Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0005107

Physical Location & Seq

Genomic Coordinates Reverse (-)

16907008 .. 16913843

Gene Structure 6836 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g25120.t8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGGCACTCTCACTCTCCACACCCACTTCCACTCTCCACCGTTTCCACTTGTTGTCTTCTTGTCACTCCAATCAGCTATTCCCAGTCTCACTCTCCCTCCCAATCCCCACCCGCACGCTCCTCCTTATCTCCTGCTGCGCCGCCGCCAAGCCCCACACCGGCCCCGTCAACAAAAACCGCTCGCCTCCCTCCCCCGCCAACAACAAAACCAAGGGAAAGAAAAAGCGTAAGGGGAAGGATGTCAGCATTAGTAAGGTTGAAATTGTTGACGATGATTTCGGGGGTGAGGATTCTGATTCCAGGTCGTTGAGTTATAATCCGACGCCGCTGCCGAAGCCGCCGGCTGGGTTTGTGGTGGATGATCACGGCAGGGTGCTCATGGCTTCCTCTAAGCGAATCGCCTCTATTGTTGATCCTACCAATAATTTCCCATTAGAGTGCGTTATAAGGAGAGTATTCAGAAGCTCACGAGGGGATGAATGTATGCTGCTTTGTCCTGTTGACACGCCTGTTCAGATATTGAAGAGCACCAATATAGATGGCTGGTCAGCGGTCACTGATGAAGAAGTTGAAGCTATTCTTCCCTCCGCCGCTTATGCCCTTGCTAAGATACACATGCATCTTGTACATAGCGGATTCTGTTATACAGCAAGAGGAGGATTTTGTTACTCAGATGATGACATATTTGATTTTCGCACAGATGATGGCGAAGATGTAGATGGCTTACCAACTGAGGGTGTCGAGATTACATGTTTCCATTTAGATGGTGCGCATTACATGATTTATACACCTTCTGACCCACTTCTCTTTGTAGTCGTAAAGGACAATGATAGTCTATTGCAAATTGCTGATGATGATCTGCTGGAGGACCCTGCTATCATTAGTGCCATAGATGAGGAGACCGAGTTTAACGCATTGGTGGAAGAAGAAGCAGCTCTTCTTGATTCATTGCTAGGAAAAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3727

Protein Analysis

322

Amino Acids

35.02

Weight (kDa)

4.8

Isoelectric Point (pI)

