut(s)	104
SetI	ASST	3 cut(s)	90, 131, 165
TaaI	ACNGT	1 cut(s)	70
TscAI	CASTG	1 cut(s)	106
TspRI	CASTG	1 cut(s)	106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.