Rh2DG324600

Protein of unknown function (DUF3727)

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Forward (+)
40829191 .. 40840413
11223 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG324600.1

Sequence Viewer

Length: 1392 bp
ATGGCTTTCTCAGTCTCCACAGCCACAGCCACAGCCACAGCCACTTCCAGTCCCCAATTCCATTTCTTCTCTTTTCACTCCAATCACCAATTCCCAGTCTCCCTCTCTCTCCCAACCCACACCGCCAGACTCGTCGTCTCCTGCTGCGCCGCCGCAAAGCCTCAGACCGGCCCTGTCAAGAAGAAGCGCTCTCCTCCCTCGCCCACCACCACCACCCCCGCCAACAACAAGGTTGAAATTGTGGATGATTTCGGGTCTTCAGATTCCGGGTCGCTGGGTTACCATCCTACGCCGCTGCCGAAGCCGCCCGCTGGGTTTGTAGTGGATGATCACGGCAGGGTGCTTATGGCTTCGTCCAAGCGAATTGCCTCGATTGTTGATCCTACCAATAATTTCCCACTAGAGTGTGTTATAAGGAGAGTGTTCAGAAGCTCACGAGGGGATGAATGTATGCTGCTTTGCCCTGTTGACACGCCTGTTCAGATATTAAAGAGCACCAATATAGATGGTTGGTCAGCGGTCAGTGATGAAGAAGTTGAGGCTATTCTTCCCTCTGCTGCTTATGCCCTTGCCAAGATACATATGCATCTTGTACATAGCGGCTTTTGTTATACAGCAAGGGGAGGGTTTTGTTACTCAGAAGATGACATATTTGATTTTCGCACAGATGATGGTGAAGATGTAGATGGCTTGCCAACTGAGGGTGTTGAGATTACATGTTTCCATTTGGATGGTGCGCATTACATGGTTTATACACCCTCTGACCCACTTCTCTTTGTTGCTGTAAAGGATCTGCTGGAGGATCCTGCTATCATTAGTGCCATAGACGAGGAGACCGAGTTTAACGCATTGGTGAGAGTAAATATTCGGAACAAAATCGAGGAGGAAGAGAAGGAAAAGCTTCAGAAGCTTCAACAGGAAGAGGAGGAATTTCAGTTACAGAAGCGTAAGAAGAGGAAGGTCAAGGGGATTAATCGATTGTCCTTTGCCGATGACATTGAGGATGGTAGTGAAGAGGAAGATGGAGAAAATAAAAGTACAGAGACTACAAGATTATGGTCTGGTAGATTTGGCAAAGATCCTACTGTGGAAACTAGCTTTCTGCCAGATAGTGAGCGGGAGGCAGAGGAACAAGCTGAGCGTGAAAGGTTGCGAAAACAGTGGTTTCTTGAGCAGGAGAAGATACGAAATGAGCCACTTCAAATTACTTACAGTTACTGGGATGGAGCAGGGCATAGGCGGACGATCCAGGTTCGAAAGGGGGATAAAATAGGAGATTTTCTTCGCTCTGTTCAACAGCAACTAGCACCTGAGTTTCGAGAAGTTCGAACTACCTCAGTGGAGAATTTGCTATATGTAAAAGAAGATCTTATCATTCCGCATGTAAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

463

Amino Acids

52.08

Weight (kDa)

5.19

Isoelectric Point (pI)

