Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0005107

Physical Location & Seq

Genomic Coordinates Reverse (-)

35896146 .. 35912293

Gene Structure 16148 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG308500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1710 bp

ATGGCTTTCTCAGTCTCCACAGCCACAGCCAGTTCCAGTCCCCAATTCCATTTCTTCTCTTTTCACTCCAATCACCAATTCCCAGTCTCCCTCTCTCTCCCAACCCACACCGCCAGACTCCTCGTCTCCTGCTGCGCCGCCGCAAAGCCTCAGACCGGCCCCGTCAAGAAGAAACGCTCTCCTTCCTCGCCCTCCACCACCACCACCACCACCCCCACCAACAACAACAACAGCAAGAAAAAGCGTAAGGCCAAGGATAATAATACCAGCTTTAGCAAGGTTGAAATTGTGGATGATTTCGGGTCTTCAGATTCCGGGTCGCTGGGTTACCATCCTACGCCGCTGCCGAAGCCGCCCGCTGGGTTTGTAGTGGATGATCACGGCAGGGTTCTTATGGCTTCGTCCAAGCGAATTGCCTCGATTGTTGATCCTACCAATAATTTCCCATTAGAGTGCGTTATAAGGAGAGTGTTCAGAAGCTCACGAGGGGATGAATGTATGCTGCTTTGCCCTGTTGACACGCCTGTTCAGATATTAAAGAGCACCAATATAGATGGTTGGTCAGCGGTCAGTGATGAAGAAGTTGAAGCTATTCTTCCTTCTGCTGCTTATGCCCTTGCCAAGATACATATGCATCTTGTACATAGCGGATTTTGCTATACAGCAAGGGGAGGATTTTGTTACTCAGAAGATGACATATTTGATTTTCGCACAGATGATGGTGAAGATGTAGATGGCTTGCCAACCGAGGGTGTTGAGATTACATGTTTCCATTTGGATGGTGCGCATTATATGGTTTACACACCCTCTGATCCACTTCTCTTTGTTGCTGTAAAGGATGATGACGGTCTATTGCAAATTGCTGATGATGATCTGCTGGAGGACCCTGCCATCATTAGCGCCATAGATGAGGAGACCGAGTTTAACGCATTGGTGAGAGTAAATATTCGGAACAAAATCGAGGAGGAAGAGAAGGAAAAGCTTCAGAAGCTTCAACAGGAAGAGGAGGAATTTCAGTTACAGAAGCGTAAGAAGAGGAAGGTCAAGGGGATTAATCGATTGTCCTTTGCAGATGACATTGAGGATGGAAGTGAAGAGGAAGATGGAGAAAATAAAAGTACAGAGACTAAAAGATTATGGTCTGGTAGATTTGGCAAAGATCCTACTGTGGAAACTAGTTTTCTCCCAGATAGTGAGCGGGAGGCAGAGGAACAAGCTGAGCGTGAAAGGTTGCGAAAACAGTGGTTTCTTGAGCAGGAGAAGATACGAAATGAGCCGCTTCAAATTACTTACAGTTACTGGGATGGAGCAGGGCATAGGCGGACTATCCAGGTACGAAAGGGGGATAAAATAGGAGATTTTCTTCGCTCTGTTCAACAGCAACTAGCACCTGAGTTTCGAGAAGTTCGAACTACCTCAGTGGAGAATTTGCTATATGTAAAAGAAGATCTTATCATTCCGCATCAGCACAGTTTCTATGAGCTAATTGTAAACAAGGCAAGGGGCAAAAGTGGACCGCTTTTTCATTTTGATGTGCATGAGGATGTGCGAACAATTGCTGATGCTACAATAGAGAAGGATGAGTCTCATGCTGGGAAGGTCGTTGAGAGGCATTGGTATGACAAGAATAAGCATATTTTCCCTGCTTCTAGATGGGAGATATATGATCCGACGAAGAAATGGGAGCGTTACACCATCCATGGGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009639 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009892 GO:0009987 GO:0010033 GO:0010099 GO:0010114 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016441 GO:0016458 GO:0019222 GO:0023052 GO:0031047 GO:0031050 GO:0032870 GO:0034641 GO:0035194 GO:0035195 GO:0035196 GO:0035556 GO:0040029 GO:0042221 GO:0042752 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048519 GO:0048580 GO:0048583 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071369 GO:0071407 GO:0071495 GO:0071704 GO:0090304 GO:1901360 GO:1901698 GO:1901699 GO:2000026 GO:2000030