53.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005107)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33480
fragaria_vesca	FvH4_1g25120 FvH4_1g25120 FvH4_1g25120 FvH4_1g25120 FvH4_1g25120 FvH4_1g25120 FvH4_1g25120 FvH4_1g25120
malus_domestica	MD00G1064700.v1.1
prunus_persica	Prupe.4G278200_v2.0.a1 Prupe.4G278200_v2.0.a1 Prupe.4G278200_v2.0.a1
pyrus_communis	pycom520g00290
rosa_chinensis	RchiOBHm_Chr2g0122781
rosa_laevigata	RLG00000018711
rosa_multiflora	Rmu_sc0008259.1_g000002 Rmu_sc0019417.1_g000001 Rmu_sc0032021.1_g000001 Rmu_sc0039730.1_g000001
rosa_roxburghii	Rroxscaffold_2G00121230
rosa_rugosa	Rorug02G0242400 Rorug02G0242500.1
rosa_samantha	Rh2AG300400 Rh2BG308500 Rh2CG287300 Rh2DG324600
rosa_wichuraiana	Rw2G023880 Rw2G024090 Rw2G024120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	315, 446
Acc16I	TGCGCA	1 cut(s)	771
AccBSI	CCGCTC	1 cut(s)	180
AclWI	GGATC	1 cut(s)	407
AcyI	GRCGYC	1 cut(s)	323
AfaI	GTAC	1 cut(s)	627
AfiI	CCNNNNNNNGG	3 cut(s)	158, 344, 734
AflIII	ACRYGT	1 cut(s)	749
AgsI	TTSAA	3 cut(s)	260, 523, 572
AjnI	CCWGG	1 cut(s)	299
AjuI	GAANNNNNNNTTGG	2 cut(s)	62, 94
AluBI	AGCT	4 cut(s)	76, 465, 575, 935
AluI	AGCT	4 cut(s)	76, 465, 575, 935
Alw21I	GWGCWC	2 cut(s)	378, 530
Alw26I	GTCTC	2 cut(s)	91, 893
AlwI	GGATC	1 cut(s)	407
AoxI	GGCC	1 cut(s)	160
ApeKI	GCWGC	4 cut(s)	135, 328, 487, 932
ArsI	GACNNNNNNTTYG	2 cut(s)	260, 292
Asp700I	GAANNNNTTC	1 cut(s)	576
AspLEI	GCGC	2 cut(s)	140, 772
AspS9I	GGNCC	2 cut(s)	161, 868
AsuHPI	GGTGA	1 cut(s)	296
AvaII	GGWCC	1 cut(s)	868
BauI	CACGAG	1 cut(s)	468
BbsI	GAAGAC	1 cut(s)	48
Bbv12I	GWGCWC	2 cut(s)	378, 530
BbvI	GCAGC	4 cut(s)	122, 315, 474, 944
BccI	CCATC	4 cut(s)	533, 698, 713, 758
BceAI	ACGGC	1 cut(s)	382
BcgI	CGANNNNNNTGC	2 cut(s)	310, 344
BciT130I	CCWGG	1 cut(s)	301
BclI	TGATCA	1 cut(s)	361
BcoDI	GTCTC	2 cut(s)	91, 893
BfaI	CTAG	1 cut(s)	953
BisI	GCNGC	9 cut(s)	136, 141, 144, 326, 329, 338, 488, 591, 933
BlsI	GCNGC	9 cut(s)	137, 142, 145, 327, 330, 339, 489, 592, 934
Bme1390I	CCNGG	1 cut(s)	301
Bme18I	GGWCC	1 cut(s)	868
BmgT120I	GGNCC	2 cut(s)	161, 868
BmiI	GGNNCC	2 cut(s)	163, 870
BmrFI	CCNGG	1 cut(s)	301
BmrI	ACTGGG	1 cut(s)	77
BmsI	GCATC	1 cut(s)	628
BmuI	ACTGGG	1 cut(s)	77
BpiI	GAAGAC	1 cut(s)	48
BpmI	CTGGAG	1 cut(s)	884
BsaBI	GATNNNNATC	1 cut(s)	855
BsaHI	GRCGYC	1 cut(s)	323
BsaI	GGTCTC	1 cut(s)	893
