Rw2G024090

Protein of unknown function (DUF3727)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0005107
Physical Location & Seq
Reverse (-)
35476938 .. 35481369
4432 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G024090.1

Sequence Viewer

Length: 684 bp
ATGGCTTTCTCAGTCTCCACAGCAACAGCCATAACCAGTTCCAGTCCCCAATTCCATTTCTTCTCTTTTCACTCCAATCACCTATTCCCCGTCTCCCTCTCTCTCCCAACCCACACCGCCAGACTCCTCGTCTCCTGCTGCGCCGCCGCAAAGCCTCAGACCGGCCCCGTCAAGAAGAAGCGCTCTCCTCCCTCACCCACCACCACCACCGCCGCCAACAACAACAAGAAAAAGCGTAAGGCCAAGGATAAGAATACCAGCTTTAGCAAGGTTGAAATTGTGGATGATTTCGGGTCTTCAGATTCCGGGTGGCTGGGTTACCATCCTACGCCGCTGCCGAAGCCGCCCGCTGGGTTTGTAGTGGATGATCACGGCAGGGTGCTTATGGCTTCGTCCAAGCGAATTGCCTCGATTGTTGATCCTACCAATAATTTCCCACTAGAGTGTGTTATAAGGAGAGTGTTCAGAAGCTCACGAGGGGATGAATGTATGCTGCTTTTCCCTGTTGACACGCCTGTTCAGATATTAAAGAGCACCAATATAGATGGTTGGTCAGCGTCTCATGCTGGGAAGGTTGTTGAGAGGCATTGGTATGACAAGAATAAGCATATTTTCCCTGCTTCTAGATGGGAGATATATGATCCAACGAAGAAATGGGAGCGTTACACCATCCATGGGGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3727

Protein Analysis

227

Amino Acids

25.3

Weight (kDa)

9.69

Isoelectric Point (pI)

