Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0005107

Physical Location & Seq

Genomic Coordinates Reverse (-)

24890610 .. 24892594

Gene Structure 1985 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0242400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1347 bp

ATGGCTCCACTCATGTACTTCAAGTTCAGAAAGGTACTTTTGCTAGTTTCTCTTGTTGTGTTCCTCTTTTCTTCTACTCTGCTCCTTTGTGCCGCAGAAGAAGATGAGAAACTGCCTCGAATTCAGAGCGCATCGCAGTTTTTGGCTTCAAGGAAAATGTTGGAATTAGATGAAGAAGTCCAGCCTAAGAAGATCAAGACCAAAGCCACCACCTCAACTCCCCAATCCTCCAAAAACCAAACCAAGCTTATCAAACCCACTTCATCATCCTCCAAAAACCAAACCAAGCTGCTCAAGCCACTTAAACCCAACCTATCATCCAAGAACCAAACCAAGCTCATCAAACCAAGCACCAATTCAACCAAGTCGTCATCATCATCATCATCACCACCTAGTATCAAGATTGGCCTCAAGAAGCTCAATTCCACTTCCAAACCCTCAAACTCCACCAAACCCACTTCACTATCATCCAAGAAGACCTCAGATCTAGCCAAACTAACCTCCCCCAAGAACAAAACAACCAAACCCACCACCACAAAACAACCTCAAACTCCCAAACCAATCCAAAAAACACAGAAAACCCCCACCCCACAAAAACCCACCAAGAAACCAGTCCAACCCAGCTGGATCGAACAAGAAGACGACACCGACTTCGTCTCCGACTTCACAGACTTACCCGTTCAATTCCAACAGACTCTGATCCCAGACCTGGAAAAAATCTCAACCACATCAAAAATCTACCTCACCCAAGCCAACAAGCAAATGACCACCAGGTTCAAACCACTCGTCGGAAACAAATACGCCCCCACCATCGCTTCCATAGTCTCCTGCGCATTCCTACTTATTCCATTGCTCCTAGTCTCTCTCCTCTTCAACCGAATCAAAGCCTACTTTTCCCTCCAAAAGCTCCTCATCTTCATCCAAGTCTACCTCTCCATCTACTTCTCAATCCTCTGCCTCTCTTCCTTGGTCACTGGCCTCGAGCCCCTCAAGTTCTTCTACGCTACTTCGCAGTCCACCTACATCTGCCTCCAGGTTCTGCAGACTCTCGGCTACGTGCTCTATCTCCTCCTCCTCATCATGTACTTGATCCTGGTTTTCTCGACCGACTCCGGGCTGGGCTCGAAGATGTTGGGCCTGGCCCAGACTTTTCTCGGGTTCGCGGTTGGGCTGCATTACTACATGTCGGTGTTTCACAGGGCGTTGCTGCGGCAGCCGCCGAAGACTAATTGGAAGGTGCACGGGATATACGCCATGTGTTACCTTGTGATTTGTCTGTTTGCCACGGCGGAGAGGAGGAAGAAGGCTTACTTGGAAGAAGGTGGTGAAGAGGGCAAGAAGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3727

Protein Analysis

448

Amino Acids

50.15

Weight (kDa)

9.89

Isoelectric Point (pI)