BsaJI	CCNNGG	1 cut(s)	210
BsaXI	ACNNNNNCTCC	4 cut(s)	81, 111, 890, 920
Bsc4I	CCNNNNNNNGG	3 cut(s)	158, 344, 734
Bse118I	RCCGGY	2 cut(s)	158, 340
Bse1I	ACTGG	1 cut(s)	83
Bse3DI	GCAATG	1 cut(s)	947
Bse8I	GATNNNNATC	1 cut(s)	855
BseBI	CCWGG	1 cut(s)	301
BseDI	CCNNGG	1 cut(s)	210
BseGI	GGATG	3 cut(s)	244, 364, 481
BseJI	GATNNNNATC	1 cut(s)	855
BseLI	CCNNNNNNNGG	3 cut(s)	158, 344, 734
BseMI	GCAATG	1 cut(s)	947
BseMII	CTCAG	2 cut(s)	684, 723
BseNI	ACTGG	1 cut(s)	83
BseRI	GAGGAG	3 cut(s)	110, 669, 911
BseXI	GCAGC	4 cut(s)	122, 315, 474, 944
BseYI	CCCAGC	1 cut(s)	344
BshFI	GGCC	1 cut(s)	162
BsiHKAI	GWGCWC	2 cut(s)	378, 530
BsiSI	CCGG	2 cut(s)	159, 341
BslI	CCNNNNNNNGG	3 cut(s)	158, 344, 734
BsmAI	GTCTC	2 cut(s)	91, 893
BsnI	GGCC	1 cut(s)	162
Bso31I	GGTCTC	1 cut(s)	893
Bsp1286I	GDGCHC	2 cut(s)	378, 530
Bsp1407I	TGTACA	1 cut(s)	625
Bsp143I	GATC	3 cut(s)	361, 412, 856
BspANI	GGCC	1 cut(s)	162
BspCNI	CTCAG	2 cut(s)	683, 724
BspLI	GGNNCC	2 cut(s)	163, 870
BspPI	GGATC	1 cut(s)	407
BspQI	GCTCTTC	2 cut(s)	518, 942
BspTNI	GGTCTC	1 cut(s)	893
BsrBI	CCGCTC	1 cut(s)	180
BsrDI	GCAATG	1 cut(s)	947
BsrFI	RCCGGY	2 cut(s)	158, 340
BsrGI	TGTACA	1 cut(s)	625
BsrI	ACTGG	1 cut(s)	83
BssAI	RCCGGY	2 cut(s)	158, 340
BssECI	CCNNGG	1 cut(s)	210
BssMI	GATC	3 cut(s)	361, 412, 856
BssNI	GRCGYC	1 cut(s)	323
BssSI	CACGAG	1 cut(s)	468
BssT1I	CCWWGG	1 cut(s)	210
Bst2BI	CACGAG	1 cut(s)	468
Bst2UI	CCWGG	1 cut(s)	301
Bst4CI	ACNGT	1 cut(s)	41
Bst6I	CTCTTC	2 cut(s)	518, 942
BstACI	GRCGYC	1 cut(s)	323
BstAUI	TGTACA	1 cut(s)	625
BstC8I	GCNNGC	3 cut(s)	116, 182, 342
BstDEI	CTNAG	4 cut(s)	390, 606, 670, 732
BstF5I	GGATG	3 cut(s)	244, 364, 481
BstHHI	GCGC	2 cut(s)	140, 772
BstKTI	GATC	3 cut(s)	364, 415, 859
BstMAI	GTCTC	2 cut(s)	91, 893
BstMBI	GATC	3 cut(s)	361, 412, 856
BstMWI	GCNNNNNNNGC	3 cut(s)	334, 337, 596
BstNI	CCWGG	1 cut(s)	301
BstNSI	RCATGY	2 cut(s)	619, 753
BstSCI	CCNGG	1 cut(s)	299
BstV1I	GCAGC	4 cut(s)	122, 315, 474, 944
BstV2I	GAAGAC	1 cut(s)	48
BstXI	CCANNNNNNTGG	1 cut(s)	764
BsuRI	GGCC	1 cut(s)	162
BtsCI	GGATG	3 cut(s)	244, 364, 481
BtsIMutI	CAGTG	1 cut(s)	555
Cac8I	GCNNGC	3 cut(s)	116, 182, 342
CfoI	GCGC	2 cut(s)	140, 772
Cfr10I	RCCGGY	2 cut(s)	158, 340
Cfr13I	GGNCC	2 cut(s)	161, 868
CseI	GACGC	1 cut(s)	331
Csp6I	GTAC	1 cut(s)	626
CviAII	CATG	4 cut(s)	379, 616, 750, 778
CviQI	GTAC	1 cut(s)	626
DdeI	CTNAG	4 cut(s)	390, 606, 670, 732
