Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0005107

Physical Location & Seq

Genomic Coordinates Reverse (-)

23319148 .. 23328088

Gene Structure 8941 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G278200.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGGCATTCTCAGTCTCCACAACTCCATCAACCACTTCCAGTCTCCATCTGAAGCAAGCCCACTACTTTCCCTTGTTCACTTTCCACTTCAACCAGCTCTTCCCACTCTCAGTCTCCTTCCCAACTCCTTCCTCAACTCCCACCAGACTCCATATCTCTGTGTGCGCCGCTGCTAAGTCGCAGACTGGGCCTGTAAAGAAGCGCTCACCCTCGGGCACTAACAACAACAAGAAGAAAAAGCGTAAGGGGGGTGGTGGTGGTGATTCAGAGGATCTGAGCTTGAGTGATGTTGAAATTGTGGATAATTTGGGTGCTGGTGGAGTTGGGTCTTCCGGATCCGGTTCGAGTTCGAGGTCGCTTGGTTTCCATCCTACGCCGCTGCCAAAACCCCCAGCTGGGTTTGTGGTGGATGATCATGGGAAGGTGCTCATGGCTTCTTCCAAGCGAATTGCTTCCATTGTTGATCCTACCAATAATTTCCCTTTAGAGTGCGTTATAAGGAGAGTGTTCAGAAGCTCGCGGGGAGATGAATGTATGCTGCTTTGCCCAGTTGACACGCCTGTTCAAATATTAAAGAGCACAAACATAGATGGCTGGTCAGCTGTCAGTGATGAAGAAGCTGAAGTTATTCTTCCCGCTGCTGCTTATGCCCTTGCCAAGATACACATGCATCTGGTACATAGTGGATTCTGTTATACAGCACGGGGAGGCTTTTGTTACTCAGAGGATGACATATTTGATTTCCGAACAGATGATGGTCAAGATGTAGATGGCTTGCCCACTGAGGGTGTAGAAATTACGTGTTTCCATTTGGAAGGAGCACATTACATGATTTATACACCGTCTGATCCGCTTCTCTTTGTTGTTGTAAAGAATAATGATGGTCTGTTGCAAATTGCTGACGATGACCTGCTGGAGGATCCTGCAATCATTAGTGCCATAGATGAGGAGACTGAGTTTAATGCCTTGGTGGAGGAAGAAGCAGCTCTTCTTGATTCATTGCTAGGAAAAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3727

Protein Analysis

339

Amino Acids

36.31

Weight (kDa)

4.94

Isoelectric Point (pI)

