Rmu_sc0007415.1_g000002

Calmodulin-binding transcription activator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007415.1
OG0009645
Physical Location & Seq
Reverse (-)
4515 .. 5187
673 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007415.1_g000002.1.cds

Sequence Viewer

Length: 537 bp
atgcgtaaagaactagaagatgtggatgagccacaaatacagtccggttctgaggcctactgggatactgttcaaagtgagaatgaggttgacgactccagtgttcccctccaagtatgcttggattgctatatgctggggccttctctttttcatgaccagctctttagcattgttgatttctcatcaaactgggcatatgaatactctgaaatcaaggttttgatcacaggaagatttttgaaaaatcaacatgcggaaagttgtaaatggtcatgtatgtttggggaagttgaagttcctgctgaggttatagtagatggtgttctttattgttatactcccatacacaagcctggaagcgttcctttctatgtgacatgttccaataggatggcttgtagtgaattaagggaatttgaataccgagttgcccaaactcaagatgttgattctaaagattattttagttactgctcaaaaacgttaaacaaactatttctcaagatgttgattctaaagattatttcgttctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000981 GO:0000982 GO:0001077 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010150 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0031349 GO:0032501 GO:0032502 GO:0032774 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070417 GO:0071704 GO:0080090 GO:0080134 GO:0090304 GO:0090693 GO:0097159 GO:0097659 GO:0098542 GO:0099402 GO:0140110 GO:1900367 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:2000068 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 CG-1 IQ TIG

Protein Analysis

178

Amino Acids

20.56

Weight (kDa)

4.59

Isoelectric Point (pI)

