Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0009645

Physical Location & Seq

Genomic Coordinates Reverse (-)

31886947 .. 31901529

Gene Structure 14583 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG286600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGTCAATCGGGTCGATTCCGAAAATGGGTCGGTGCCCAGATCAGATTCCCAGGTGGGTTTTGGGGGAGAAGCGGGTTGGTGTTGAATTGGGAGGTGAAGATGAACTTGGCTTAGAAAACGGATTAAGATGCGAGATCTTGAATCAGTGTGCCGTGCTTAAGGTGTACTACACAACAACTCAGCTTGGACCAAAAGTTGATACTGAAAGATCTTATCATGAACATGCGCTTGCCATTCTAGAGAAGCTACATTCTGAGATGATTCTGGAGAAGCTACCACAAGAATTTTCATTAGAATCAGAGAAGGTGCATCCAAATGCTAGTTCAAAGAGATCCGATGATCATGAACAACTTCTCGAGATGGCAGTTTTTTCATTGCAAGAGCTATACACCCATTTGATGCTCAAGCAGATGGAGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

SH3_9

Protein Analysis

140

Amino Acids

15.95

Weight (kDa)

5.23

Isoelectric Point (pI)

47.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009645)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20830
rosa_chinensis	RchiOBHm_Chr2g0113341
rosa_laevigata	RLG00000018056 RLG00000018057
rosa_multiflora	Rmu_co8050506.1_g000001 Rmu_sc0007415.1_g000002
rosa_roxburghii	Rroxscaffold_2G00129420 Rroxscaffold_2G00129470 Rroxscaffold_7G00197620
rosa_rugosa	Rorug02G0186400
rosa_samantha	Rh2AG219200 Rh2AG240900 Rh2BG255000 Rh2CG245200 Rh2DG225400 Rh2DG248900 Rh6BG157200 Rh6DG142400 Rh7AG282700 Rh7CG302000 Rh7DG286600
rosa_wichuraiana	Rw0G002600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	33
AciI	CCGC	1 cut(s)	73
AclWI	GGATC	1 cut(s)	327
AcsI	RAATTY	1 cut(s)	284
AfaI	GTAC	1 cut(s)	167
AfiI	CCNNNNNNNGG	1 cut(s)	26
AflII	CTTAAG	1 cut(s)	158
AgsI	TTSAA	3 cut(s)	86, 142, 327
AjnI	CCWGG	1 cut(s)	50
AjuI	GAANNNNNNNTTGG	4 cut(s)	90, 122, 307, 339
AluBI	AGCT	4 cut(s)	184, 247, 274, 385
AluI	AGCT	4 cut(s)	184, 247, 274, 385
AlwI	GGATC	1 cut(s)	327
Ama87I	CYCGRG	1 cut(s)	356
ApoI	RAATTY	1 cut(s)	284
Asp700I	GAANNNNTTC	1 cut(s)	351
AspLEI	GCGC	1 cut(s)	229
AspS9I	GGNCC	1 cut(s)	188
AsuHPI	GGTGA	1 cut(s)	107
AvaI	CYCGRG	1 cut(s)	356
AvaII	GGWCC	1 cut(s)	188
BaeGI	GKGCMC	1 cut(s)	38
BanI	GGYRCC	1 cut(s)	33
BccI	CCATC	2 cut(s)	355, 406
BceAI	ACGGC	1 cut(s)	137
BciT130I	CCWGG	1 cut(s)	52
BclI	TGATCA	1 cut(s)	340
BfaI	CTAG	2 cut(s)	239, 321
BfrI	CTTAAG	1 cut(s)	158
BglII	AGATCT	2 cut(s)	135, 209
Bme1390I	CCNGG	1 cut(s)	52
Bme18I	GGWCC	1 cut(s)	188
BmeT110I	CYCGRG	1 cut(s)	356
BmgT120I	GGNCC	1 cut(s)	188