55.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005107)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33480
fragaria_vesca	FvH4_1g25120 FvH4_1g25120 FvH4_1g25120 FvH4_1g25120 FvH4_1g25120 FvH4_1g25120 FvH4_1g25120 FvH4_1g25120
malus_domestica	MD00G1064700.v1.1
prunus_persica	Prupe.4G278200_v2.0.a1 Prupe.4G278200_v2.0.a1 Prupe.4G278200_v2.0.a1
pyrus_communis	pycom520g00290
rosa_chinensis	RchiOBHm_Chr2g0122781
rosa_laevigata	RLG00000018711
rosa_multiflora	Rmu_sc0008259.1_g000002 Rmu_sc0019417.1_g000001 Rmu_sc0032021.1_g000001 Rmu_sc0039730.1_g000001
rosa_roxburghii	Rroxscaffold_2G00121230
rosa_rugosa	Rorug02G0242400 Rorug02G0242500.1
rosa_samantha	Rh2AG300400 Rh2BG308500 Rh2CG287300 Rh2DG324600
rosa_wichuraiana	Rw2G023880 Rw2G024090 Rw2G024120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	497
Acc36I	ACCTGC	1 cut(s)	918
AccII	CGCG	1 cut(s)	520
AccIII	TCCGGA	1 cut(s)	332
AciI	CCGC	5 cut(s)	168, 377, 520, 636, 851
AclWI	GGATC	7 cut(s)	279, 330, 343, 458, 842, 914, 927
AcuI	CTGAAG	2 cut(s)	71, 642
AfaI	GTAC	1 cut(s)	678
AfeI	AGCGCT	1 cut(s)	203
AfiI	CCNNNNNNNGG	4 cut(s)	395, 396, 785, 916
AflIII	ACRYGT	1 cut(s)	800
AgsI	TTSAA	3 cut(s)	91, 293, 566
AluBI	AGCT	7 cut(s)	97, 279, 395, 516, 602, 620, 986
AluI	AGCT	7 cut(s)	97, 279, 395, 516, 602, 620, 986
Alw21I	GWGCWC	3 cut(s)	429, 581, 823
Alw26I	GTCTC	4 cut(s)	19, 47, 118, 944
AlwI	GGATC	7 cut(s)	279, 330, 343, 458, 842, 914, 927
Ama87I	CYCGRG	1 cut(s)	211
Aor13HI	TCCGGA	1 cut(s)	332
Aor51HI	AGCGCT	1 cut(s)	203
AoxI	GGCC	1 cut(s)	188
ApeKI	GCWGC	6 cut(s)	170, 379, 538, 638, 641, 983
Asp700I	GAANNNNTTC	2 cut(s)	451, 627
AspLEI	GCGC	2 cut(s)	167, 204
AspS9I	GGNCC	1 cut(s)	188
AsuHPI	GGTGA	2 cut(s)	198, 272
AvaI	CYCGRG	1 cut(s)	211
BaeGI	GKGCMC	1 cut(s)	218
BamHI	GGATCC	2 cut(s)	335, 919
BbsI	GAAGAC	1 cut(s)	321
Bbv12I	GWGCWC	3 cut(s)	429, 581, 823
BbvI	GCAGC	6 cut(s)	157, 366, 525, 625, 628, 995
BccI	CCATC	7 cut(s)	34, 54, 375, 584, 749, 764, 875
BclI	TGATCA	1 cut(s)	412
BcoDI	GTCTC	4 cut(s)	19, 47, 118, 944
BfaI	CTAG	1 cut(s)	1004
BfoI	RGCGCY	1 cut(s)	205
BfuAI	ACCTGC	1 cut(s)	918
BisI	GCNGC	8 cut(s)	168, 171, 377, 380, 539, 639, 642, 984
BlsI	GCNGC	8 cut(s)	169, 172, 378, 381, 540, 640, 643, 985
BmeT110I	CYCGRG	1 cut(s)	211
BmgT120I	GGNCC	1 cut(s)	188
BmiI	GGNNCC	2 cut(s)	337, 921
BmrI	ACTGGG	2 cut(s)	195, 542
BmsI	GCATC	1 cut(s)	679