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

XAP5

Protein Analysis

569

Amino Acids

64.6

Weight (kDa)

5.49

Isoelectric Point (pI)

57.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF3727	PF12527	210 - 304	3.8e-20	Protein of unknown function (DUF3727)
XAP5	PF04921	426 - 565	3.2e-52	XAP5, circadian clock regulator C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005107)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33480
fragaria_vesca	FvH4_1g25120 FvH4_1g25120 FvH4_1g25120 FvH4_1g25120 FvH4_1g25120 FvH4_1g25120 FvH4_1g25120 FvH4_1g25120
malus_domestica	MD00G1064700.v1.1
prunus_persica	Prupe.4G278200_v2.0.a1 Prupe.4G278200_v2.0.a1 Prupe.4G278200_v2.0.a1
pyrus_communis	pycom520g00290
rosa_chinensis	RchiOBHm_Chr2g0122781
rosa_laevigata	RLG00000018711
rosa_multiflora	Rmu_sc0008259.1_g000002 Rmu_sc0019417.1_g000001 Rmu_sc0032021.1_g000001 Rmu_sc0039730.1_g000001
rosa_roxburghii	Rroxscaffold_2G00121230
rosa_rugosa	Rorug02G0242400 Rorug02G0242500.1
rosa_samantha	Rh2AG300400 Rh2BG308500 Rh2CG287300 Rh2DG324600
rosa_wichuraiana	Rw2G023880 Rw2G024090 Rw2G024120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	461
Acc16I	TGCGCA	1 cut(s)	786
AccBSI	CCGCTC	1 cut(s)	1198
AclWI	GGATC	4 cut(s)	422, 806, 1154, 1661
AcsI	RAATTY	2 cut(s)	1010, 1426
AcuI	CTGAAG	2 cut(s)	291, 968
AfaI	GTAC	3 cut(s)	642, 1120, 1335
AfiI	CCNNNNNNNGG	4 cut(s)	155, 359, 749, 1701
AflIII	ACRYGT	1 cut(s)	764
AgsI	TTSAA	5 cut(s)	284, 587, 995, 1283, 1376
AhdI	GACNNNNNGTC	1 cut(s)	122
AhlI	ACTAGT	1 cut(s)	1175
AjnI	CCWGG	1 cut(s)	1329
AjuI	GAANNNNNNNTTGG	2 cut(s)	62, 94
AluBI	AGCT	7 cut(s)	270, 480, 590, 982, 991, 1217, 1483
AluI	AGCT	7 cut(s)	270, 480, 590, 982, 991, 1217, 1483
Alw21I	GWGCWC	1 cut(s)	545
Alw26I	GTCTC	6 cut(s)	19, 91, 130, 908, 1118, 1590
AlwI	GGATC	4 cut(s)	422, 806, 1154, 1661
AlwNI	CAGNNNCTG	1 cut(s)	1299
AoxI	GGCC	2 cut(s)	157, 249
ApeKI	GCWGC	4 cut(s)	132, 343, 502, 605
ApoI	RAATTY	2 cut(s)	1010, 1426
AseI	ATTAAT	1 cut(s)	1053
Asp700I	GAANNNNTTC	2 cut(s)	591, 981