59.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3727 PF12527 194 - 274 3.3e-17 Protein of unknown function (DUF3727)
XAP5 PF04921 399 - 461 3e-16 XAP5, circadian clock regulator C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 413
Acc16I TGCGCA 1 cut(s) 738
AccBSI CCGCTC 1 cut(s) 1117
AclWI GGATC 6 cut(s) 374, 797, 798, 810, 1073, 1240
AcsI RAATTY 2 cut(s) 929, 1345
AcuI CTGAAG 2 cut(s) 243, 887
AfaI GTAC 2 cut(s) 594, 1039
AfeI AGCGCT 1 cut(s) 188
AfiI CCNNNNNNNGG 3 cut(s) 167, 311, 701
AflIII ACRYGT 1 cut(s) 716
AgsI TTSAA 4 cut(s) 236, 914, 1202, 1295
AhdI GACNNNNNGTC 1 cut(s) 134
AjnI CCWGG 1 cut(s) 1248
AjuI GAANNNNNNNTTGG 2 cut(s) 74, 106
AleI CACNNNNGTG 1 cut(s) 403
AluBI AGCT 5 cut(s) 432, 901, 910, 1098, 1136
AluI AGCT 5 cut(s) 432, 901, 910, 1098, 1136
Alw21I GWGCWC 1 cut(s) 497
Alw26I GTCTC 5 cut(s) 19, 103, 142, 827, 1037
AlwI GGATC 6 cut(s) 374, 797, 798, 810, 1073, 1240
AlwNI CAGNNNCTG 1 cut(s) 1218
Aor51HI AGCGCT 1 cut(s) 188
AoxI GGCC 1 cut(s) 169
ApeKI GCWGC 4 cut(s) 144, 295, 454, 557
ApoI RAATTY 2 cut(s) 929, 1345
AseI ATTAAT 1 cut(s) 972
Asp700I GAANNNNTTC 1 cut(s) 900
AspLEI GCGC 3 cut(s) 149, 189, 739
AspS9I GGNCC 1 cut(s) 170
AsuC2I CCSGG 1 cut(s) 268
AsuHPI GGTGA 3 cut(s) 77, 686, 865
AsuII TTCGAA 2 cut(s) 1255, 1327
BamHI GGATCC 1 cut(s) 802
BauI CACGAG 1 cut(s) 435
BbsI GAAGAC 1 cut(s) 249
Bbv12I GWGCWC 1 cut(s) 497
BbvI GCAGC 4 cut(s) 131, 282, 441, 544
BccI CCATC 8 cut(s) 291, 500, 665, 680, 725, 998, 1016, 1217
BceAI ACGGC 1 cut(s) 349
BciT130I CCWGG 1 cut(s) 1250
BclI TGATCA 1 cut(s) 328
BcnI CCSGG 1 cut(s) 268
BcoDI GTCTC 5 cut(s) 19, 103, 142, 827, 1037
BfaI CTAG 3 cut(s) 401, 1095, 1304
BfoI RGCGCY 1 cut(s) 190
BglII AGATCT 1 cut(s) 1366
BisI GCNGC 9 cut(s) 145, 150, 153, 293, 296, 305, 455, 558, 601
BlpI GCTNAGC 1 cut(s) 1137
BlsI GCNGC 9 cut(s) 146, 151, 154, 294, 297, 306, 456, 559, 602
Bme1390I CCNGG 2 cut(s) 268, 1250
BmeRI GACNNNNNGTC 1 cut(s) 134
BmgT120I GGNCC 1 cut(s) 170
BmiI GGNNCC 1 cut(s) 804
BmrFI CCNGG 2 cut(s) 268, 1250
BmrI ACTGGG 2 cut(s) 89, 1228
BmsI GCATC 1 cut(s) 595
BmuI ACTGGG 2 cut(s) 89, 1228
BpiI GAAGAC 1 cut(s) 249
BpmI CTGGAG 1 cut(s) 818
Bpu1102I GCTNAGC 1 cut(s) 1137
Bpu14I TTCGAA 2 cut(s) 1255, 1327
BpuEI CTTGAG 1 cut(s) 1190
BpuMI CCSGG 1 cut(s) 268
Bsa29I ATCGAT 1 cut(s) 976
BsaI GGTCTC 1 cut(s) 827
BsaXI ACNNNNNCTCC 2 cut(s) 824, 854
Bsc4I CCNNNNNNNGG 3 cut(s) 167, 311, 701
Bse118I RCCGGY 1 cut(s) 167
Bse1I ACTGG 3 cut(s) 48, 95, 1223
BseBI CCWGG 1 cut(s) 1250
BseCI ATCGAT 1 cut(s) 976
BseGI GGATG 7 cut(s) 250, 283, 331, 448, 736, 1009, 1228