57.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
XAP5 PF04921 186 - 223 5.6e-16 XAP5, circadian clock regulator C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 452
AciI CCGC 8 cut(s) 117, 144, 147, 210, 213, 332, 344, 348
AclWI GGATC 2 cut(s) 413, 635
AcuI CTGAAG 1 cut(s) 282
AfeI AGCGCT 1 cut(s) 182
AfiI CCNNNNNNNGG 3 cut(s) 161, 350, 675
AgsI TTSAA 1 cut(s) 275
AhdI GACNNNNNGTC 1 cut(s) 128
AjuI GAANNNNNNNTTGG 2 cut(s) 68, 100
AleI CACNNNNGTG 1 cut(s) 442
AluBI AGCT 2 cut(s) 261, 471
AluI AGCT 2 cut(s) 261, 471
Alw21I GWGCWC 1 cut(s) 536
Alw26I GTCTC 4 cut(s) 19, 97, 136, 564
AlwI GGATC 2 cut(s) 413, 635
Aor51HI AGCGCT 1 cut(s) 182
AoxI GGCC 2 cut(s) 163, 240
ApeKI GCWGC 3 cut(s) 138, 334, 493
AspLEI GCGC 2 cut(s) 143, 183
AspS9I GGNCC 1 cut(s) 164
AsuC2I CCSGG 1 cut(s) 307
AsuHPI GGTGA 2 cut(s) 71, 186
BauI CACGAG 1 cut(s) 474
BbsI GAAGAC 1 cut(s) 288
Bbv12I GWGCWC 1 cut(s) 536
BbvI GCAGC 3 cut(s) 125, 321, 480
BccI CCATC 4 cut(s) 330, 539, 621, 677
BceAI ACGGC 1 cut(s) 388
BclI TGATCA 1 cut(s) 367
BcnI CCSGG 1 cut(s) 307
BcoDI GTCTC 4 cut(s) 19, 97, 136, 564
BfaI CTAG 2 cut(s) 440, 624
BfoI RGCGCY 1 cut(s) 184
BisI GCNGC 8 cut(s) 139, 144, 147, 213, 332, 335, 344, 494
BlsI GCNGC 8 cut(s) 140, 145, 148, 214, 333, 336, 345, 495
Bme1390I CCNGG 1 cut(s) 307
BmeRI GACNNNNNGTC 1 cut(s) 128
BmgT120I GGNCC 1 cut(s) 164
BmiI GGNNCC 1 cut(s) 166
BmrFI CCNGG 1 cut(s) 307
BpiI GAAGAC 1 cut(s) 288
BpuMI CCSGG 1 cut(s) 307
BsaJI CCNNGG 2 cut(s) 243, 673
Bsc4I CCNNNNNNNGG 3 cut(s) 161, 350, 675
Bse118I RCCGGY 1 cut(s) 161
Bse1I ACTGG 2 cut(s) 36, 42
BseDI CCNNGG 2 cut(s) 243, 673
BseGI GGATG 5 cut(s) 289, 322, 370, 487, 669
BseLI CCNNNNNNNGG 3 cut(s) 161, 350, 675
BseMII CTCAG 2 cut(s) 24, 170
BseNI ACTGG 2 cut(s) 36, 42
BseRI GAGGAG 2 cut(s) 116, 177
BseXI GCAGC 3 cut(s) 125, 321, 480
BseYI CCCAGC 3 cut(s) 313, 350, 566
BshFI GGCC 2 cut(s) 165, 242
BsiHKAI GWGCWC 1 cut(s) 536
BsiSI CCGG 2 cut(s) 162, 306
BslFI GGGAC 1 cut(s) 30
BslI CCNNNNNNNGG 3 cut(s) 161, 350, 675
BsmAI GTCTC 4 cut(s) 19, 97, 136, 564
BsmBI CGTCTC 3 cut(s) 97, 136, 564
BsmFI GGGAC 1 cut(s) 30
BsnI GGCC 2 cut(s) 165, 242
Bsp1286I GDGCHC 1 cut(s) 536
Bsp143I GATC 3 cut(s) 367, 418, 640
Bsp19I CCATGG 1 cut(s) 673
BspACI CCGC 8 cut(s) 117, 144, 147, 210, 213, 332, 344, 348
BspANI GGCC 2 cut(s) 165, 242
BspCNI CTCAG 2 cut(s) 23, 169
BspLI GGNNCC 1 cut(s) 166
BspPI GGATC 2 cut(s) 413, 635
BsrFI RCCGGY 1 cut(s) 161
BsrI ACTGG 2 cut(s) 36, 42
BssAI RCCGGY 1 cut(s) 161
BssECI CCNNGG 2 cut(s) 243, 673
BssMI GATC 3 cut(s) 367, 418, 640
BssSI CACGAG 1 cut(s) 474
BssT1I CCWWGG 2 cut(s) 243, 673
Bst2BI CACGAG 1 cut(s) 474
BstC8I GCNNGC 1 cut(s) 348
BstDEI CTNAG 2 cut(s) 10, 156
BstDSI CCRYGG 1 cut(s) 673
BstEII GGTNACC 1 cut(s) 317
BstF5I GGATG 5 cut(s) 289, 322, 370, 487, 669
BstH2I RGCGCY 1 cut(s) 184
BstHHI GCGC 2 cut(s) 143, 183
BstKTI GATC 3 cut(s) 370, 421, 643
BstMAI GTCTC 4 cut(s) 19, 97, 136, 564
BstMBI GATC 3 cut(s) 367, 418, 640
BstMWI GCNNNNNNNGC 3 cut(s) 340, 343, 563
BstPI GGTNACC 1 cut(s) 317
BstSCI CCNGG 1 cut(s) 305
BstV1I GCAGC 3 cut(s) 125, 321, 480
BstV2I GAAGAC 1 cut(s) 288
BsuRI GGCC 2 cut(s) 165, 242
BtgI CCRYGG 1 cut(s) 673
BtsCI GGATG 5 cut(s) 289, 322, 370, 487, 669
Cac8I GCNNGC 1 cut(s) 348
CfoI GCGC 2 cut(s) 143, 183
Cfr10I RCCGGY 1 cut(s) 161
Cfr13I GGNCC 1 cut(s) 164
CseI GACGC 1 cut(s) 546
CviAII CATG 2 cut(s) 563, 674
DdeI CTNAG 2 cut(s) 10, 156
DpnI GATC 3 cut(s) 369, 420, 642