AspLEI	GCGC	3 cut(s)	137, 787, 902
AspS9I	GGNCC	3 cut(s)	158, 883, 1514
AsuC2I	CCSGG	1 cut(s)	316
AsuHPI	GGTGA	3 cut(s)	65, 734, 946
AsuII	TTCGAA	1 cut(s)	1408
AvaII	GGWCC	2 cut(s)	883, 1514
BauI	CACGAG	1 cut(s)	483
BbsI	GAAGAC	1 cut(s)	297
Bbv12I	GWGCWC	1 cut(s)	545
BbvI	GCAGC	4 cut(s)	119, 330, 489, 592
BceAI	ACGGC	1 cut(s)	397
BciT130I	CCWGG	1 cut(s)	1331
BclI	TGATCA	1 cut(s)	376
BcnI	CCSGG	1 cut(s)	316
BcoDI	GTCTC	6 cut(s)	19, 91, 130, 908, 1118, 1590
BcuI	ACTAGT	1 cut(s)	1175
BfaI	CTAG	3 cut(s)	1176, 1385, 1650
BfoI	RGCGCY	1 cut(s)	903
BglII	AGATCT	1 cut(s)	1447
BisI	GCNGC	9 cut(s)	133, 138, 141, 341, 344, 353, 503, 606, 1277
BlpI	GCTNAGC	1 cut(s)	1218
BlsI	GCNGC	9 cut(s)	134, 139, 142, 342, 345, 354, 504, 607, 1278
Bme1390I	CCNGG	2 cut(s)	316, 1331
Bme18I	GGWCC	2 cut(s)	883, 1514
BmeRI	GACNNNNNGTC	1 cut(s)	122
BmgT120I	GGNCC	3 cut(s)	158, 883, 1514
BmiI	GGNNCC	2 cut(s)	160, 885
BmrFI	CCNGG	2 cut(s)	316, 1331
BmrI	ACTGGG	2 cut(s)	77, 1309
BmsI	GCATC	3 cut(s)	643, 1471, 1552
BmuI	ACTGGG	2 cut(s)	77, 1309
BpiI	GAAGAC	1 cut(s)	297
BpmI	CTGGAG	1 cut(s)	899
Bpu1102I	GCTNAGC	1 cut(s)	1218
Bpu14I	TTCGAA	1 cut(s)	1408
BpuEI	CTTGAG	1 cut(s)	1271
BpuMI	CCSGG	1 cut(s)	316
Bsa29I	ATCGAT	1 cut(s)	1057
BsaBI	GATNNNNATC	1 cut(s)	870
BsaI	GGTCTC	1 cut(s)	908
BsaJI	CCNNGG	3 cut(s)	252, 747, 1699
BsaXI	ACNNNNNCTCC	2 cut(s)	905, 935
Bsc4I	CCNNNNNNNGG	4 cut(s)	155, 359, 749, 1701
Bse118I	RCCGGY	1 cut(s)	155
Bse1I	ACTGG	4 cut(s)	30, 36, 83, 1304
Bse8I	GATNNNNATC	1 cut(s)	870
BseBI	CCWGG	1 cut(s)	1331
BseCI	ATCGAT	1 cut(s)	1057
BseDI	CCNNGG	3 cut(s)	252, 747, 1699
BseJI	GATNNNNATC	1 cut(s)	870
BseLI	CCNNNNNNNGG	4 cut(s)	155, 359, 749, 1701
BseMII	CTCAG	6 cut(s)	24, 164, 699, 1209, 1383, 1431
BseNI	ACTGG	4 cut(s)	30, 36, 83, 1304
BseRI	GAGGAG	4 cut(s)	110, 926, 977, 1019
BseXI	GCAGC	4 cut(s)	119, 330, 489, 592
BseYI	CCCAGC	3 cut(s)	322, 359, 1592
BshFI	GGCC	2 cut(s)	159, 251
BshVI	ATCGAT	1 cut(s)	1057
BsiHKAI	GWGCWC	1 cut(s)	545
BsiSI	CCGG	2 cut(s)	156, 315