BseLI CCNNNNNNNGG 3 cut(s) 167, 311, 701
BseMII CTCAG 7 cut(s) 24, 176, 651, 690, 1128, 1302, 1350
BseNI ACTGG 3 cut(s) 48, 95, 1223
BseRI GAGGAG 4 cut(s) 183, 845, 896, 938
BseXI GCAGC 4 cut(s) 131, 282, 441, 544
BseYI CCCAGC 2 cut(s) 274, 311
BshFI GGCC 1 cut(s) 171
BshVI ATCGAT 1 cut(s) 976
BsiHKAI GWGCWC 1 cut(s) 497
BsiSI CCGG 2 cut(s) 168, 267
BslFI GGGAC 1 cut(s) 36
BslI CCNNNNNNNGG 3 cut(s) 167, 311, 701
BsmAI GTCTC 5 cut(s) 19, 103, 142, 827, 1037
BsmBI CGTCTC 1 cut(s) 142
BsmFI GGGAC 1 cut(s) 36
BsnI GGCC 1 cut(s) 171
Bso31I GGTCTC 1 cut(s) 827
Bsp119I TTCGAA 2 cut(s) 1255, 1327
Bsp1286I GDGCHC 1 cut(s) 497
Bsp1407I TGTACA 1 cut(s) 592
Bsp143I GATC 7 cut(s) 328, 379, 790, 802, 1078, 1245, 1366
Bsp1720I GCTNAGC 1 cut(s) 1137
BspANI GGCC 1 cut(s) 171
BspCNI CTCAG 7 cut(s) 23, 175, 650, 691, 1129, 1303, 1349
BspDI ATCGAT 1 cut(s) 976
BspLI GGNNCC 1 cut(s) 804
BspPI GGATC 6 cut(s) 374, 797, 798, 810, 1073, 1240
BspT104I TTCGAA 2 cut(s) 1255, 1327
BspTNI GGTCTC 1 cut(s) 827
BsrBI CCGCTC 1 cut(s) 1117
BsrFI RCCGGY 1 cut(s) 167
BsrGI TGTACA 1 cut(s) 592
BsrI ACTGG 3 cut(s) 48, 95, 1223
BssAI RCCGGY 1 cut(s) 167
BssMI GATC 7 cut(s) 328, 379, 790, 802, 1078, 1245, 1366
BssSI CACGAG 1 cut(s) 435
Bst2BI CACGAG 1 cut(s) 435
Bst2UI CCWGG 1 cut(s) 1250
Bst4CI ACNGT 3 cut(s) 1087, 1161, 1214
Bst6I CTCTTC 4 cut(s) 882, 915, 947, 1008
BstAUI TGTACA 1 cut(s) 592
BstBI TTCGAA 2 cut(s) 1255, 1327
BstC8I GCNNGC 2 cut(s) 309, 692
BstDEI CTNAG 7 cut(s) 10, 162, 637, 699, 1137, 1311, 1336
BstEII GGTNACC 1 cut(s) 278
BstF5I GGATG 7 cut(s) 250, 283, 331, 448, 736, 1009, 1228
BstH2I RGCGCY 1 cut(s) 190
BstHHI GCGC 3 cut(s) 149, 189, 739
BstKTI GATC 7 cut(s) 331, 382, 793, 805, 1081, 1248, 1369
BstMAI GTCTC 5 cut(s) 19, 103, 142, 827, 1037
BstMBI GATC 7 cut(s) 328, 379, 790, 802, 1078, 1245, 1366
BstMWI GCNNNNNNNGC 4 cut(s) 301, 304, 563, 907
BstNI CCWGG 1 cut(s) 1250
BstNSI RCATGY 2 cut(s) 720, 1385
BstPI GGTNACC 1 cut(s) 278
BstSCI CCNGG 2 cut(s) 266, 1248
BstV1I GCAGC 4 cut(s) 131, 282, 441, 544
BstV2I GAAGAC 1 cut(s) 249
BstX2I RGATCY 4 cut(s) 790, 802, 1078, 1366
BstXI CCANNNNNNTGG 1 cut(s) 731
BstYI RGATCY 4 cut(s) 790, 802, 1078, 1366
Bsu15I ATCGAT 1 cut(s) 976
BsuRI GGCC 1 cut(s) 171
BsuTUI ATCGAT 1 cut(s) 976
BtsCI GGATG 7 cut(s) 250, 283, 331, 448, 736, 1009, 1228
BtsIMutI CAGTG 3 cut(s) 529, 1166, 1344
Cac8I GCNNGC 2 cut(s) 309, 692
CaiI CAGNNNCTG 1 cut(s) 1218
CfoI GCGC 3 cut(s) 149, 189, 739
Cfr10I RCCGGY 1 cut(s) 167
Cfr13I GGNCC 1 cut(s) 170
ClaI ATCGAT 1 cut(s) 976
Csp6I GTAC 2 cut(s) 593, 1038
CviAII CATG 3 cut(s) 717, 745, 1382
