Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0019417.1

Orthogroup ID

OG0005107

Physical Location & Seq

Genomic Coordinates Reverse (-)

1531 .. 3092

Gene Structure 1562 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0019417.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

atggctttctcagtctccacagccacagccagttccagtccccaattccatttcttctcttttcactccaatcaccaattcccagtctccctctctctcccaacccacaccgccagactcctcgtctcctgctgcgccgccgcaaagcctcagaccggccccgtcaagaagaaacgctctccttcctcgccctccaccaccaccaccaccacccccaccaacaacaacaacagcaagaaaaagcgtaacgccaaggataagaataccagctttagcaaggttgaaattgtggatgatttcgggtcttcagattccgggtcgctgggttaccatcctacgccgctgccgaagccgcccgctgggtttgtagtggatgatcacggcagggtgcttatggcttcgtccaagcgaattgcctcgattattgtggtgaaagctgggttttctgatttggttgcgagaacggagaaaaatgaagggaatgagaatgtggggacagagcatatacaaaatcaaactacaaatgtggaatcatatagcaatgaaagtgagtgttctggagcctggacaagagtggaggacaagggtttcttgaagaaagtaatcctttggcagtgtaagagtccatttcgctgggaactcatgctgaatattatattgagtatgctgcctggagggagtgggaaatcagatactgataaggcgtctttgtttttagaacacactgatgagaacaggcttttggaggatagagagccgtttcttgaggcaacaagggattttagtaggaatgcgctggagattaaacatgacaggagagctgaggccctaaactcaagcaagaggactagaaggagaatgattattttttggactgtggtggaccagtggcaggtttgggctggaatgaactggagatcaacaatgttgggaatgctcaggccctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3727

Protein Analysis

315

Amino Acids

35.2

Weight (kDa)

9.51

Isoelectric Point (pI)

