Rmu_co8050506.1_g000001

Calmodulin-binding transcription activator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8050506.1
OG0009645
Physical Location & Seq
Forward (+)
1 .. 245
245 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8050506.1_g000001.1.cds

Sequence Viewer

Length: 245 bp
aagaactagaagatgtggatgagccacaaatacagtccggttctgaggcctactgggatactgttcaaagtgagaatgaggttgacgactccagtgttcccctccaagtatgcttggattgctatatgctggggccttctctttctcatgaccagctctttagcattgttgatttctcatcaaactgggcatatgaatactctgaaatcaaggtaatccactcttatatcaatgcaagtctttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000981 GO:0000982 GO:0001077 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010150 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0031349 GO:0032501 GO:0032502 GO:0032774 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070417 GO:0071704 GO:0080090 GO:0080134 GO:0090304 GO:0090693 GO:0097159 GO:0097659 GO:0098542 GO:0099402 GO:0140110 GO:1900367 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:2000068 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 CG-1 IQ TIG

Protein Analysis

80

Amino Acids

9.08

Weight (kDa)

4.05

Isoelectric Point (pI)

45.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 1 cut(s) 67
AluBI AGCT 1 cut(s) 156
AluI AGCT 1 cut(s) 156
AoxI GGCC 2 cut(s) 47, 133
AspS9I GGNCC 1 cut(s) 133
BciVI GTATCC 1 cut(s) 51
BfaI CTAG 1 cut(s) 7
BfuI GTATCC 1 cut(s) 51
BmgT120I GGNCC 1 cut(s) 133
BmiI GGNNCC 1 cut(s) 134
BmrI ACTGGG 2 cut(s) 63, 195
BmuI ACTGGG 2 cut(s) 63, 195
BpmI CTGGAG 1 cut(s) 75
BsaWI WCCGGW 1 cut(s) 37
Bse1I ACTGG 3 cut(s) 58, 92, 190
BseGI GGATG 1 cut(s) 24
BseMII CTCAG 1 cut(s) 35
BseNI ACTGG 3 cut(s) 58, 92, 190
BseYI CCCAGC 1 cut(s) 129
BshFI GGCC 2 cut(s) 49, 135
BsiSI CCGG 1 cut(s) 38
BsnI GGCC 2 cut(s) 49, 135
BspANI GGCC 2 cut(s) 49, 135
BspCNI CTCAG 1 cut(s) 36
BspHI TCATGA 1 cut(s) 147
BspLI GGNNCC 1 cut(s) 134
BsrI ACTGG 3 cut(s) 58, 92, 190
Bst4CI ACNGT 2 cut(s) 35, 63
BstDEI CTNAG 1 cut(s) 44
BstF5I GGATG 1 cut(s) 24
BstMWI GCNNNNNNNGC 1 cut(s) 119
BsuI GTATCC 1 cut(s) 51
BsuRI GGCC 2 cut(s) 49, 135
BtsCI GGATG 1 cut(s) 24
BtsIMutI CAGTG 1 cut(s) 99
CciI TCATGA 1 cut(s) 147
Cfr13I GGNCC 1 cut(s) 133
CviAII CATG 1 cut(s) 148
CviJI RGCY 4 cut(s) 24, 49, 135, 156
CviKI_1 RGCY 4 cut(s) 24, 49, 135, 156
DdeI CTNAG 1 cut(s) 44
Eco147I AGGCCT 1 cut(s) 49
EcoO109I RGGNCCY 1 cut(s) 133
FaeI CATG 1 cut(s) 151
FaiI YATR 7 cut(s) 111, 125, 127, 149, 192, 194, 227
FatI CATG 1 cut(s) 147
FauNDI CATATG 1 cut(s) 192
FokI GGATG 1 cut(s) 31
FspBI CTAG 1 cut(s) 7
GsaI CCCAGC 1 cut(s) 133
GsuI CTGGAG 1 cut(s) 75
HaeIII GGCC 2 cut(s) 49, 135
HapII CCGG 1 cut(s) 38
Hin1II CATG 1 cut(s) 151
HincII GTYRAC 1 cut(s) 84
HindII GTYRAC 1 cut(s) 84
HinfI GANTC 1 cut(s) 88
HpaII CCGG 1 cut(s) 38
Hpy166II GTNNAC 1 cut(s) 84
Hpy188I TCNGA 2 cut(s) 45, 204
Hpy188III TCNNGA 1 cut(s) 148
Hpy8I GTNNAC 1 cut(s) 84
HpyAV CCTTC 1 cut(s) 146
HpyCH4III ACNGT 2 cut(s) 35, 63
HpyCH4V TGCA 1 cut(s) 235
HpyF10VI GCNNNNNNNGC 1 cut(s) 119
HpyF3I CTNAG 1 cut(s) 44
Hsp92II CATG 1 cut(s) 151
LpnPI CCDG 6 cut(s) 39, 51, 105, 115, 166, 171
MaeI CTAG 1 cut(s) 7
MboII GAAGA 1 cut(s) 22
MlyI GAGTC 1 cut(s) 82
MnlI CCTC 3 cut(s) 39, 72, 112
MspI CCGG 1 cut(s) 38
MwoI GCNNNNNNNGC 1 cut(s) 119
NdeI CATATG 1 cut(s) 192
NlaIII CATG 1 cut(s) 151
NlaIV GGNNCC 1 cut(s) 134
PagI TCATGA 1 cut(s) 147
PceI AGGCCT 1 cut(s) 49
PleI GAGTC 1 cut(s) 82
PpsI GAGTC 1 cut(s) 82
PspFI CCCAGC 1 cut(s) 129
PspN4I GGNNCC 1 cut(s) 134
PspPI GGNCC 1 cut(s) 133
Sau96I GGNCC 1 cut(s) 133
SchI GAGTC 1 cut(s) 82
SetI ASST 3 cut(s) 83, 158, 215
SseBI AGGCCT 1 cut(s) 49
SspMI CTAG 1 cut(s) 7
StuI AGGCCT 1 cut(s) 49
TaaI ACNGT 2 cut(s) 35, 63
TscAI CASTG 1 cut(s) 99
TspDTI ATGAA 1 cut(s) 209
TspRI CASTG 1 cut(s) 99
XspI CTAG 1 cut(s) 7
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.