CviQI GTAC 2 cut(s) 593, 1038
DdeI CTNAG 7 cut(s) 10, 162, 637, 699, 1137, 1311, 1336
DpnI GATC 7 cut(s) 330, 381, 792, 804, 1080, 1247, 1368
DpnII GATC 7 cut(s) 328, 379, 790, 802, 1078, 1245, 1366
DriI GACNNNNNGTC 1 cut(s) 134
Eam1104I CTCTTC 4 cut(s) 882, 915, 947, 1008
Eam1105I GACNNNNNGTC 1 cut(s) 134
EarI CTCTTC 4 cut(s) 882, 915, 947, 1008
EciI GGCGGA 1 cut(s) 1255
Eco31I GGTCTC 1 cut(s) 827
Eco47III AGCGCT 1 cut(s) 188
Eco57I CTGAAG 2 cut(s) 243, 887
Eco91I GGTNACC 1 cut(s) 278
EcoO65I GGTNACC 1 cut(s) 278
EcoRII CCWGG 1 cut(s) 1248
EcoT22I ATGCAT 1 cut(s) 588
Esp3I CGTCTC 1 cut(s) 142
FaeI CATG 3 cut(s) 720, 748, 1385
FalI AAGNNNNNCTT 2 cut(s) 1353, 1385
FaqI GGGAC 1 cut(s) 36
FatI CATG 3 cut(s) 716, 744, 1381
FauI CCCGC 3 cut(s) 226, 316, 1110
FauNDI CATATG 1 cut(s) 582
FbaI TGATCA 1 cut(s) 328
Fnu4HI GCNGC 9 cut(s) 145, 150, 153, 293, 296, 305, 455, 558, 601
FokI GGATG 7 cut(s) 257, 270, 338, 455, 743, 1016, 1235
Fsp4HI GCNGC 9 cut(s) 145, 150, 153, 293, 296, 305, 455, 558, 601
FspAI RTGCGCAY 1 cut(s) 738
FspBI CTAG 3 cut(s) 401, 1095, 1304
FspI TGCGCA 1 cut(s) 738
GlaI GCGC 3 cut(s) 148, 188, 738
GluI GCNGC 9 cut(s) 145, 150, 153, 293, 296, 305, 455, 558, 601
GsaI CCCAGC 2 cut(s) 278, 315
GsuI CTGGAG 1 cut(s) 818
HaeII RGCGCY 1 cut(s) 190
HaeIII GGCC 1 cut(s) 171
HapII CCGG 2 cut(s) 168, 267
HhaI GCGC 3 cut(s) 149, 189, 739
Hin1II CATG 3 cut(s) 720, 748, 1385
Hin6I GCGC 3 cut(s) 147, 187, 737
HinP1I GCGC 3 cut(s) 147, 187, 737
HincII GTYRAC 1 cut(s) 469
HindII GTYRAC 1 cut(s) 469
HindIII AAGCTT 2 cut(s) 899, 908
HinfI GANTC 2 cut(s) 129, 263
HpaII CCGG 2 cut(s) 168, 267
HphI GGTGA 3 cut(s) 77, 686, 865
Hpy166II GTNNAC 1 cut(s) 469
Hpy188I TCNGA 8 cut(s) 165, 262, 428, 483, 640, 763, 870, 906
Hpy188III TCNNGA 4 cut(s) 178, 435, 1169, 1319
Hpy8I GTNNAC 1 cut(s) 469
Hpy99I CGWCG 1 cut(s) 137
HpyAV CCTTC 2 cut(s) 886, 952
HpyCH4III ACNGT 3 cut(s) 1087, 1161, 1214
HpyCH4V TGCA 1 cut(s) 586
HpyF10VI GCNNNNNNNGC 4 cut(s) 301, 304, 563, 907
HpyF3I CTNAG 7 cut(s) 10, 162, 637, 699, 1137, 1311, 1336
Hsp92II CATG 3 cut(s) 720, 748, 1385
HspAI GCGC 3 cut(s) 147, 187, 737
Ksp22I TGATCA 1 cut(s) 328
Kzo9I GATC 7 cut(s) 328, 379, 790, 802, 1078, 1245, 1366
LmnI GCTCC 1 cut(s) 1226
Lsp1109I GCAGC 4 cut(s) 131, 282, 441, 544
LweI GCATC 1 cut(s) 595
MaeI CTAG 3 cut(s) 401, 1095, 1304
MaeIII GTNAC 4 cut(s) 278, 632, 936, 1214
MalI GATC 7 cut(s) 330, 381, 792, 804, 1080, 1247, 1368
MbiI CCGCTC 1 cut(s) 1117
MboI GATC 7 cut(s) 328, 379, 790, 802, 1078, 1245, 1366
MflI RGATCY 4 cut(s) 790, 802, 1078, 1366
MhlI GDGCHC 1 cut(s) 497