46.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005107)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33480
fragaria_vesca	FvH4_1g25120 FvH4_1g25120 FvH4_1g25120 FvH4_1g25120 FvH4_1g25120 FvH4_1g25120 FvH4_1g25120 FvH4_1g25120
malus_domestica	MD00G1064700.v1.1
prunus_persica	Prupe.4G278200_v2.0.a1 Prupe.4G278200_v2.0.a1 Prupe.4G278200_v2.0.a1
pyrus_communis	pycom520g00290
rosa_chinensis	RchiOBHm_Chr2g0122781
rosa_laevigata	RLG00000018711
rosa_multiflora	Rmu_sc0008259.1_g000002 Rmu_sc0019417.1_g000001 Rmu_sc0032021.1_g000001 Rmu_sc0039730.1_g000001
rosa_roxburghii	Rroxscaffold_2G00121230
rosa_rugosa	Rorug02G0242400 Rorug02G0242500.1
rosa_samantha	Rh2AG300400 Rh2BG308500 Rh2CG287300 Rh2DG324600
rosa_wichuraiana	Rw2G023880 Rw2G024090 Rw2G024120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	883
AciI	CCGC	6 cut(s)	111, 138, 141, 341, 353, 357
AcuI	CTGAAG	1 cut(s)	291
AcyI	GRCGYC	1 cut(s)	704
AfiI	CCNNNNNNNGG	3 cut(s)	155, 359, 892
AgsI	TTSAA	2 cut(s)	284, 595
AhdI	GACNNNNNGTC	1 cut(s)	122
AjnI	CCWGG	2 cut(s)	563, 670
AjuI	GAANNNNNNNTTGG	4 cut(s)	62, 94, 725, 757
AluBI	AGCT	3 cut(s)	270, 437, 821
AluI	AGCT	3 cut(s)	270, 437, 821
Alw26I	GTCTC	3 cut(s)	19, 91, 130
AlwNI	CAGNNNCTG	1 cut(s)	695
AoxI	GGCC	3 cut(s)	157, 825, 941
ApeKI	GCWGC	3 cut(s)	132, 343, 667
AspLEI	GCGC	2 cut(s)	137, 796
AspS9I	GGNCC	4 cut(s)	158, 826, 883, 942
AsuC2I	CCSGG	1 cut(s)	316
AsuHPI	GGTGA	2 cut(s)	65, 442
AvaII	GGWCC	1 cut(s)	883
BbsI	GAAGAC	1 cut(s)	297
BbvCI	CCTCAGC	1 cut(s)	822
BbvI	GCAGC	3 cut(s)	119, 330, 654
BccI	CCATC	1 cut(s)	339
BceAI	ACGGC	2 cut(s)	397, 742
BciT130I	CCWGG	2 cut(s)	565, 672
BclI	TGATCA	1 cut(s)	376
BcnI	CCSGG	1 cut(s)	316
BcoDI	GTCTC	3 cut(s)	19, 91, 130
BfaI	CTAG	1 cut(s)	849
BfuAI	ACCTGC	1 cut(s)	883
BisI	GCNGC	7 cut(s)	133, 138, 141, 341, 344, 353, 668
BlsI	GCNGC	7 cut(s)	134, 139, 142, 342, 345, 354, 669
Bme1390I	CCNGG	3 cut(s)	316, 565, 672
Bme18I	GGWCC	1 cut(s)	883
BmeRI	GACNNNNNGTC	1 cut(s)	122
BmgT120I	GGNCC	4 cut(s)	158, 826, 883, 942
BmiI	GGNNCC	2 cut(s)	160, 562
BmrFI	CCNGG	3 cut(s)	316, 565, 672
BmrI	ACTGGG	1 cut(s)	77
BmuI	ACTGGG	1 cut(s)	77
BpiI	GAAGAC	1 cut(s)	297
BpmI	CTGGAG	4 cut(s)	579, 693, 818, 934
Bpu10I	CCTNAGC	2 cut(s)	822, 938
BpuEI	CTTGAG	2 cut(s)	785, 820
BpuMI	CCSGG	1 cut(s)	316
BsaHI	GRCGYC	1 cut(s)	704
BsaJI	CCNNGG	1 cut(s)	252
Bsc4I	CCNNNNNNNGG	3 cut(s)	155, 359, 892
Bse118I	RCCGGY	1 cut(s)	155
Bse1I	ACTGG	5 cut(s)	30, 36, 83, 886, 917
Bse3DI	GCAATG	1 cut(s)	547
BseBI	CCWGG	2 cut(s)	565, 672
BseDI	CCNNGG	1 cut(s)	252
BseGI	GGATG	3 cut(s)	298, 331, 379
BseLI	CCNNNNNNNGG	3 cut(s)	155, 359, 892
BseMI	GCAATG	1 cut(s)	547
BseMII	CTCAG	3 cut(s)	24, 164, 813
BseNI	ACTGG	5 cut(s)	30, 36, 83, 886, 917
BseRI	GAGGAG	1 cut(s)	110
BseXI	GCAGC	3 cut(s)	119, 330, 654
BseYI	CCCAGC	4 cut(s)	322, 359, 437, 633