BslFI	GGGAC	1 cut(s)	24
BslI	CCNNNNNNNGG	4 cut(s)	155, 359, 749, 1701
BsmAI	GTCTC	6 cut(s)	19, 91, 130, 908, 1118, 1590
BsmBI	CGTCTC	1 cut(s)	130
BsmFI	GGGAC	1 cut(s)	24
BsnI	GGCC	2 cut(s)	159, 251
Bso31I	GGTCTC	1 cut(s)	908
Bsp119I	TTCGAA	1 cut(s)	1408
Bsp1286I	GDGCHC	1 cut(s)	545
Bsp1407I	TGTACA	1 cut(s)	640
Bsp143I	GATC	7 cut(s)	376, 427, 811, 871, 1159, 1447, 1666
Bsp1720I	GCTNAGC	1 cut(s)	1218
Bsp19I	CCATGG	1 cut(s)	1699
BspANI	GGCC	2 cut(s)	159, 251
BspCNI	CTCAG	6 cut(s)	23, 163, 698, 1210, 1384, 1430
BspDI	ATCGAT	1 cut(s)	1057
BspLI	GGNNCC	2 cut(s)	160, 885
BspPI	GGATC	4 cut(s)	422, 806, 1154, 1661
BspT104I	TTCGAA	1 cut(s)	1408
BspTNI	GGTCTC	1 cut(s)	908
BsrBI	CCGCTC	1 cut(s)	1198
BsrFI	RCCGGY	1 cut(s)	155
BsrGI	TGTACA	1 cut(s)	640
BsrI	ACTGG	4 cut(s)	30, 36, 83, 1304
BssAI	RCCGGY	1 cut(s)	155
BssECI	CCNNGG	3 cut(s)	252, 747, 1699
BssMI	GATC	7 cut(s)	376, 427, 811, 871, 1159, 1447, 1666
BssSI	CACGAG	1 cut(s)	483
BssT1I	CCWWGG	2 cut(s)	252, 1699
Bst2BI	CACGAG	1 cut(s)	483
Bst2UI	CCWGG	1 cut(s)	1331
Bst4CI	ACNGT	5 cut(s)	848, 1168, 1242, 1295, 1472
Bst6I	CTCTTC	4 cut(s)	963, 996, 1028, 1089
BstAUI	TGTACA	1 cut(s)	640
BstBI	TTCGAA	1 cut(s)	1408
BstC8I	GCNNGC	2 cut(s)	357, 740
BstDEI	CTNAG	6 cut(s)	10, 150, 685, 1218, 1392, 1417
BstDSI	CCRYGG	1 cut(s)	1699
BstEII	GGTNACC	1 cut(s)	326
BstH2I	RGCGCY	1 cut(s)	903
BstHHI	GCGC	3 cut(s)	137, 787, 902
BstKTI	GATC	7 cut(s)	379, 430, 814, 874, 1162, 1450, 1669
BstMAI	GTCTC	6 cut(s)	19, 91, 130, 908, 1118, 1590
BstMBI	GATC	7 cut(s)	376, 427, 811, 871, 1159, 1447, 1666
BstMWI	GCNNNNNNNGC	5 cut(s)	349, 352, 611, 654, 988
BstNI	CCWGG	1 cut(s)	1331
BstNSI	RCATGY	1 cut(s)	768
BstPI	GGTNACC	1 cut(s)	326
BstSCI	CCNGG	2 cut(s)	314, 1329
BstV1I	GCAGC	4 cut(s)	119, 330, 489, 592
BstV2I	GAAGAC	1 cut(s)	297
BstX2I	RGATCY	2 cut(s)	1159, 1447
BstXI	CCANNNNNNTGG	1 cut(s)	779
BstYI	RGATCY	2 cut(s)	1159, 1447
Bsu15I	ATCGAT	1 cut(s)	1057
BsuRI	GGCC	2 cut(s)	159, 251
BsuTUI	ATCGAT	1 cut(s)	1057
BtgI	CCRYGG	1 cut(s)	1699