MluCI AATT 8 cut(s) 56, 89, 237, 363, 391, 929, 1203, 1345
MlyI GAGTC 1 cut(s) 123
Mph1103I ATGCAT 1 cut(s) 588
MroXI GAANNNNTTC 1 cut(s) 900
MseI TTAA 3 cut(s) 488, 843, 972
MslI CAYNNNNRTG 2 cut(s) 403, 729
MspA1I CMGCKG 3 cut(s) 295, 311, 518
MspI CCGG 2 cut(s) 168, 267
MspR9I CCNGG 2 cut(s) 268, 1250
MvaI CCWGG 1 cut(s) 1250
MwoI GCNNNNNNNGC 4 cut(s) 301, 304, 563, 907
NciI CCSGG 1 cut(s) 268
NdeI CATATG 1 cut(s) 582
NdeII GATC 7 cut(s) 328, 379, 790, 802, 1078, 1245, 1366
NlaIII CATG 3 cut(s) 720, 748, 1385
NlaIV GGNNCC 1 cut(s) 804
NsbI TGCGCA 1 cut(s) 738
NsiI ATGCAT 1 cut(s) 588
NspI RCATGY 2 cut(s) 720, 1385
NspV TTCGAA 2 cut(s) 1255, 1327
OliI CACNNNNGTG 1 cut(s) 403
PciI ACATGT 1 cut(s) 716
PcsI WCGNNNNNNNCGW 3 cut(s) 296, 834, 1324
PdmI GAANNNNTTC 1 cut(s) 900
PfeI GAWTC 1 cut(s) 263
PkrI GCNGC 9 cut(s) 146, 151, 154, 294, 297, 306, 456, 559, 602
PleI GAGTC 1 cut(s) 123
PpsI GAGTC 1 cut(s) 123
PscI ACATGT 1 cut(s) 716
PshBI ATTAAT 1 cut(s) 972
PsiI TTATAA 1 cut(s) 413
Psp6I CCWGG 1 cut(s) 1248
PspEI GGTNACC 1 cut(s) 278
PspFI CCCAGC 2 cut(s) 274, 311
PspGI CCWGG 1 cut(s) 1248
PspN4I GGNNCC 1 cut(s) 804
PspPI GGNCC 1 cut(s) 170
PstNI CAGNNNCTG 1 cut(s) 1218
PsuI RGATCY 4 cut(s) 790, 802, 1078, 1366
RsaI GTAC 2 cut(s) 594, 1039
RsaNI GTAC 2 cut(s) 593, 1038
RseI CAYNNNNRTG 2 cut(s) 403, 729
SaqAI TTAA 3 cut(s) 488, 843, 972
SatI GCNGC 9 cut(s) 145, 150, 153, 293, 296, 305, 455, 558, 601
Sau3AI GATC 7 cut(s) 328, 379, 790, 802, 1078, 1245, 1366
Sau96I GGNCC 1 cut(s) 170
SchI GAGTC 1 cut(s) 123
ScrFI CCNGG 2 cut(s) 268, 1250
SduI GDGCHC 1 cut(s) 497
SfaNI GCATC 1 cut(s) 595
SfuI TTCGAA 2 cut(s) 1255, 1327
SmiMI CAYNNNNRTG 2 cut(s) 403, 729
SmlI CTYRAG 1 cut(s) 1169
SmoI CTYRAG 1 cut(s) 1169
Sse9I AATT 8 cut(s) 56, 89, 237, 363, 391, 929, 1203, 1345
SspI AATATT 1 cut(s) 865
SspMI CTAG 3 cut(s) 401, 1095, 1304
StyD4I CCNGG 2 cut(s) 266, 1248
TaaI ACNGT 3 cut(s) 1087, 1161, 1214
TaqI TCGA 6 cut(s) 371, 879, 976, 1255, 1318, 1327
TaqII GACCGA 1 cut(s) 851
TasI AATT 8 cut(s) 56, 89, 237, 363, 391, 929, 1203, 1345
TatI WGTACW 2 cut(s) 592, 1037
TauI GCSGC 5 cut(s) 152, 155, 295, 307, 603
TfiI GAWTC 1 cut(s) 263
Tru1I TTAA 3 cut(s) 488, 843, 972
Tru9I TTAA 3 cut(s) 488, 843, 972
TscAI CASTG 3 cut(s) 529, 1166, 1344
TseI GCWGC 4 cut(s) 144, 295, 454, 557
TspDTI ATGAA 2 cut(s) 459, 543
TspRI CASTG 3 cut(s) 529, 1166, 1344
VspI ATTAAT 1 cut(s) 972
XapI RAATTY 2 cut(s) 929, 1345
XceI RCATGY 2 cut(s) 720, 1385
XmnI GAANNNNTTC 1 cut(s) 900
XspI CTAG 3 cut(s) 401, 1095, 1304
Zsp2I ATGCAT 1 cut(s) 588
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.