BmuI	ACTGGG	2 cut(s)	195, 542
BpiI	GAAGAC	1 cut(s)	321
BpmI	CTGGAG	1 cut(s)	935
BpuEI	CTTGAG	1 cut(s)	301
BsaAI	YACGTR	1 cut(s)	801
BsaJI	CCNNGG	2 cut(s)	210, 966
BsaWI	WCCGGW	2 cut(s)	332, 338
BsaXI	ACNNNNNCTCC	2 cut(s)	941, 971
Bsc4I	CCNNNNNNNGG	4 cut(s)	395, 396, 785, 916
Bse1I	ACTGG	3 cut(s)	39, 190, 548
Bse3DI	GCAATG	1 cut(s)	998
BseAI	TCCGGA	1 cut(s)	332
BseDI	CCNNGG	2 cut(s)	210, 966
BseGI	GGATG	3 cut(s)	367, 415, 733
BseLI	CCNNNNNNNGG	4 cut(s)	395, 396, 785, 916
BseMI	GCAATG	1 cut(s)	998
BseMII	CTCAG	6 cut(s)	24, 123, 266, 735, 774, 945
BseNI	ACTGG	3 cut(s)	39, 190, 548
BseRI	GAGGAG	1 cut(s)	962
BseSI	GKGCMC	1 cut(s)	218
BseXI	GCAGC	6 cut(s)	157, 366, 525, 625, 628, 995
BseYI	CCCAGC	2 cut(s)	391, 395
Bsh1236I	CGCG	1 cut(s)	520
BshFI	GGCC	1 cut(s)	190
BsiHKAI	GWGCWC	3 cut(s)	429, 581, 823
BsiHKCI	CYCGRG	1 cut(s)	211
BsiSI	CCGG	2 cut(s)	333, 339
BslI	CCNNNNNNNGG	4 cut(s)	395, 396, 785, 916
BsmAI	GTCTC	4 cut(s)	19, 47, 118, 944
BsmI	GAATGC	1 cut(s)	5
BsnI	GGCC	1 cut(s)	190
BsoBI	CYCGRG	1 cut(s)	211
Bsp1286I	GDGCHC	4 cut(s)	218, 429, 581, 823
Bsp13I	TCCGGA	1 cut(s)	332
Bsp143I	GATC	6 cut(s)	271, 335, 412, 463, 847, 919
BspACI	CCGC	5 cut(s)	168, 377, 520, 636, 851
BspANI	GGCC	1 cut(s)	190
BspCNI	CTCAG	6 cut(s)	23, 122, 267, 734, 775, 946
BspEI	TCCGGA	1 cut(s)	332
BspFNI	CGCG	1 cut(s)	520
BspLI	GGNNCC	2 cut(s)	337, 921
BspMI	ACCTGC	1 cut(s)	918
BspPI	GGATC	7 cut(s)	279, 330, 343, 458, 842, 914, 927
BspQI	GCTCTTC	2 cut(s)	104, 993
BsrDI	GCAATG	1 cut(s)	998
BsrI	ACTGG	3 cut(s)	39, 190, 548
BssECI	CCNNGG	2 cut(s)	210, 966
BssMI	GATC	6 cut(s)	271, 335, 412, 463, 847, 919
BssT1I	CCWWGG	1 cut(s)	966
Bst4CI	ACNGT	1 cut(s)	843
Bst6I	CTCTTC	2 cut(s)	104, 993
BstBAI	YACGTR	1 cut(s)	801
BstC8I	GCNNGC	3 cut(s)	57, 518, 776
BstDEI	CTNAG	7 cut(s)	10, 109, 174, 275, 721, 783, 954
BstENI	CCTNNNNNAGG	1 cut(s)	914
BstF5I	GGATG	3 cut(s)	367, 415, 733
BstFNI	CGCG	1 cut(s)	520
BstH2I	RGCGCY	1 cut(s)	205
BstHHI	GCGC	2 cut(s)	167, 204
BstKTI	GATC	6 cut(s)	274, 338, 415, 466, 850, 922
BstMAI	GTCTC	4 cut(s)	19, 47, 118, 944
BstMBI	GATC	6 cut(s)	271, 335, 412, 463, 847, 919
BstMWI	GCNNNNNNNGC	2 cut(s)	187, 647
BstNSI	RCATGY	1 cut(s)	670
BstSLI	GKGCMC	1 cut(s)	218
BstUI	CGCG	1 cut(s)	520
BstV1I	GCAGC	6 cut(s)	157, 366, 525, 625, 628, 995
BstV2I	GAAGAC	1 cut(s)	321
BstX2I	RGATCY	3 cut(s)	271, 335, 919
BstYI	RGATCY	3 cut(s)	271, 335, 919