DpnI	GATC	3 cut(s)	363, 414, 858
DpnII	GATC	3 cut(s)	361, 412, 856
Eam1104I	CTCTTC	2 cut(s)	518, 942
EarI	CTCTTC	2 cut(s)	518, 942
EciI	GGCGGA	1 cut(s)	577
Eco130I	CCWWGG	1 cut(s)	210
Eco31I	GGTCTC	1 cut(s)	893
Eco47I	GGWCC	1 cut(s)	868
EcoO109I	RGGNCCY	1 cut(s)	868
EcoRII	CCWGG	1 cut(s)	299
EcoT14I	CCWWGG	1 cut(s)	210
EcoT22I	ATGCAT	1 cut(s)	621
ErhI	CCWWGG	1 cut(s)	210
FaeI	CATG	4 cut(s)	382, 619, 753, 781
FalI	AAGNNNNNCTT	4 cut(s)	564, 596, 921, 953
FatI	CATG	4 cut(s)	378, 615, 749, 777
FauI	CCCGC	2 cut(s)	119, 202
FbaI	TGATCA	1 cut(s)	361
Fnu4HI	GCNGC	9 cut(s)	136, 141, 144, 326, 329, 338, 488, 591, 933
FokI	GGATG	3 cut(s)	251, 371, 488
Fsp4HI	GCNGC	9 cut(s)	136, 141, 144, 326, 329, 338, 488, 591, 933
FspAI	RTGCGCAY	1 cut(s)	771
FspBI	CTAG	1 cut(s)	953
FspI	TGCGCA	1 cut(s)	771
GlaI	GCGC	2 cut(s)	139, 771
GluI	GCNGC	9 cut(s)	136, 141, 144, 326, 329, 338, 488, 591, 933
GsaI	CCCAGC	1 cut(s)	348
GsuI	CTGGAG	1 cut(s)	884
HaeIII	GGCC	1 cut(s)	162
HapII	CCGG	2 cut(s)	159, 341
HgaI	GACGC	1 cut(s)	331
HhaI	GCGC	2 cut(s)	140, 772
Hin1I	GRCGYC	1 cut(s)	323
Hin1II	CATG	4 cut(s)	382, 619, 753, 781
Hin6I	GCGC	2 cut(s)	138, 770
HinP1I	GCGC	2 cut(s)	138, 770
HincII	GTYRAC	3 cut(s)	169, 268, 502
HindII	GTYRAC	3 cut(s)	169, 268, 502
HinfI	GANTC	5 cut(s)	290, 296, 396, 636, 944
HpaII	CCGG	2 cut(s)	159, 341
HphI	GGTGA	1 cut(s)	296
Hpy166II	GTNNAC	3 cut(s)	169, 268, 502
Hpy188I	TCNGA	6 cut(s)	295, 321, 461, 516, 673, 796
Hpy188III	TCNNGA	3 cut(s)	468, 742, 941
Hpy8I	GTNNAC	3 cut(s)	169, 268, 502
Hpy99I	CGWCG	1 cut(s)	325
HpyAV	CCTTC	2 cut(s)	229, 801
HpyCH4III	ACNGT	1 cut(s)	41
HpyCH4V	TGCA	2 cut(s)	619, 841
HpyF10VI	GCNNNNNNNGC	3 cut(s)	334, 337, 596
HpyF3I	CTNAG	4 cut(s)	390, 606, 670, 732
Hsp92I	GRCGYC	1 cut(s)	323
Hsp92II	CATG	4 cut(s)	382, 619, 753, 781
HspAI	GCGC	2 cut(s)	138, 770
KroI	GCCGGC	1 cut(s)	340
KroNI	GCCGGC	1 cut(s)	342
Ksp22I	TGATCA	1 cut(s)	361
Kzo9I	GATC	3 cut(s)	361, 412, 856
LguI	GCTCTTC	2 cut(s)	518, 942
LmnI	GCTCC	1 cut(s)	123
Lsp1109I	GCAGC	4 cut(s)	122, 315, 474, 944
LweI	GCATC	1 cut(s)	628
MaeI	CTAG	1 cut(s)	953
MaeIII	GTNAC	3 cut(s)	62, 553, 665
MalI	GATC	3 cut(s)	363, 414, 858
MbiI	CCGCTC	1 cut(s)	180
MboI	GATC	3 cut(s)	361, 412, 856
MboII	GAAGA	8 cut(s)	48, 535, 572, 575, 722, 929, 935, 938
MhlI	GDGCHC	2 cut(s)	378, 530
MluCI	AATT	3 cut(s)	261, 424, 843