DpnII GATC 3 cut(s) 367, 418, 640
DriI GACNNNNNGTC 1 cut(s) 128
Eam1105I GACNNNNNGTC 1 cut(s) 128
Eco130I CCWWGG 2 cut(s) 243, 673
Eco47III AGCGCT 1 cut(s) 182
Eco57I CTGAAG 1 cut(s) 282
Eco91I GGTNACC 1 cut(s) 317
EcoO65I GGTNACC 1 cut(s) 317
EcoT14I CCWWGG 2 cut(s) 243, 673
ErhI CCWWGG 2 cut(s) 243, 673
Esp3I CGTCTC 3 cut(s) 97, 136, 564
FaeI CATG 2 cut(s) 566, 677
FaqI GGGAC 1 cut(s) 30
FatI CATG 2 cut(s) 562, 673
FauI CCCGC 1 cut(s) 355
FbaI TGATCA 1 cut(s) 367
Fnu4HI GCNGC 8 cut(s) 139, 144, 147, 213, 332, 335, 344, 494
FokI GGATG 5 cut(s) 296, 309, 377, 494, 656
Fsp4HI GCNGC 8 cut(s) 139, 144, 147, 213, 332, 335, 344, 494
FspBI CTAG 2 cut(s) 440, 624
GlaI GCGC 2 cut(s) 142, 182
GluI GCNGC 8 cut(s) 139, 144, 147, 213, 332, 335, 344, 494
GsaI CCCAGC 3 cut(s) 317, 354, 570
HaeII RGCGCY 1 cut(s) 184
HaeIII GGCC 2 cut(s) 165, 242
HapII CCGG 2 cut(s) 162, 306
HgaI GACGC 1 cut(s) 546
HhaI GCGC 2 cut(s) 143, 183
Hin1II CATG 2 cut(s) 566, 677
Hin6I GCGC 2 cut(s) 141, 181
HinP1I GCGC 2 cut(s) 141, 181
HincII GTYRAC 1 cut(s) 508
HindII GTYRAC 1 cut(s) 508
HinfI GANTC 2 cut(s) 123, 302
HpaII CCGG 2 cut(s) 162, 306
HphI GGTGA 2 cut(s) 71, 186
Hpy166II GTNNAC 1 cut(s) 508
Hpy188I TCNGA 4 cut(s) 159, 301, 467, 522
Hpy188III TCNNGA 3 cut(s) 172, 474, 624
Hpy8I GTNNAC 1 cut(s) 508
HpyAV CCTTC 1 cut(s) 565
HpyF10VI GCNNNNNNNGC 3 cut(s) 340, 343, 563
HpyF3I CTNAG 2 cut(s) 10, 156
Hsp92II CATG 2 cut(s) 566, 677
HspAI GCGC 2 cut(s) 141, 181
Ksp22I TGATCA 1 cut(s) 367
Kzo9I GATC 3 cut(s) 367, 418, 640
LmnI GCTCC 1 cut(s) 658
Lsp1109I GCAGC 3 cut(s) 125, 321, 480
MaeI CTAG 2 cut(s) 440, 624
MaeIII GTNAC 2 cut(s) 317, 662
MalI GATC 3 cut(s) 369, 420, 642
MboI GATC 3 cut(s) 367, 418, 640
MboII GAAGA 4 cut(s) 52, 187, 288, 661
MhlI GDGCHC 1 cut(s) 536
MluCI AATT 4 cut(s) 50, 276, 402, 430
MlyI GAGTC 1 cut(s) 117
MmeI TCCRAC 1 cut(s) 668
MnlI CCTC 8 cut(s) 107, 137, 165, 198, 202, 418, 470, 576
MseI TTAA 1 cut(s) 527
MslI CAYNNNNRTG 2 cut(s) 442, 591
MspA1I CMGCKG 2 cut(s) 334, 350
MspI CCGG 2 cut(s) 162, 306
MspR9I CCNGG 1 cut(s) 307
MwoI GCNNNNNNNGC 3 cut(s) 340, 343, 563
NciI CCSGG 1 cut(s) 307
NcoI CCATGG 1 cut(s) 673
NdeII GATC 3 cut(s) 367, 418, 640
NlaIII CATG 2 cut(s) 566, 677
NlaIV GGNNCC 1 cut(s) 166
OliI CACNNNNGTG 1 cut(s) 442
PcsI WCGNNNNNNNCGW 1 cut(s) 335
PfeI GAWTC 1 cut(s) 302
PkrI GCNGC 8 cut(s) 140, 145, 148, 214, 333, 336, 345, 495
PleI GAGTC 1 cut(s) 117
PpsI GAGTC 1 cut(s) 117
PsiI TTATAA 1 cut(s) 452
PspEI GGTNACC 1 cut(s) 317
PspFI CCCAGC 3 cut(s) 313, 350, 566
PspN4I GGNNCC 1 cut(s) 166
PspPI GGNCC 1 cut(s) 164
RseI CAYNNNNRTG 2 cut(s) 442, 591
SaqAI TTAA 1 cut(s) 527
SatI GCNGC 8 cut(s) 139, 144, 147, 213, 332, 335, 344, 494
Sau3AI GATC 3 cut(s) 367, 418, 640
Sau96I GGNCC 1 cut(s) 164
SchI GAGTC 1 cut(s) 117
ScrFI CCNGG 1 cut(s) 307
SduI GDGCHC 1 cut(s) 536
SetI ASST 5 cut(s) 84, 263, 273, 473, 576
SmiMI CAYNNNNRTG 2 cut(s) 442, 591
Sse9I AATT 4 cut(s) 50, 276, 402, 430
SsiI CCGC 8 cut(s) 117, 144, 147, 210, 213, 332, 344, 348
SspMI CTAG 2 cut(s) 440, 624
StyD4I CCNGG 1 cut(s) 305
StyI CCWWGG 2 cut(s) 243, 673
TaqI TCGA 1 cut(s) 410
TasI AATT 4 cut(s) 50, 276, 402, 430
TauI GCSGC 5 cut(s) 146, 149, 215, 334, 346
TfiI GAWTC 1 cut(s) 302
Tru1I TTAA 1 cut(s) 527
Tru9I TTAA 1 cut(s) 527
TseI GCWGC 3 cut(s) 138, 334, 493
TspDTI ATGAA 1 cut(s) 498
XbaI TCTAGA 1 cut(s) 623
XcmI CCANNNNNNNNNTGG 1 cut(s) 651
XspI CTAG 2 cut(s) 440, 624
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.