BtsIMutI	CAGTG	3 cut(s)	577, 1247, 1425
Cac8I	GCNNGC	2 cut(s)	357, 740
CaiI	CAGNNNCTG	1 cut(s)	1299
CfoI	GCGC	3 cut(s)	137, 787, 902
Cfr10I	RCCGGY	1 cut(s)	155
Cfr13I	GGNCC	3 cut(s)	158, 883, 1514
ClaI	ATCGAT	1 cut(s)	1057
Csp6I	GTAC	3 cut(s)	641, 1119, 1334
CviAII	CATG	4 cut(s)	765, 1538, 1589, 1700
CviQI	GTAC	3 cut(s)	641, 1119, 1334
DdeI	CTNAG	6 cut(s)	10, 150, 685, 1218, 1392, 1417
DpnI	GATC	7 cut(s)	378, 429, 813, 873, 1161, 1449, 1668
DpnII	GATC	7 cut(s)	376, 427, 811, 871, 1159, 1447, 1666
DriI	GACNNNNNGTC	1 cut(s)	122
Eam1104I	CTCTTC	4 cut(s)	963, 996, 1028, 1089
Eam1105I	GACNNNNNGTC	1 cut(s)	122
EarI	CTCTTC	4 cut(s)	963, 996, 1028, 1089
EciI	GGCGGA	1 cut(s)	1336
Eco130I	CCWWGG	2 cut(s)	252, 1699
Eco31I	GGTCTC	1 cut(s)	908
Eco47I	GGWCC	2 cut(s)	883, 1514
Eco57I	CTGAAG	2 cut(s)	291, 968
Eco91I	GGTNACC	1 cut(s)	326
EcoO109I	RGGNCCY	1 cut(s)	883
EcoO65I	GGTNACC	1 cut(s)	326
EcoRII	CCWGG	1 cut(s)	1329
EcoT14I	CCWWGG	2 cut(s)	252, 1699
EcoT22I	ATGCAT	1 cut(s)	636
ErhI	CCWWGG	2 cut(s)	252, 1699
Esp3I	CGTCTC	1 cut(s)	130
FaeI	CATG	4 cut(s)	768, 1541, 1592, 1703
FalI	AAGNNNNNCTT	4 cut(s)	579, 611, 1434, 1466
FaqI	GGGAC	1 cut(s)	24
FatI	CATG	4 cut(s)	764, 1537, 1588, 1699
FauI	CCCGC	2 cut(s)	364, 1191
FauNDI	CATATG	1 cut(s)	630
FbaI	TGATCA	1 cut(s)	376
Fnu4HI	GCNGC	9 cut(s)	133, 138, 141, 341, 344, 353, 503, 606, 1277
Fsp4HI	GCNGC	9 cut(s)	133, 138, 141, 341, 344, 353, 503, 606, 1277
FspAI	RTGCGCAY	1 cut(s)	786
FspBI	CTAG	3 cut(s)	1176, 1385, 1650
FspI	TGCGCA	1 cut(s)	786
GlaI	GCGC	3 cut(s)	136, 786, 901
GluI	GCNGC	9 cut(s)	133, 138, 141, 341, 344, 353, 503, 606, 1277
GsaI	CCCAGC	3 cut(s)	326, 363, 1596
GsuI	CTGGAG	1 cut(s)	899
HaeII	RGCGCY	1 cut(s)	903
HaeIII	GGCC	2 cut(s)	159, 251
HapII	CCGG	2 cut(s)	156, 315
HhaI	GCGC	3 cut(s)	137, 787, 902
Hin1II	CATG	4 cut(s)	768, 1541, 1592, 1703
Hin6I	GCGC	3 cut(s)	135, 785, 900
HinP1I	GCGC	3 cut(s)	135, 785, 900
HincII	GTYRAC	1 cut(s)	517
HindII	GTYRAC	1 cut(s)	517
HindIII	AAGCTT	2 cut(s)	980, 989
HinfI	GANTC	3 cut(s)	117, 311, 1583
