Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0005107

Physical Location & Seq

Genomic Coordinates Forward (+)

37569027 .. 37575312

Gene Structure 6286 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG300400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGCTTTCTCAGTCTCCACAGCCACAGCCACAGCCACAGCCACTTCCAGTCCCCAATTCCATTTCTTCTCTTTTCACTCCAATCACCAATTCCCAGTCTCCCTCTCTCTCCCAACCCACACCGCCAGACTCGTCGTCTCCTGCTGCGCCGCCGCAAAGCCTCAGACCGGCCCTGTCAAGAAGAAGCGCTCTCCTCCCTCGCCCACCACCACCACCCCCGCCAACAACAAGGTTGAAATTGTGGATGATTTCGGGTCTTCAGATTCCGGGTCGCTGGGTTACCATCCTACGCCGCTGCCGAAGCCGCCCGCTGGGTTTGTAGTGGATGATCACGGCAGGGTGCTTATGGCTTCGTCCAAGCGAATTGCCTCGATTGTTGATCCTACCAATAATTTCCCACTAGAGTGTGTTATAAGGAGAGTGTTCAGAAGCTCACGAGGGGATGAATGTATGCTGCTTTGCCCTGTTGACACGCCTGTTCAGATATTAAAGAGCACCAATATAGATGGTTGGTCAGCGGTCAGTGATGAAGAAGTTGAGGCTATTCTTCCCTCTGCTGCTTATGCCCTTGCCAAGATACATATGCATCTTGTACATAGCGGCTTTTGTTATACAGCAAGGGGAGGGTTTTGTTACTCAGAAGATGACATATTTGATTTTCGCACAGATGATGGTGAAGATGTAGATGGCTTGCCAACTGAGGGTGTTGAGATTACATGTTTCCATTTGGTATGTGATAACCATCTATGTACAGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3727

Protein Analysis

252

Amino Acids

27.19

Weight (kDa)

5.59

Isoelectric Point (pI)