43.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005107)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33480
fragaria_vesca	FvH4_1g25120 FvH4_1g25120 FvH4_1g25120 FvH4_1g25120 FvH4_1g25120 FvH4_1g25120 FvH4_1g25120 FvH4_1g25120
malus_domestica	MD00G1064700.v1.1
prunus_persica	Prupe.4G278200_v2.0.a1 Prupe.4G278200_v2.0.a1 Prupe.4G278200_v2.0.a1
pyrus_communis	pycom520g00290
rosa_chinensis	RchiOBHm_Chr2g0122781
rosa_laevigata	RLG00000018711
rosa_multiflora	Rmu_sc0008259.1_g000002 Rmu_sc0019417.1_g000001 Rmu_sc0032021.1_g000001 Rmu_sc0039730.1_g000001
rosa_roxburghii	Rroxscaffold_2G00121230
rosa_rugosa	Rorug02G0242400 Rorug02G0242500.1
rosa_samantha	Rh2AG300400 Rh2BG308500 Rh2CG287300 Rh2DG324600
rosa_wichuraiana	Rw2G023880 Rw2G024090 Rw2G024120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	832
AccI	GTMKAC	1 cut(s)	927
AccII	CGCG	1 cut(s)	1163
AciI	CCGC	5 cut(s)	93, 1163, 1210, 1217, 1289
AclWI	GGATC	3 cut(s)	635, 694, 1084
AcsI	RAATTY	1 cut(s)	120
AfaI	GTAC	3 cut(s)	17, 36, 1085
AfiI	CCNNNNNNNGG	3 cut(s)	709, 788, 1113
AflIII	ACRYGT	1 cut(s)	1182
AgsI	TTSAA	6 cut(s)	22, 150, 360, 683, 778, 874
AjnI	CCWGG	5 cut(s)	708, 770, 1032, 1092, 1137
AjuI	GAANNNNNNNTTGG	4 cut(s)	340, 372, 1295, 1327
AluBI	AGCT	6 cut(s)	247, 289, 337, 418, 624, 907
AluI	AGCT	6 cut(s)	247, 289, 337, 418, 624, 907
Alw21I	GWGCWC	2 cut(s)	1062, 1242
Alw26I	GTCTC	3 cut(s)	661, 829, 865
Alw44I	GTGCAC	1 cut(s)	1238
AlwI	GGATC	3 cut(s)	635, 694, 1084
AlwNI	CAGNNNCTG	2 cut(s)	697, 1039
Ama87I	CYCGRG	2 cut(s)	980, 1154
AoxI	GGCC	4 cut(s)	406, 976, 1135, 1140
ApaLI	GTGCAC	1 cut(s)	1238
ApeKI	GCWGC	4 cut(s)	289, 1171, 1207, 1213
ApoI	RAATTY	1 cut(s)	120
ArsI	GACNNNNNNTTYG	4 cut(s)	635, 667, 771, 803
AspLEI	GCGC	2 cut(s)	131, 833
AspS9I	GGNCC	2 cut(s)	1135, 1141
AsuC2I	CCSGG	1 cut(s)	1114
AsuHPI	GGTGA	3 cut(s)	378, 736, 1337
AvaI	CYCGRG	2 cut(s)	980, 1154
BaeGI	GKGCMC	1 cut(s)	1242
BanII	GRGCYC	2 cut(s)	987, 1124
BarI	GAAGNNNNNNTAC	2 cut(s)	1292, 1324
BbsI	GAAGAC	3 cut(s)	482, 645, 1229
Bbv12I	GWGCWC	2 cut(s)	1062, 1242
BbvI	GCAGC	4 cut(s)	276, 1158, 1194, 1225
BccI	CCATC	2 cut(s)	818, 944
BceAI	ACGGC	1 cut(s)	1302
BciT130I	CCWGG	5 cut(s)	710, 772, 1034, 1094, 1139
BcnI	CCSGG	1 cut(s)	1114
BcoDI	GTCTC	3 cut(s)	661, 829, 865
BfaI	CTAG	4 cut(s)	44, 393, 488, 857
BfmI	CTRYAG	1 cut(s)	1040
BglII	AGATCT	1 cut(s)	484
BisI	GCNGC	7 cut(s)	93, 290, 1172, 1208, 1211, 1214, 1217
BlsI	GCNGC	7 cut(s)	94, 291, 1173, 1209, 1212, 1215, 1218
Bme1390I	CCNGG	6 cut(s)	710, 772, 1034, 1094, 1114, 1139
BmeT110I	CYCGRG	2 cut(s)	980, 1154
BmgT120I	GGNCC	2 cut(s)	1135, 1141
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	6 cut(s)	710, 772, 1034, 1094, 1114, 1139
BmsI	GCATC	1 cut(s)	140
BpiI	GAAGAC	3 cut(s)	482, 645, 1229
BpmI	CTGGAG	1 cut(s)	1016
BpuEI	CTTGAG	3 cut(s)	278, 395, 974
BpuMI	CCSGG	1 cut(s)	1114
BsaAI	YACGTR	1 cut(s)	1057