HpaII	CCGG	2 cut(s)	156, 315
HphI	GGTGA	3 cut(s)	65, 734, 946
Hpy166II	GTNNAC	4 cut(s)	517, 799, 1492, 1514
Hpy188I	TCNGA	9 cut(s)	153, 310, 476, 531, 688, 811, 951, 987, 1671
Hpy188III	TCNNGA	5 cut(s)	166, 483, 1250, 1400, 1650
Hpy8I	GTNNAC	4 cut(s)	517, 799, 1492, 1514
Hpy99I	CGWCG	1 cut(s)	1675
HpyAV	CCTTC	6 cut(s)	192, 609, 967, 1033, 1570, 1591
HpyCH4III	ACNGT	5 cut(s)	848, 1168, 1242, 1295, 1472
HpyCH4V	TGCA	4 cut(s)	634, 856, 1070, 1537
HpyF10VI	GCNNNNNNNGC	5 cut(s)	349, 352, 611, 654, 988
HpyF3I	CTNAG	6 cut(s)	10, 150, 685, 1218, 1392, 1417
Hsp92II	CATG	4 cut(s)	768, 1541, 1592, 1703
HspAI	GCGC	3 cut(s)	135, 785, 900
Ksp22I	TGATCA	1 cut(s)	376
Kzo9I	GATC	7 cut(s)	376, 427, 811, 871, 1159, 1447, 1666
LmnI	GCTCC	2 cut(s)	1307, 1684
Lsp1109I	GCAGC	4 cut(s)	119, 330, 489, 592
LweI	GCATC	3 cut(s)	643, 1471, 1552
MaeI	CTAG	3 cut(s)	1176, 1385, 1650
MaeIII	GTNAC	5 cut(s)	326, 680, 1017, 1295, 1688
MalI	GATC	7 cut(s)	378, 429, 813, 873, 1161, 1449, 1668
MbiI	CCGCTC	1 cut(s)	1198
MboI	GATC	7 cut(s)	376, 427, 811, 871, 1159, 1447, 1666
MfeI	CAATTG	1 cut(s)	1554
MflI	RGATCY	2 cut(s)	1159, 1447
MhlI	GDGCHC	1 cut(s)	545
MlyI	GAGTC	2 cut(s)	111, 1592
MmeI	TCCRAC	1 cut(s)	1694
Mph1103I	ATGCAT	1 cut(s)	636
MroXI	GAANNNNTTC	2 cut(s)	591, 981
MseI	TTAA	3 cut(s)	536, 924, 1053
MslI	CAYNNNNRTG	5 cut(s)	451, 777, 1530, 1542, 1617
MspA1I	CMGCKG	3 cut(s)	343, 359, 566
MspI	CCGG	2 cut(s)	156, 315
MspR9I	CCNGG	2 cut(s)	316, 1331
MunI	CAATTG	1 cut(s)	1554
MvaI	CCWGG	1 cut(s)	1331
MwoI	GCNNNNNNNGC	5 cut(s)	349, 352, 611, 654, 988
NciI	CCSGG	1 cut(s)	316
NcoI	CCATGG	1 cut(s)	1699
NdeI	CATATG	1 cut(s)	630
NdeII	GATC	7 cut(s)	376, 427, 811, 871, 1159, 1447, 1666
NlaIII	CATG	4 cut(s)	768, 1541, 1592, 1703
NlaIV	GGNNCC	2 cut(s)	160, 885
NsbI	TGCGCA	1 cut(s)	786
NsiI	ATGCAT	1 cut(s)	636
NspI	RCATGY	1 cut(s)	768
NspV	TTCGAA	1 cut(s)	1408
PciI	ACATGT	1 cut(s)	764
PcsI	WCGNNNNNNNCGW	2 cut(s)	344, 1405
PdmI	GAANNNNTTC	2 cut(s)	591, 981
PfeI	GAWTC	1 cut(s)	311