55.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF3727	PF12527	194 - 242	5.7e-06	Protein of unknown function (DUF3727)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005107)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33480
fragaria_vesca	FvH4_1g25120 FvH4_1g25120 FvH4_1g25120 FvH4_1g25120 FvH4_1g25120 FvH4_1g25120 FvH4_1g25120 FvH4_1g25120
malus_domestica	MD00G1064700.v1.1
prunus_persica	Prupe.4G278200_v2.0.a1 Prupe.4G278200_v2.0.a1 Prupe.4G278200_v2.0.a1
pyrus_communis	pycom520g00290
rosa_chinensis	RchiOBHm_Chr2g0122781
rosa_laevigata	RLG00000018711
rosa_multiflora	Rmu_sc0008259.1_g000002 Rmu_sc0019417.1_g000001 Rmu_sc0032021.1_g000001 Rmu_sc0039730.1_g000001
rosa_roxburghii	Rroxscaffold_2G00121230
rosa_rugosa	Rorug02G0242400 Rorug02G0242500.1
rosa_samantha	Rh2AG300400 Rh2BG308500 Rh2CG287300 Rh2DG324600
rosa_wichuraiana	Rw2G023880 Rw2G024090 Rw2G024120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	413
AciI	CCGC	9 cut(s)	123, 150, 153, 219, 293, 305, 309, 518, 600
AclWI	GGATC	1 cut(s)	374
AcuI	CTGAAG	1 cut(s)	243
AfaI	GTAC	2 cut(s)	594, 751
AfeI	AGCGCT	1 cut(s)	188
AfiI	CCNNNNNNNGG	3 cut(s)	167, 311, 701
AflIII	ACRYGT	1 cut(s)	716
AgsI	TTSAA	1 cut(s)	236
AhdI	GACNNNNNGTC	1 cut(s)	134
AjuI	GAANNNNNNNTTGG	2 cut(s)	74, 106
AleI	CACNNNNGTG	1 cut(s)	403
AluBI	AGCT	1 cut(s)	432
AluI	AGCT	1 cut(s)	432
Alw21I	GWGCWC	1 cut(s)	497
Alw26I	GTCTC	3 cut(s)	19, 103, 142
AlwI	GGATC	1 cut(s)	374
Aor51HI	AGCGCT	1 cut(s)	188
AoxI	GGCC	1 cut(s)	169
ApeKI	GCWGC	4 cut(s)	144, 295, 454, 557
AspLEI	GCGC	2 cut(s)	149, 189
AspS9I	GGNCC	1 cut(s)	170
AsuC2I	CCSGG	1 cut(s)	268
AsuHPI	GGTGA	2 cut(s)	77, 686
BauI	CACGAG	1 cut(s)	435
BbsI	GAAGAC	1 cut(s)	249
Bbv12I	GWGCWC	1 cut(s)	497
BbvI	GCAGC	4 cut(s)	131, 282, 441, 544
BccI	CCATC	5 cut(s)	291, 500, 665, 680, 750
BceAI	ACGGC	1 cut(s)	349
BclI	TGATCA	1 cut(s)	328
BcnI	CCSGG	1 cut(s)	268
BcoDI	GTCTC	3 cut(s)	19, 103, 142
BfaI	CTAG	1 cut(s)	401
BfoI	RGCGCY	1 cut(s)	190
BisI	GCNGC	9 cut(s)	145, 150, 153, 293, 296, 305, 455, 558, 601
BlsI	GCNGC	9 cut(s)	146, 151, 154, 294, 297, 306, 456, 559, 602
Bme1390I	CCNGG	1 cut(s)	268
BmeRI	GACNNNNNGTC	1 cut(s)	134
BmgT120I	GGNCC	1 cut(s)	170
BmrFI	CCNGG	1 cut(s)	268
BmrI	ACTGGG	1 cut(s)	89
BmsI	GCATC	1 cut(s)	595
BmuI	ACTGGG	1 cut(s)	89
BpiI	GAAGAC	1 cut(s)	249
BpuMI	CCSGG	1 cut(s)	268
BsaBI	GATNNNNATC	1 cut(s)	741
Bsc4I	CCNNNNNNNGG	3 cut(s)	167, 311, 701
Bse118I	RCCGGY	1 cut(s)	167
Bse1I	ACTGG	2 cut(s)	48, 95
Bse8I	GATNNNNATC	1 cut(s)	741
BseGI	GGATG	4 cut(s)	250, 283, 331, 448
BseJI	GATNNNNATC	1 cut(s)	741
BseLI	CCNNNNNNNGG	3 cut(s)	167, 311, 701
BseMII	CTCAG	4 cut(s)	24, 176, 651, 690