BmiI	GGNNCC	1 cut(s)	35
BmrFI	CCNGG	1 cut(s)	52
BmsI	GCATC	3 cut(s)	119, 319, 390
BpmI	CTGGAG	1 cut(s)	287
BpuEI	CTTGAG	1 cut(s)	389
BsaJI	CCNNGG	1 cut(s)	50
Bsc4I	CCNNNNNNNGG	1 cut(s)	26
Bse3DI	GCAATG	1 cut(s)	374
BseBI	CCWGG	1 cut(s)	52
BseDI	CCNNGG	1 cut(s)	50
BseGI	GGATG	1 cut(s)	310
BseLI	CCNNNNNNNGG	1 cut(s)	26
BseMI	GCAATG	1 cut(s)	374
BseMII	CTCAG	2 cut(s)	194, 246
BseSI	GKGCMC	1 cut(s)	38
BshNI	GGYRCC	1 cut(s)	33
BsiHKCI	CYCGRG	1 cut(s)	356
BslI	CCNNNNNNNGG	1 cut(s)	26
BsoBI	CYCGRG	1 cut(s)	356
Bsp1286I	GDGCHC	1 cut(s)	38
Bsp143I	GATC	5 cut(s)	40, 135, 209, 332, 340
BspACI	CCGC	1 cut(s)	73
BspCNI	CTCAG	2 cut(s)	193, 247
BspHI	TCATGA	2 cut(s)	217, 343
BspLI	GGNNCC	1 cut(s)	35
BspPI	GGATC	1 cut(s)	327
BspT107I	GGYRCC	1 cut(s)	33
BspTI	CTTAAG	1 cut(s)	158
BsrDI	GCAATG	1 cut(s)	374
BssECI	CCNNGG	1 cut(s)	50
BssMI	GATC	5 cut(s)	40, 135, 209, 332, 340
Bst2UI	CCWGG	1 cut(s)	52
BstAFI	CTTAAG	1 cut(s)	158
BstC8I	GCNNGC	1 cut(s)	231
BstDEI	CTNAG	3 cut(s)	112, 180, 255
BstF5I	GGATG	1 cut(s)	310
BstHHI	GCGC	1 cut(s)	229
BstKTI	GATC	5 cut(s)	43, 138, 212, 335, 343
BstMBI	GATC	5 cut(s)	40, 135, 209, 332, 340
BstNI	CCWGG	1 cut(s)	52
BstNSI	RCATGY	1 cut(s)	227
BstSCI	CCNGG	1 cut(s)	50
BstSLI	GKGCMC	1 cut(s)	38
BstX2I	RGATCY	3 cut(s)	135, 209, 332
BstYI	RGATCY	3 cut(s)	135, 209, 332
BtsCI	GGATG	1 cut(s)	310
BtsIMutI	CAGTG	1 cut(s)	152
Cac8I	GCNNGC	1 cut(s)	231
CciI	TCATGA	2 cut(s)	217, 343
CfoI	GCGC	1 cut(s)	229
Cfr13I	GGNCC	1 cut(s)	188
Csp6I	GTAC	1 cut(s)	166
CviAII	CATG	3 cut(s)	218, 224, 344
CviJI	RGCY	5 cut(s)	111, 184, 247, 274, 385
CviKI_1	RGCY	5 cut(s)	111, 184, 247, 274, 385
CviQI	GTAC	1 cut(s)	166
DdeI	CTNAG	3 cut(s)	112, 180, 255
DpnI	GATC	5 cut(s)	42, 137, 211, 334, 342
DpnII	GATC	5 cut(s)	40, 135, 209, 332, 340
Eco47I	GGWCC	1 cut(s)	188
Eco88I	CYCGRG	1 cut(s)	356
EcoRII	CCWGG	1 cut(s)	50
FaeI	CATG	3 cut(s)	221, 227, 347
FaiI	YATR	4 cut(s)	219, 225, 345, 388
FalI	AAGNNNNNCTT	2 cut(s)	90, 122
FatI	CATG	3 cut(s)	217, 223, 343
FauI	CCCGC	1 cut(s)	66
FbaI	TGATCA	1 cut(s)	340
FokI	GGATG	1 cut(s)	297
FspBI	CTAG	2 cut(s)	239, 321
GlaI	GCGC	1 cut(s)	228
GsuI	CTGGAG	1 cut(s)	287
HhaI	GCGC	1 cut(s)	229
Hin1II	CATG	3 cut(s)	221, 227, 347
Hin6I	GCGC	1 cut(s)	227
HinP1I	GCGC	1 cut(s)	227
HinfI	GANTC	5 cut(s)	16, 46, 142, 262, 296
HphI	GGTGA	1 cut(s)	107
Hpy166II	GTNNAC	1 cut(s)	166
Hpy188I	TCNGA	5 cut(s)	21, 45, 256, 301, 337