BshFI	GGCC	3 cut(s)	159, 827, 943
BsiSI	CCGG	2 cut(s)	156, 315
BslFI	GGGAC	2 cut(s)	24, 508
BslI	CCNNNNNNNGG	3 cut(s)	155, 359, 892
BsmAI	GTCTC	3 cut(s)	19, 91, 130
BsmBI	CGTCTC	1 cut(s)	130
BsmFI	GGGAC	2 cut(s)	24, 508
BsmI	GAATGC	2 cut(s)	796, 939
BsnI	GGCC	3 cut(s)	159, 827, 943
Bsp143I	GATC	2 cut(s)	376, 917
BspACI	CCGC	6 cut(s)	111, 138, 141, 341, 353, 357
BspANI	GGCC	3 cut(s)	159, 827, 943
BspCNI	CTCAG	3 cut(s)	23, 163, 814
BspLI	GGNNCC	2 cut(s)	160, 562
BspMI	ACCTGC	1 cut(s)	883
BsrDI	GCAATG	1 cut(s)	547
BsrFI	RCCGGY	1 cut(s)	155
BsrI	ACTGG	5 cut(s)	30, 36, 83, 886, 917
BssAI	RCCGGY	1 cut(s)	155
BssECI	CCNNGG	1 cut(s)	252
BssMI	GATC	2 cut(s)	376, 917
BssNI	GRCGYC	1 cut(s)	704
BssT1I	CCWWGG	1 cut(s)	252
Bst2UI	CCWGG	2 cut(s)	565, 672
Bst4CI	ACNGT	1 cut(s)	877
BstACI	GRCGYC	1 cut(s)	704
BstC8I	GCNNGC	1 cut(s)	357
BstDEI	CTNAG	4 cut(s)	10, 150, 822, 938
BstEII	GGTNACC	1 cut(s)	326
BstF5I	GGATG	3 cut(s)	298, 331, 379
BstHHI	GCGC	2 cut(s)	137, 796
BstKTI	GATC	2 cut(s)	379, 920
BstMAI	GTCTC	3 cut(s)	19, 91, 130
BstMBI	GATC	2 cut(s)	376, 917
BstMWI	GCNNNNNNNGC	2 cut(s)	349, 352
BstNI	CCWGG	2 cut(s)	565, 672
BstPI	GGTNACC	1 cut(s)	326
BstSCI	CCNGG	3 cut(s)	314, 563, 670
BstV1I	GCAGC	3 cut(s)	119, 330, 654
BstV2I	GAAGAC	1 cut(s)	297
BstXI	CCANNNNNNTGG	1 cut(s)	633
BsuRI	GGCC	3 cut(s)	159, 827, 943
BtsCI	GGATG	3 cut(s)	298, 331, 379
BtsI	GCAGTG	1 cut(s)	620
BtsIMutI	CAGTG	3 cut(s)	620, 723, 893
BveI	ACCTGC	1 cut(s)	883
Cac8I	GCNNGC	1 cut(s)	357
CaiI	CAGNNNCTG	1 cut(s)	695
CfoI	GCGC	2 cut(s)	137, 796
Cfr10I	RCCGGY	1 cut(s)	155
Cfr13I	GGNCC	4 cut(s)	158, 826, 883, 942
CseI	GACGC	1 cut(s)	693
CviAII	CATG	2 cut(s)	643, 809
DdeI	CTNAG	4 cut(s)	10, 150, 822, 938
DpnI	GATC	2 cut(s)	378, 919
DpnII	GATC	2 cut(s)	376, 917
DriI	GACNNNNNGTC	1 cut(s)	122
Eam1105I	GACNNNNNGTC	1 cut(s)	122
Eco130I	CCWWGG	1 cut(s)	252
Eco47I	GGWCC	1 cut(s)	883
Eco57I	CTGAAG	1 cut(s)	291
Eco91I	GGTNACC	1 cut(s)	326
EcoO109I	RGGNCCY	2 cut(s)	826, 942
EcoO65I	GGTNACC	1 cut(s)	326
EcoRII	CCWGG	2 cut(s)	563, 670
EcoT14I	CCWWGG	1 cut(s)	252
ErhI	CCWWGG	1 cut(s)	252
Esp3I	CGTCTC	1 cut(s)	130
FaeI	CATG	2 cut(s)	646, 812
FaiI	YATR	9 cut(s)	395, 504, 506, 535, 537, 644, 656, 665, 810
FalI	AAGNNNNNCTT	4 cut(s)	575, 607, 591, 623
FaqI	GGGAC	2 cut(s)	24, 508
FatI	CATG	2 cut(s)	642, 808
FauI	CCCGC	1 cut(s)	364
FbaI	TGATCA	1 cut(s)	376
Fnu4HI	GCNGC	7 cut(s)	133, 138, 141, 341, 344, 353, 668
FokI	GGATG	3 cut(s)	305, 318, 386
Fsp4HI	GCNGC	7 cut(s)	133, 138, 141, 341, 344, 353, 668
FspBI	CTAG	1 cut(s)	849
GlaI	GCGC	2 cut(s)	136, 795
GluI	GCNGC	7 cut(s)	133, 138, 141, 341, 344, 353, 668
GsaI	CCCAGC	4 cut(s)	326, 363, 441, 637
GsuI	CTGGAG	4 cut(s)	579, 693, 818, 934
HaeIII	GGCC	3 cut(s)	159, 827, 943
HapII	CCGG	2 cut(s)	156, 315
HgaI	GACGC	1 cut(s)	693
HhaI	GCGC	2 cut(s)	137, 796