BseNI	ACTGG	2 cut(s)	48, 95
BseRI	GAGGAG	1 cut(s)	183
BseXI	GCAGC	4 cut(s)	131, 282, 441, 544
BseYI	CCCAGC	2 cut(s)	274, 311
BshFI	GGCC	1 cut(s)	171
BsiHKAI	GWGCWC	1 cut(s)	497
BsiSI	CCGG	2 cut(s)	168, 267
BslFI	GGGAC	1 cut(s)	36
BslI	CCNNNNNNNGG	3 cut(s)	167, 311, 701
BsmAI	GTCTC	3 cut(s)	19, 103, 142
BsmBI	CGTCTC	1 cut(s)	142
BsmFI	GGGAC	1 cut(s)	36
BsnI	GGCC	1 cut(s)	171
Bsp1286I	GDGCHC	1 cut(s)	497
Bsp1407I	TGTACA	2 cut(s)	592, 749
Bsp143I	GATC	2 cut(s)	328, 379
BspACI	CCGC	9 cut(s)	123, 150, 153, 219, 293, 305, 309, 518, 600
BspANI	GGCC	1 cut(s)	171
BspCNI	CTCAG	4 cut(s)	23, 175, 650, 691
BspPI	GGATC	1 cut(s)	374
BsrFI	RCCGGY	1 cut(s)	167
BsrGI	TGTACA	2 cut(s)	592, 749
BsrI	ACTGG	2 cut(s)	48, 95
BssAI	RCCGGY	1 cut(s)	167
BssMI	GATC	2 cut(s)	328, 379
BssSI	CACGAG	1 cut(s)	435
Bst2BI	CACGAG	1 cut(s)	435
Bst4CI	ACNGT	1 cut(s)	754
BstAUI	TGTACA	2 cut(s)	592, 749
BstC8I	GCNNGC	2 cut(s)	309, 692
BstDEI	CTNAG	4 cut(s)	10, 162, 637, 699
BstEII	GGTNACC	1 cut(s)	278
BstF5I	GGATG	4 cut(s)	250, 283, 331, 448
BstH2I	RGCGCY	1 cut(s)	190
BstHHI	GCGC	2 cut(s)	149, 189
BstKTI	GATC	2 cut(s)	331, 382
BstMAI	GTCTC	3 cut(s)	19, 103, 142
BstMBI	GATC	2 cut(s)	328, 379
BstMWI	GCNNNNNNNGC	3 cut(s)	301, 304, 563
BstNSI	RCATGY	1 cut(s)	720
BstPI	GGTNACC	1 cut(s)	278
BstSCI	CCNGG	1 cut(s)	266
BstV1I	GCAGC	4 cut(s)	131, 282, 441, 544
BstV2I	GAAGAC	1 cut(s)	249
BsuRI	GGCC	1 cut(s)	171
BtsCI	GGATG	4 cut(s)	250, 283, 331, 448
BtsIMutI	CAGTG	1 cut(s)	529
Cac8I	GCNNGC	2 cut(s)	309, 692
CfoI	GCGC	2 cut(s)	149, 189
Cfr10I	RCCGGY	1 cut(s)	167
Cfr13I	GGNCC	1 cut(s)	170
Csp6I	GTAC	2 cut(s)	593, 750
CviAII	CATG	1 cut(s)	717
CviQI	GTAC	2 cut(s)	593, 750
DdeI	CTNAG	4 cut(s)	10, 162, 637, 699
DpnI	GATC	2 cut(s)	330, 381
DpnII	GATC	2 cut(s)	328, 379
DriI	GACNNNNNGTC	1 cut(s)	134
Eam1105I	GACNNNNNGTC	1 cut(s)	134
Eco47III	AGCGCT	1 cut(s)	188
Eco57I	CTGAAG	1 cut(s)	243
Eco91I	GGTNACC	1 cut(s)	278
EcoO65I	GGTNACC	1 cut(s)	278
EcoT22I	ATGCAT	1 cut(s)	588
Esp3I	CGTCTC	1 cut(s)	142
FaeI	CATG	1 cut(s)	720
FaqI	GGGAC	1 cut(s)	36
FatI	CATG	1 cut(s)	716
FauI	CCCGC	2 cut(s)	226, 316
FauNDI	CATATG	1 cut(s)	582
FbaI	TGATCA	1 cut(s)	328
Fnu4HI	GCNGC	9 cut(s)	145, 150, 153, 293, 296, 305, 455, 558, 601
FokI	GGATG	4 cut(s)	257, 270, 338, 455
Fsp4HI	GCNGC	9 cut(s)	145, 150, 153, 293, 296, 305, 455, 558, 601
FspBI	CTAG	1 cut(s)	401
GlaI	GCGC	2 cut(s)	148, 188
GluI	GCNGC	9 cut(s)	145, 150, 153, 293, 296, 305, 455, 558, 601
GsaI	CCCAGC	2 cut(s)	278, 315
HaeII	RGCGCY	1 cut(s)	190
HaeIII	GGCC	1 cut(s)	171
HapII	CCGG	2 cut(s)	168, 267
HhaI	GCGC	2 cut(s)	149, 189
Hin1II	CATG	1 cut(s)	720
Hin6I	GCGC	2 cut(s)	147, 187
HinP1I	GCGC	2 cut(s)	147, 187