Hpy188III	TCNNGA	7 cut(s)	139, 218, 239, 266, 344, 356, 358
Hpy8I	GTNNAC	1 cut(s)	166
HpyAV	CCTTC	1 cut(s)	298
HpyCH4V	TGCA	2 cut(s)	310, 379
HpyF3I	CTNAG	3 cut(s)	112, 180, 255
Hsp92II	CATG	3 cut(s)	221, 227, 347
HspAI	GCGC	1 cut(s)	227
Ksp22I	TGATCA	1 cut(s)	340
Kzo9I	GATC	5 cut(s)	40, 135, 209, 332, 340
LpnPI	CCDG	4 cut(s)	37, 51, 64, 251
LweI	GCATC	3 cut(s)	119, 319, 390
MaeI	CTAG	2 cut(s)	239, 321
MalI	GATC	5 cut(s)	42, 137, 211, 334, 342
MboI	GATC	5 cut(s)	40, 135, 209, 332, 340
MboII	GAAGA	1 cut(s)	110
MflI	RGATCY	3 cut(s)	135, 209, 332
MhlI	GDGCHC	1 cut(s)	38
MluCI	AATT	2 cut(s)	86, 284
MnlI	CCTC	1 cut(s)	86
MroXI	GAANNNNTTC	1 cut(s)	351
MseI	TTAA	2 cut(s)	125, 159
MslI	CAYNNNNRTG	2 cut(s)	222, 315
MspCI	CTTAAG	1 cut(s)	158
MspR9I	CCNGG	1 cut(s)	52
MvaI	CCWGG	1 cut(s)	52
NdeII	GATC	5 cut(s)	40, 135, 209, 332, 340
NlaIII	CATG	3 cut(s)	221, 227, 347
NlaIV	GGNNCC	1 cut(s)	35
NspI	RCATGY	1 cut(s)	227
PaeR7I	CTCGAG	1 cut(s)	356
PagI	TCATGA	2 cut(s)	217, 343
PdmI	GAANNNNTTC	1 cut(s)	351
PfeI	GAWTC	5 cut(s)	16, 46, 142, 262, 296
Psp6I	CCWGG	1 cut(s)	50
PspGI	CCWGG	1 cut(s)	50
PspN4I	GGNNCC	1 cut(s)	35
PspPI	GGNCC	1 cut(s)	188
PsuI	RGATCY	3 cut(s)	135, 209, 332
RsaI	GTAC	1 cut(s)	167
RsaNI	GTAC	1 cut(s)	166
RseI	CAYNNNNRTG	2 cut(s)	222, 315
SaqAI	TTAA	2 cut(s)	125, 159
Sau3AI	GATC	5 cut(s)	40, 135, 209, 332, 340
Sau96I	GGNCC	1 cut(s)	188
ScrFI	CCNGG	1 cut(s)	52
SduI	GDGCHC	1 cut(s)	38
SetI	ASST	8 cut(s)	56, 97, 165, 186, 249, 276, 309, 387
SfaNI	GCATC	3 cut(s)	119, 319, 390
Sfr274I	CTCGAG	1 cut(s)	356
SinI	GGWCC	1 cut(s)	188
SlaI	CTCGAG	1 cut(s)	356
SmiMI	CAYNNNNRTG	2 cut(s)	222, 315
SmlI	CTYRAG	3 cut(s)	158, 356, 404
SmoI	CTYRAG	3 cut(s)	158, 356, 404
Sse9I	AATT	2 cut(s)	86, 284
SsiI	CCGC	1 cut(s)	73
SspMI	CTAG	2 cut(s)	239, 321
StyD4I	CCNGG	1 cut(s)	50
TaqI	TCGA	2 cut(s)	14, 357
TasI	AATT	2 cut(s)	86, 284
TatI	WGTACW	1 cut(s)	165
TfiI	GAWTC	5 cut(s)	16, 46, 142, 262, 296
Tru1I	TTAA	2 cut(s)	125, 159
Tru9I	TTAA	2 cut(s)	125, 159
TscAI	CASTG	1 cut(s)	152
TspDTI	ATGAA	5 cut(s)	117, 234, 279, 360, 363
TspGWI	ACGGA	1 cut(s)	135
TspRI	CASTG	1 cut(s)	152
Vha464I	CTTAAG	1 cut(s)	158
VpaK11BI	GGWCC	1 cut(s)	188
XapI	RAATTY	1 cut(s)	284
XbaI	TCTAGA	1 cut(s)	238
XceI	RCATGY	1 cut(s)	227
XcmI	CCANNNNNNNNNTGG	1 cut(s)	58
XhoI	CTCGAG	1 cut(s)	356
XmnI	GAANNNNTTC	1 cut(s)	351
XspI	CTAG	2 cut(s)	239, 321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.