Hin1I	GRCGYC	1 cut(s)	704
Hin1II	CATG	2 cut(s)	646, 812
Hin6I	GCGC	2 cut(s)	135, 794
HinP1I	GCGC	2 cut(s)	135, 794
HinfI	GANTC	4 cut(s)	117, 311, 530, 622
HpaII	CCGG	2 cut(s)	156, 315
HphI	GGTGA	2 cut(s)	65, 442
Hpy166II	GTNNAC	1 cut(s)	883
Hpy188I	TCNGA	4 cut(s)	153, 310, 448, 691
Hpy188III	TCNNGA	4 cut(s)	166, 558, 592, 764
Hpy8I	GTNNAC	1 cut(s)	883
HpyAV	CCTTC	3 cut(s)	192, 470, 846
HpyCH4III	ACNGT	1 cut(s)	877
HpyF10VI	GCNNNNNNNGC	2 cut(s)	349, 352
HpyF3I	CTNAG	4 cut(s)	10, 150, 822, 938
Hsp92I	GRCGYC	1 cut(s)	704
Hsp92II	CATG	2 cut(s)	646, 812
HspAI	GCGC	2 cut(s)	135, 794
Ksp22I	TGATCA	1 cut(s)	376
Kzo9I	GATC	2 cut(s)	376, 917
LmnI	GCTCC	1 cut(s)	560
Lsp1109I	GCAGC	3 cut(s)	119, 330, 654
MaeI	CTAG	1 cut(s)	849
MaeIII	GTNAC	2 cut(s)	245, 326
MalI	GATC	2 cut(s)	378, 919
MboI	GATC	2 cut(s)	376, 917
MboII	GAAGA	4 cut(s)	46, 181, 297, 607
MluCI	AATT	4 cut(s)	44, 77, 285, 411
MlyI	GAGTC	2 cut(s)	111, 631
MseI	TTAA	1 cut(s)	804
MslI	CAYNNNNRTG	1 cut(s)	726
MspA1I	CMGCKG	2 cut(s)	343, 359
MspI	CCGG	2 cut(s)	156, 315
MspR9I	CCNGG	3 cut(s)	316, 565, 672
Mva1269I	GAATGC	2 cut(s)	796, 939
MvaI	CCWGG	2 cut(s)	565, 672
MwoI	GCNNNNNNNGC	2 cut(s)	349, 352
NciI	CCSGG	1 cut(s)	316
NdeII	GATC	2 cut(s)	376, 917
NlaIII	CATG	2 cut(s)	646, 812
NlaIV	GGNNCC	2 cut(s)	160, 562
PcsI	WCGNNNNNNNCGW	1 cut(s)	344
PctI	GAATGC	2 cut(s)	796, 939
PfeI	GAWTC	2 cut(s)	311, 530
PkrI	GCNGC	7 cut(s)	134, 139, 142, 342, 345, 354, 669
PleI	GAGTC	2 cut(s)	111, 630
PpsI	GAGTC	2 cut(s)	111, 630
Psp6I	CCWGG	2 cut(s)	563, 670
PspEI	GGTNACC	1 cut(s)	326
PspFI	CCCAGC	4 cut(s)	322, 359, 437, 633
PspGI	CCWGG	2 cut(s)	563, 670
PspN4I	GGNNCC	2 cut(s)	160, 562
PspPI	GGNCC	4 cut(s)	158, 826, 883, 942
PstNI	CAGNNNCTG	1 cut(s)	695
RseI	CAYNNNNRTG	1 cut(s)	726
SaqAI	TTAA	1 cut(s)	804
SatI	GCNGC	7 cut(s)	133, 138, 141, 341, 344, 353, 668
Sau3AI	GATC	2 cut(s)	376, 917
Sau96I	GGNCC	4 cut(s)	158, 826, 883, 942
SchI	GAGTC	2 cut(s)	111, 631
ScrFI	CCNGG	3 cut(s)	316, 565, 672
SetI	ASST	5 cut(s)	272, 282, 439, 823, 897
SinI	GGWCC	1 cut(s)	883
SmiMI	CAYNNNNRTG	1 cut(s)	726
SmlI	CTYRAG	2 cut(s)	764, 835
SmoI	CTYRAG	2 cut(s)	764, 835
Sse9I	AATT	4 cut(s)	44, 77, 285, 411
SsiI	CCGC	6 cut(s)	111, 138, 141, 341, 353, 357
SspI	AATATT	1 cut(s)	652
SspMI	CTAG	1 cut(s)	849
StyD4I	CCNGG	3 cut(s)	314, 563, 670
StyI	CCWWGG	1 cut(s)	252
TaaI	ACNGT	1 cut(s)	877
TaqI	TCGA	1 cut(s)	419
TasI	AATT	4 cut(s)	44, 77, 285, 411
TauI	GCSGC	4 cut(s)	140, 143, 343, 355
TfiI	GAWTC	2 cut(s)	311, 530
Tru1I	TTAA	1 cut(s)	804
Tru9I	TTAA	1 cut(s)	804
TscAI	CASTG	3 cut(s)	620, 730, 893
TseI	GCWGC	3 cut(s)	132, 343, 667
TspDTI	ATGAA	3 cut(s)	489, 558, 923
TspGWI	ACGGA	1 cut(s)	479
TspRI	CASTG	3 cut(s)	620, 730, 893
VpaK11BI	GGWCC	1 cut(s)	883
XspI	CTAG	1 cut(s)	849

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.