BsuRI	GGCC	1 cut(s)	190
BtsCI	GGATG	3 cut(s)	367, 415, 733
BtsIMutI	CAGTG	2 cut(s)	613, 780
BveI	ACCTGC	1 cut(s)	918
Cac8I	GCNNGC	3 cut(s)	57, 518, 776
CfoI	GCGC	2 cut(s)	167, 204
Cfr13I	GGNCC	1 cut(s)	188
Csp6I	GTAC	1 cut(s)	677
CviAII	CATG	4 cut(s)	416, 430, 667, 829
CviQI	GTAC	1 cut(s)	677
DdeI	CTNAG	7 cut(s)	10, 109, 174, 275, 721, 783, 954
DpnI	GATC	6 cut(s)	273, 337, 414, 465, 849, 921
DpnII	GATC	6 cut(s)	271, 335, 412, 463, 847, 919
Eam1104I	CTCTTC	2 cut(s)	104, 993
EarI	CTCTTC	2 cut(s)	104, 993
Eco130I	CCWWGG	1 cut(s)	966
Eco47III	AGCGCT	1 cut(s)	203
Eco57I	CTGAAG	2 cut(s)	71, 642
Eco88I	CYCGRG	1 cut(s)	211
EcoNI	CCTNNNNNAGG	1 cut(s)	914
EcoT14I	CCWWGG	1 cut(s)	966
EcoT22I	ATGCAT	1 cut(s)	672
ErhI	CCWWGG	1 cut(s)	966
FaeI	CATG	4 cut(s)	419, 433, 670, 832
FalI	AAGNNNNNCTT	4 cut(s)	615, 647, 972, 1004
FatI	CATG	4 cut(s)	415, 429, 666, 828
FauI	CCCGC	2 cut(s)	513, 643
FbaI	TGATCA	1 cut(s)	412
Fnu4HI	GCNGC	8 cut(s)	168, 171, 377, 380, 539, 639, 642, 984
FokI	GGATG	3 cut(s)	354, 422, 740
Fsp4HI	GCNGC	8 cut(s)	168, 171, 377, 380, 539, 639, 642, 984
FspBI	CTAG	1 cut(s)	1004
GlaI	GCGC	2 cut(s)	166, 203
GluI	GCNGC	8 cut(s)	168, 171, 377, 380, 539, 639, 642, 984
GsaI	CCCAGC	2 cut(s)	395, 399
GsuI	CTGGAG	1 cut(s)	935
HaeII	RGCGCY	1 cut(s)	205
HaeIII	GGCC	1 cut(s)	190
HapII	CCGG	2 cut(s)	333, 339
HhaI	GCGC	2 cut(s)	167, 204
Hin1II	CATG	4 cut(s)	419, 433, 670, 832
Hin6I	GCGC	2 cut(s)	165, 202
HinP1I	GCGC	2 cut(s)	165, 202
HincII	GTYRAC	1 cut(s)	553
HindII	GTYRAC	1 cut(s)	553
HinfI	GANTC	4 cut(s)	147, 263, 687, 995
HpaII	CCGG	2 cut(s)	333, 339
HphI	GGTGA	2 cut(s)	198, 272
Hpy166II	GTNNAC	2 cut(s)	78, 553
Hpy188I	TCNGA	7 cut(s)	51, 268, 276, 512, 724, 746, 847
Hpy188III	TCNNGA	3 cut(s)	333, 761, 992
Hpy8I	GTNNAC	2 cut(s)	78, 553
HpyAV	CCTTC	4 cut(s)	127, 138, 415, 809
HpyCH4III	ACNGT	1 cut(s)	843
HpyCH4IV	ACGT	1 cut(s)	800
HpyCH4V	TGCA	3 cut(s)	670, 892, 926
HpyF10VI	GCNNNNNNNGC	2 cut(s)	187, 647
HpyF3I	CTNAG	7 cut(s)	10, 109, 174, 275, 721, 783, 954
HpySE526I	ACGT	1 cut(s)	800
Hsp92II	CATG	4 cut(s)	419, 433, 670, 832
HspAI	GCGC	2 cut(s)	165, 202
Kpn2I	TCCGGA	1 cut(s)	332
Ksp22I	TGATCA	1 cut(s)	412
Kzo9I	GATC	6 cut(s)	271, 335, 412, 463, 847, 919
LguI	GCTCTTC	2 cut(s)	104, 993
LmnI	GCTCC	1 cut(s)	818
Lsp1109I	GCAGC	6 cut(s)	157, 366, 525, 625, 628, 995
LweI	GCATC	1 cut(s)	679
MaeI	CTAG	1 cut(s)	1004
MaeII	ACGT	1 cut(s)	800