MmeI	TCCRAC	1 cut(s)	344
Mph1103I	ATGCAT	1 cut(s)	621
MroNI	GCCGGC	1 cut(s)	340
MroXI	GAANNNNTTC	1 cut(s)	576
MseI	TTAA	1 cut(s)	909
MslI	CAYNNNNRTG	2 cut(s)	436, 762
MspA1I	CMGCKG	2 cut(s)	328, 551
MspI	CCGG	2 cut(s)	159, 341
MspR9I	CCNGG	1 cut(s)	301
MvaI	CCWGG	1 cut(s)	301
MwoI	GCNNNNNNNGC	3 cut(s)	334, 337, 596
NaeI	GCCGGC	1 cut(s)	342
NdeII	GATC	3 cut(s)	361, 412, 856
NgoMIV	GCCGGC	1 cut(s)	340
NlaIII	CATG	4 cut(s)	382, 619, 753, 781
NlaIV	GGNNCC	2 cut(s)	163, 870
NmuCI	GTSAC	2 cut(s)	62, 553
NsbI	TGCGCA	1 cut(s)	771
NsiI	ATGCAT	1 cut(s)	621
NspI	RCATGY	2 cut(s)	619, 753
PciI	ACATGT	1 cut(s)	749
PciSI	GCTCTTC	2 cut(s)	518, 942
PcsI	WCGNNNNNNNCGW	1 cut(s)	329
PdiI	GCCGGC	1 cut(s)	342
PdmI	GAANNNNTTC	1 cut(s)	576
PfeI	GAWTC	5 cut(s)	290, 296, 396, 636, 944
PkrI	GCNGC	9 cut(s)	137, 142, 145, 327, 330, 339, 489, 592, 934
PpuMI	RGGWCCY	1 cut(s)	868
PscI	ACATGT	1 cut(s)	749
PsiI	TTATAA	2 cut(s)	315, 446
Psp5II	RGGWCCY	1 cut(s)	868
Psp6I	CCWGG	1 cut(s)	299
PspFI	CCCAGC	1 cut(s)	344
PspGI	CCWGG	1 cut(s)	299
PspN4I	GGNNCC	2 cut(s)	163, 870
PspPI	GGNCC	2 cut(s)	161, 868
PspPPI	RGGWCCY	1 cut(s)	868
RsaI	GTAC	1 cut(s)	627
RsaNI	GTAC	1 cut(s)	626
RseI	CAYNNNNRTG	2 cut(s)	436, 762
SapI	GCTCTTC	2 cut(s)	518, 942
SaqAI	TTAA	1 cut(s)	909
SatI	GCNGC	9 cut(s)	136, 141, 144, 326, 329, 338, 488, 591, 933
Sau3AI	GATC	3 cut(s)	361, 412, 856
Sau96I	GGNCC	2 cut(s)	161, 868
ScrFI	CCNGG	1 cut(s)	301
SduI	GDGCHC	2 cut(s)	378, 530
SetI	ASST	7 cut(s)	78, 258, 305, 467, 577, 793, 937
SfaNI	GCATC	1 cut(s)	628
SinI	GGWCC	1 cut(s)	868
SmiMI	CAYNNNNRTG	2 cut(s)	436, 762
Sse9I	AATT	3 cut(s)	261, 424, 843
SspMI	CTAG	1 cut(s)	953
StyD4I	CCNGG	1 cut(s)	299
StyI	CCWWGG	1 cut(s)	210
TaaI	ACNGT	1 cut(s)	41
TaqI	TCGA	1 cut(s)	741
TaqII	GACCGA	1 cut(s)	917
TasI	AATT	3 cut(s)	261, 424, 843
TatI	WGTACW	1 cut(s)	625
TauI	GCSGC	5 cut(s)	143, 146, 328, 340, 593
TfiI	GAWTC	5 cut(s)	290, 296, 396, 636, 944
Tru1I	TTAA	1 cut(s)	909
Tru9I	TTAA	1 cut(s)	909
TscAI	CASTG	1 cut(s)	562
TseFI	GTSAC	2 cut(s)	62, 553
TseI	GCWGC	4 cut(s)	135, 328, 487, 932
Tsp45I	GTSAC	2 cut(s)	62, 553
TspDTI	ATGAA	3 cut(s)	492, 576, 936
TspRI	CASTG	1 cut(s)	562
VpaK11BI	GGWCC	1 cut(s)	868
XceI	RCATGY	2 cut(s)	619, 753
XmnI	GAANNNNTTC	1 cut(s)	576
XspI	CTAG	1 cut(s)	953
Zsp2I	ATGCAT	1 cut(s)	621

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.