42.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 257
AclI AACGTT 1 cut(s) 485
AcsI RAATTY 1 cut(s) 416
AflIII ACRYGT 1 cut(s) 380
AgsI TTSAA 4 cut(s) 74, 244, 296, 422
AjnI CCWGG 1 cut(s) 355
AluBI AGCT 1 cut(s) 163
AluI AGCT 1 cut(s) 163
AoxI GGCC 2 cut(s) 54, 140
ApoI RAATTY 1 cut(s) 416
AspS9I GGNCC 1 cut(s) 140
BbvCI CCTCAGC 1 cut(s) 306
BccI CCATC 2 cut(s) 314, 388
BciT130I CCWGG 1 cut(s) 357
BciVI GTATCC 1 cut(s) 58
BclI TGATCA 1 cut(s) 225
BfaI CTAG 1 cut(s) 14
BfuI GTATCC 1 cut(s) 58
Bme1390I CCNGG 1 cut(s) 357
BmgT120I GGNCC 1 cut(s) 140
BmiI GGNNCC 1 cut(s) 141
BmrFI CCNGG 1 cut(s) 357
BmrI ACTGGG 2 cut(s) 70, 202
BmuI ACTGGG 2 cut(s) 70, 202
BpmI CTGGAG 1 cut(s) 82
Bpu10I CCTNAGC 1 cut(s) 306
BpuEI CTTGAG 2 cut(s) 426, 488
BsaWI WCCGGW 1 cut(s) 44
Bse1I ACTGG 3 cut(s) 65, 99, 197
BseBI CCWGG 1 cut(s) 357
BseGI GGATG 2 cut(s) 31, 399
BseMII CTCAG 2 cut(s) 42, 297
BseNI ACTGG 3 cut(s) 65, 99, 197
BseYI CCCAGC 1 cut(s) 136
BshFI GGCC 2 cut(s) 56, 142
BsiSI CCGG 1 cut(s) 45
BsnI GGCC 2 cut(s) 56, 142
Bsp143I GATC 1 cut(s) 225
BspACI CCGC 1 cut(s) 257
BspANI GGCC 2 cut(s) 56, 142
BspCNI CTCAG 2 cut(s) 43, 298
BspHI TCATGA 1 cut(s) 154
BspLI GGNNCC 1 cut(s) 141
BsrI ACTGG 3 cut(s) 65, 99, 197
BssMI GATC 1 cut(s) 225
Bst2UI CCWGG 1 cut(s) 357
Bst4CI ACNGT 2 cut(s) 42, 70
BstDEI CTNAG 2 cut(s) 51, 306
BstF5I GGATG 2 cut(s) 31, 399
BstKTI GATC 1 cut(s) 228
BstMBI GATC 1 cut(s) 225
BstMWI GCNNNNNNNGC 1 cut(s) 126
BstNI CCWGG 1 cut(s) 357
BstNSI RCATGY 2 cut(s) 257, 384
BstSCI CCNGG 1 cut(s) 355
BstXI CCANNNNNNTGG 1 cut(s) 394
BsuI GTATCC 1 cut(s) 58
BsuRI GGCC 2 cut(s) 56, 142
BtsCI GGATG 2 cut(s) 31, 399
BtsIMutI CAGTG 1 cut(s) 106
CciI TCATGA 1 cut(s) 154
Cfr13I GGNCC 1 cut(s) 140
CviAII CATG 4 cut(s) 155, 254, 276, 381
CviJI RGCY 6 cut(s) 31, 56, 142, 163, 355, 398
CviKI_1 RGCY 6 cut(s) 31, 56, 142, 163, 355, 398
DdeI CTNAG 2 cut(s) 51, 306
DpnI GATC 1 cut(s) 227
DpnII GATC 1 cut(s) 225
Eco147I AGGCCT 1 cut(s) 56
EcoO109I RGGNCCY 1 cut(s) 140
EcoRII CCWGG 1 cut(s) 355
FaeI CATG 4 cut(s) 158, 257, 279, 384
FalI AAGNNNNNCTT 2 cut(s) 352, 384
FatI CATG 4 cut(s) 154, 253, 275, 380
FauNDI CATATG 1 cut(s) 199
FbaI TGATCA 1 cut(s) 225
FokI GGATG 2 cut(s) 38, 406
FspBI CTAG 1 cut(s) 14
GsaI CCCAGC 1 cut(s) 140
GsuI CTGGAG 1 cut(s) 82
HaeIII GGCC 2 cut(s) 56, 142
HapII CCGG 1 cut(s) 45
Hin1II CATG 4 cut(s) 158, 257, 279, 384
HincII GTYRAC 1 cut(s) 91
HindII GTYRAC 1 cut(s) 91
HinfI GANTC 3 cut(s) 95, 452, 514
HpaII CCGG 1 cut(s) 45
Hpy166II GTNNAC 1 cut(s) 91
Hpy188I TCNGA 2 cut(s) 52, 211
Hpy188III TCNNGA 3 cut(s) 155, 443, 505
Hpy8I GTNNAC 1 cut(s) 91
HpyAV CCTTC 1 cut(s) 153
HpyCH4III ACNGT 2 cut(s) 42, 70
HpyCH4IV ACGT 1 cut(s) 485
HpyF10VI GCNNNNNNNGC 1 cut(s) 126
HpyF3I CTNAG 2 cut(s) 51, 306
HpySE526I ACGT 1 cut(s) 485
Hsp92II CATG 4 cut(s) 158, 257, 279, 384
Ksp22I TGATCA 1 cut(s) 225
Kzo9I GATC 1 cut(s) 225
MaeI CTAG 1 cut(s) 14
MaeII ACGT 1 cut(s) 485
MaeIII GTNAC 2 cut(s) 376, 470
MalI GATC 1 cut(s) 227
MboI GATC 1 cut(s) 225
MboII GAAGA 2 cut(s) 29, 246
MluCI AATT 2 cut(s) 407, 416
MlyI GAGTC 1 cut(s) 89
MnlI CCTC 4 cut(s) 46, 79, 119, 301
MseI TTAA 2 cut(s) 410, 488
MspI CCGG 1 cut(s) 45
MspR9I CCNGG 1 cut(s) 357
MvaI CCWGG 1 cut(s) 357
MwoI GCNNNNNNNGC 1 cut(s) 126
NdeI CATATG 1 cut(s) 199
NdeII GATC 1 cut(s) 225
NlaIII CATG 4 cut(s) 158, 257, 279, 384
NlaIV GGNNCC 1 cut(s) 141
NmuCI GTSAC 1 cut(s) 376
NspI RCATGY 2 cut(s) 257, 384
PagI TCATGA 1 cut(s) 154
PceI AGGCCT 1 cut(s) 56
PciI ACATGT 1 cut(s) 380
PfeI GAWTC 2 cut(s) 452, 514
PleI GAGTC 1 cut(s) 89
PpsI GAGTC 1 cut(s) 89
PscI ACATGT 1 cut(s) 380
Psp1406I AACGTT 1 cut(s) 485
Psp6I CCWGG 1 cut(s) 355
PspFI CCCAGC 1 cut(s) 136
PspGI CCWGG 1 cut(s) 355
PspN4I GGNNCC 1 cut(s) 141
PspPI GGNCC 1 cut(s) 140
PsrI GAACNNNNNNTAC 2 cut(s) 309, 341
SaqAI TTAA 2 cut(s) 410, 488
Sau3AI GATC 1 cut(s) 225
Sau96I GGNCC 1 cut(s) 140
SchI GAGTC 1 cut(s) 89
ScrFI CCNGG 1 cut(s) 357
SetI ASST 5 cut(s) 90, 165, 222, 312, 488
SmlI CTYRAG 2 cut(s) 441, 503
SmoI CTYRAG 2 cut(s) 441, 503
Sse9I AATT 2 cut(s) 407, 416
SseBI AGGCCT 1 cut(s) 56
SsiI CCGC 1 cut(s) 257
SspMI CTAG 1 cut(s) 14
StuI AGGCCT 1 cut(s) 56
StyD4I CCNGG 1 cut(s) 355
TaaI ACNGT 2 cut(s) 42, 70
TaiI ACGT 1 cut(s) 488
TasI AATT 2 cut(s) 407, 416
TfiI GAWTC 2 cut(s) 452, 514
Tru1I TTAA 2 cut(s) 410, 488
Tru9I TTAA 2 cut(s) 410, 488
TscAI CASTG 1 cut(s) 106
TseFI GTSAC 1 cut(s) 376
Tsp45I GTSAC 1 cut(s) 376
TspDTI ATGAA 2 cut(s) 143, 216
TspRI CASTG 1 cut(s) 106
XapI RAATTY 1 cut(s) 416
XceI RCATGY 2 cut(s) 257, 384
XspI CTAG 1 cut(s) 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.