PkrI	GCNGC	9 cut(s)	134, 139, 142, 342, 345, 354, 504, 607, 1278
PleI	GAGTC	2 cut(s)	111, 1591
PpsI	GAGTC	2 cut(s)	111, 1591
PpuMI	RGGWCCY	1 cut(s)	883
PscI	ACATGT	1 cut(s)	764
PshBI	ATTAAT	1 cut(s)	1053
PsiI	TTATAA	1 cut(s)	461
Psp5II	RGGWCCY	1 cut(s)	883
Psp6I	CCWGG	1 cut(s)	1329
PspEI	GGTNACC	1 cut(s)	326
PspFI	CCCAGC	3 cut(s)	322, 359, 1592
PspGI	CCWGG	1 cut(s)	1329
PspN4I	GGNNCC	2 cut(s)	160, 885
PspPI	GGNCC	3 cut(s)	158, 883, 1514
PspPPI	RGGWCCY	1 cut(s)	883
PstNI	CAGNNNCTG	1 cut(s)	1299
PsuI	RGATCY	2 cut(s)	1159, 1447
RsaI	GTAC	3 cut(s)	642, 1120, 1335
RsaNI	GTAC	3 cut(s)	641, 1119, 1334
RseI	CAYNNNNRTG	5 cut(s)	451, 777, 1530, 1542, 1617
SaqAI	TTAA	3 cut(s)	536, 924, 1053
SatI	GCNGC	9 cut(s)	133, 138, 141, 341, 344, 353, 503, 606, 1277
Sau3AI	GATC	7 cut(s)	376, 427, 811, 871, 1159, 1447, 1666
Sau96I	GGNCC	3 cut(s)	158, 883, 1514
SchI	GAGTC	2 cut(s)	111, 1592
ScrFI	CCNGG	2 cut(s)	316, 1331
SduI	GDGCHC	1 cut(s)	545
SfaNI	GCATC	3 cut(s)	643, 1471, 1552
SfuI	TTCGAA	1 cut(s)	1408
SinI	GGWCC	2 cut(s)	883, 1514
SmiMI	CAYNNNNRTG	5 cut(s)	451, 777, 1530, 1542, 1617
SmlI	CTYRAG	1 cut(s)	1250
SmoI	CTYRAG	1 cut(s)	1250
SpeI	ACTAGT	1 cut(s)	1175
SspI	AATATT	1 cut(s)	946
SspMI	CTAG	3 cut(s)	1176, 1385, 1650
StyD4I	CCNGG	2 cut(s)	314, 1329
StyI	CCWWGG	2 cut(s)	252, 1699
TaaI	ACNGT	5 cut(s)	848, 1168, 1242, 1295, 1472
TaqI	TCGA	5 cut(s)	419, 960, 1057, 1399, 1408
TaqII	GACCGA	1 cut(s)	932
TatI	WGTACW	2 cut(s)	640, 1118
TauI	GCSGC	5 cut(s)	140, 143, 343, 355, 1279
TfiI	GAWTC	1 cut(s)	311
Tru1I	TTAA	3 cut(s)	536, 924, 1053
Tru9I	TTAA	3 cut(s)	536, 924, 1053
TscAI	CASTG	3 cut(s)	577, 1247, 1425
TseI	GCWGC	4 cut(s)	132, 343, 502, 605
TspDTI	ATGAA	3 cut(s)	507, 591, 1514
TspRI	CASTG	3 cut(s)	577, 1247, 1425
VpaK11BI	GGWCC	2 cut(s)	883, 1514
VspI	ATTAAT	1 cut(s)	1053
XapI	RAATTY	2 cut(s)	1010, 1426
XbaI	TCTAGA	1 cut(s)	1649
XceI	RCATGY	1 cut(s)	768
XmnI	GAANNNNTTC	2 cut(s)	591, 981
XspI	CTAG	3 cut(s)	1176, 1385, 1650
Zsp2I	ATGCAT	1 cut(s)	636

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.