HincII	GTYRAC	1 cut(s)	469
HindII	GTYRAC	1 cut(s)	469
HinfI	GANTC	2 cut(s)	129, 263
HpaII	CCGG	2 cut(s)	168, 267
HphI	GGTGA	2 cut(s)	77, 686
Hpy166II	GTNNAC	1 cut(s)	469
Hpy188I	TCNGA	5 cut(s)	165, 262, 428, 483, 640
Hpy188III	TCNNGA	2 cut(s)	178, 435
Hpy8I	GTNNAC	1 cut(s)	469
Hpy99I	CGWCG	1 cut(s)	137
HpyCH4III	ACNGT	1 cut(s)	754
HpyCH4V	TGCA	1 cut(s)	586
HpyF10VI	GCNNNNNNNGC	3 cut(s)	301, 304, 563
HpyF3I	CTNAG	4 cut(s)	10, 162, 637, 699
Hsp92II	CATG	1 cut(s)	720
HspAI	GCGC	2 cut(s)	147, 187
Ksp22I	TGATCA	1 cut(s)	328
Kzo9I	GATC	2 cut(s)	328, 379
Lsp1109I	GCAGC	4 cut(s)	131, 282, 441, 544
LweI	GCATC	1 cut(s)	595
MaeI	CTAG	1 cut(s)	401
MaeIII	GTNAC	2 cut(s)	278, 632
MalI	GATC	2 cut(s)	330, 381
MboI	GATC	2 cut(s)	328, 379
MboII	GAAGA	7 cut(s)	58, 193, 249, 539, 542, 653, 689
MhlI	GDGCHC	1 cut(s)	497
MluCI	AATT	5 cut(s)	56, 89, 237, 363, 391
MlyI	GAGTC	1 cut(s)	123
Mph1103I	ATGCAT	1 cut(s)	588
MseI	TTAA	1 cut(s)	488
MslI	CAYNNNNRTG	1 cut(s)	403
MspA1I	CMGCKG	3 cut(s)	295, 311, 518
MspI	CCGG	2 cut(s)	168, 267
MspR9I	CCNGG	1 cut(s)	268
MwoI	GCNNNNNNNGC	3 cut(s)	301, 304, 563
NciI	CCSGG	1 cut(s)	268
NdeI	CATATG	1 cut(s)	582
NdeII	GATC	2 cut(s)	328, 379
NlaIII	CATG	1 cut(s)	720
NsiI	ATGCAT	1 cut(s)	588
NspI	RCATGY	1 cut(s)	720
OliI	CACNNNNGTG	1 cut(s)	403
PciI	ACATGT	1 cut(s)	716
PcsI	WCGNNNNNNNCGW	1 cut(s)	296
PfeI	GAWTC	1 cut(s)	263
PkrI	GCNGC	9 cut(s)	146, 151, 154, 294, 297, 306, 456, 559, 602
PleI	GAGTC	1 cut(s)	123
PpsI	GAGTC	1 cut(s)	123
PscI	ACATGT	1 cut(s)	716
PsiI	TTATAA	1 cut(s)	413
PspEI	GGTNACC	1 cut(s)	278
PspFI	CCCAGC	2 cut(s)	274, 311
PspPI	GGNCC	1 cut(s)	170
RsaI	GTAC	2 cut(s)	594, 751
RsaNI	GTAC	2 cut(s)	593, 750
RseI	CAYNNNNRTG	1 cut(s)	403
SaqAI	TTAA	1 cut(s)	488
SatI	GCNGC	9 cut(s)	145, 150, 153, 293, 296, 305, 455, 558, 601
Sau3AI	GATC	2 cut(s)	328, 379
Sau96I	GGNCC	1 cut(s)	170
SchI	GAGTC	1 cut(s)	123
ScrFI	CCNGG	1 cut(s)	268
SduI	GDGCHC	1 cut(s)	497
SetI	ASST	2 cut(s)	234, 434
SfaNI	GCATC	1 cut(s)	595
SmiMI	CAYNNNNRTG	1 cut(s)	403
Sse9I	AATT	5 cut(s)	56, 89, 237, 363, 391
SsiI	CCGC	9 cut(s)	123, 150, 153, 219, 293, 305, 309, 518, 600
SspMI	CTAG	1 cut(s)	401
StyD4I	CCNGG	1 cut(s)	266
TaaI	ACNGT	1 cut(s)	754
TaqI	TCGA	1 cut(s)	371
TasI	AATT	5 cut(s)	56, 89, 237, 363, 391
TatI	WGTACW	2 cut(s)	592, 749
TauI	GCSGC	5 cut(s)	152, 155, 295, 307, 603
TfiI	GAWTC	1 cut(s)	263
Tru1I	TTAA	1 cut(s)	488
Tru9I	TTAA	1 cut(s)	488
TscAI	CASTG	1 cut(s)	529
TseI	GCWGC	4 cut(s)	144, 295, 454, 557
TspDTI	ATGAA	2 cut(s)	459, 543
TspRI	CASTG	1 cut(s)	529
XceI	RCATGY	1 cut(s)	720
XspI	CTAG	1 cut(s)	401
Zsp2I	ATGCAT	1 cut(s)	588

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.