MaeIII	GTNAC	1 cut(s)	716
MalI	GATC	6 cut(s)	273, 337, 414, 465, 849, 921
MboI	GATC	6 cut(s)	271, 335, 412, 463, 847, 919
MboII	GAAGA	8 cut(s)	91, 244, 321, 429, 623, 626, 980, 989
MflI	RGATCY	3 cut(s)	271, 335, 919
MhlI	GDGCHC	4 cut(s)	218, 429, 581, 823
MluCI	AATT	6 cut(s)	294, 304, 447, 475, 795, 894
MlyI	GAGTC	1 cut(s)	141
Mph1103I	ATGCAT	1 cut(s)	672
MroI	TCCGGA	1 cut(s)	332
MroXI	GAANNNNTTC	2 cut(s)	451, 627
MseI	TTAA	2 cut(s)	572, 960
MspA1I	CMGCKG	5 cut(s)	170, 379, 395, 602, 638
MspI	CCGG	2 cut(s)	333, 339
Mva1269I	GAATGC	1 cut(s)	5
MvnI	CGCG	1 cut(s)	520
MwoI	GCNNNNNNNGC	2 cut(s)	187, 647
NdeII	GATC	6 cut(s)	271, 335, 412, 463, 847, 919
NlaIII	CATG	4 cut(s)	419, 433, 670, 832
NlaIV	GGNNCC	2 cut(s)	337, 921
NsiI	ATGCAT	1 cut(s)	672
NspI	RCATGY	1 cut(s)	670
PciSI	GCTCTTC	2 cut(s)	104, 993
PctI	GAATGC	1 cut(s)	5
PdmI	GAANNNNTTC	2 cut(s)	451, 627
PfeI	GAWTC	3 cut(s)	263, 687, 995
PkrI	GCNGC	8 cut(s)	169, 172, 378, 381, 540, 640, 643, 985
PleI	GAGTC	1 cut(s)	141
PpsI	GAGTC	1 cut(s)	141
Ppu21I	YACGTR	1 cut(s)	801
PsiI	TTATAA	1 cut(s)	497
PspFI	CCCAGC	2 cut(s)	391, 395
PspN4I	GGNNCC	2 cut(s)	337, 921
PspPI	GGNCC	1 cut(s)	188
PsuI	RGATCY	3 cut(s)	271, 335, 919
PvuII	CAGCTG	2 cut(s)	395, 602
RsaI	GTAC	1 cut(s)	678
RsaNI	GTAC	1 cut(s)	677
SapI	GCTCTTC	2 cut(s)	104, 993
SaqAI	TTAA	2 cut(s)	572, 960
SatI	GCNGC	8 cut(s)	168, 171, 377, 380, 539, 639, 642, 984
Sau3AI	GATC	6 cut(s)	271, 335, 412, 463, 847, 919
Sau96I	GGNCC	1 cut(s)	188
SchI	GAGTC	1 cut(s)	141
SduI	GDGCHC	4 cut(s)	218, 429, 581, 823
SfaNI	GCATC	1 cut(s)	679
SmlI	CTYRAG	1 cut(s)	280
SmoI	CTYRAG	1 cut(s)	280
Sse9I	AATT	6 cut(s)	294, 304, 447, 475, 795, 894
SsiI	CCGC	5 cut(s)	168, 377, 520, 636, 851
SspI	AATATT	1 cut(s)	570
SspMI	CTAG	1 cut(s)	1004
StyI	CCWWGG	1 cut(s)	966
TaaI	ACNGT	1 cut(s)	843
TaiI	ACGT	1 cut(s)	803
TaqI	TCGA	2 cut(s)	344, 350
TasI	AATT	6 cut(s)	294, 304, 447, 475, 795, 894
TauI	GCSGC	2 cut(s)	170, 379
TfiI	GAWTC	3 cut(s)	263, 687, 995
Tru1I	TTAA	2 cut(s)	572, 960
Tru9I	TTAA	2 cut(s)	572, 960
TscAI	CASTG	2 cut(s)	613, 787
TseI	GCWGC	6 cut(s)	170, 379, 538, 638, 641, 983
TspDTI	ATGAA	3 cut(s)	543, 627, 987
TspRI	CASTG	2 cut(s)	613, 787
XagI	CCTNNNNNAGG	1 cut(s)	914
XceI	RCATGY	1 cut(s)	670
XmnI	GAANNNNTTC	2 cut(s)	451, 627
XspI	CTAG	1 cut(s)	1004
Zsp2I	ATGCAT	1 cut(s)	672

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.