BsaJI	CCNNGG	2 cut(s)	966, 1284
BsaXI	ACNNNNNCTCC	4 cut(s)	202, 232, 641, 671
Bsc4I	CCNNNNNNNGG	3 cut(s)	709, 788, 1113
Bse1I	ACTGG	2 cut(s)	611, 979
Bse3DI	GCAATG	1 cut(s)	848
BseBI	CCWGG	5 cut(s)	710, 772, 1034, 1094, 1139
BseDI	CCNNGG	2 cut(s)	966, 1284
BseGI	GGATG	4 cut(s)	266, 317, 467, 918
BseLI	CCNNNNNNNGG	3 cut(s)	709, 788, 1113
BseMI	GCAATG	1 cut(s)	848
BseMII	CTCAG	1 cut(s)	495
BseNI	ACTGG	2 cut(s)	611, 979
BseRI	GAGGAG	6 cut(s)	857, 899, 1058, 1061, 1064, 1309
BseSI	GKGCMC	1 cut(s)	1242
BseXI	GCAGC	4 cut(s)	276, 1158, 1194, 1225
BseYI	CCCAGC	2 cut(s)	620, 1117
Bsh1236I	CGCG	1 cut(s)	1163
Bsh1285I	CGRYCG	1 cut(s)	1107
BshFI	GGCC	4 cut(s)	408, 978, 1137, 1142
BsiEI	CGRYCG	1 cut(s)	1107
BsiHKAI	GWGCWC	2 cut(s)	1062, 1242
BsiHKCI	CYCGRG	2 cut(s)	980, 1154
BsiSI	CCGG	1 cut(s)	1113
BslI	CCNNNNNNNGG	3 cut(s)	709, 788, 1113
BsmAI	GTCTC	3 cut(s)	661, 829, 865
BsmBI	CGTCTC	1 cut(s)	661
BsmI	GAATGC	1 cut(s)	833
BsnI	GGCC	4 cut(s)	408, 978, 1137, 1142
BsoBI	CYCGRG	2 cut(s)	980, 1154
Bsp1286I	GDGCHC	4 cut(s)	987, 1062, 1124, 1242
Bsp143I	GATC	5 cut(s)	192, 484, 627, 699, 1089
BspACI	CCGC	5 cut(s)	93, 1163, 1210, 1217, 1289
BspANI	GGCC	4 cut(s)	408, 978, 1137, 1142
BspCNI	CTCAG	1 cut(s)	494
BspFNI	CGCG	1 cut(s)	1163
BspLI	GGNNCC	1 cut(s)	6
BspMAI	CTGCAG	1 cut(s)	1044
BspPI	GGATC	3 cut(s)	635, 694, 1084
BsrDI	GCAATG	1 cut(s)	848
BsrI	ACTGG	2 cut(s)	611, 979
BssECI	CCNNGG	2 cut(s)	966, 1284
BssMI	GATC	5 cut(s)	192, 484, 627, 699, 1089
BssT1I	CCWWGG	1 cut(s)	966
Bst2UI	CCWGG	5 cut(s)	710, 772, 1034, 1094, 1139
Bst6I	CTCTTC	3 cut(s)	875, 967, 1323
BstBAI	YACGTR	1 cut(s)	1057
BstDEI	CTNAG	2 cut(s)	186, 481
BstDSI	CCRYGG	1 cut(s)	1284
BstF5I	GGATG	4 cut(s)	266, 317, 467, 918
BstFNI	CGCG	1 cut(s)	1163
BstHHI	GCGC	2 cut(s)	131, 833
BstKTI	GATC	5 cut(s)	195, 487, 630, 702, 1092
BstMAI	GTCTC	3 cut(s)	661, 829, 865
BstMBI	GATC	5 cut(s)	192, 484, 627, 699, 1089
BstMCI	CGRYCG	1 cut(s)	1107
BstMWI	GCNNNNNNNGC	3 cut(s)	295, 1213, 1216
BstNI	CCWGG	5 cut(s)	710, 772, 1034, 1094, 1139
BstNSI	RCATGY	1 cut(s)	1186
BstSCI	CCNGG	6 cut(s)	708, 770, 1032, 1092, 1112, 1137
BstSFI	CTRYAG	1 cut(s)	1040
BstSLI	GKGCMC	1 cut(s)	1242
BstUI	CGCG	1 cut(s)	1163
BstV1I	GCAGC	4 cut(s)	276, 1158, 1194, 1225
BstV2I	GAAGAC	3 cut(s)	482, 645, 1229
BstX2I	RGATCY	1 cut(s)	484
BstYI	RGATCY	1 cut(s)	484
BsuRI	GGCC	4 cut(s)	408, 978, 1137, 1142
BtgI	CCRYGG	1 cut(s)	1284
BtgZI	GCGATG	2 cut(s)	117, 796
BtsCI	GGATG	4 cut(s)	266, 317, 467, 918
BtsIMutI	CAGTG	1 cut(s)	972
CaiI	CAGNNNCTG	2 cut(s)	697, 1039
CfoI	GCGC	2 cut(s)	131, 833
Cfr13I	GGNCC	2 cut(s)	1135, 1141
CsiI	ACCWGGT	1 cut(s)	770
Csp6I	GTAC	3 cut(s)	16, 35, 1084
CviAII	CATG	4 cut(s)	13, 1081, 1183, 1255
CviQI	GTAC	3 cut(s)	16, 35, 1084
DdeI	CTNAG	2 cut(s)	186, 481
DpnI	GATC	5 cut(s)	194, 486, 629, 701, 1091
DpnII	GATC	5 cut(s)	192, 484, 627, 699, 1089
Eam1104I	CTCTTC	3 cut(s)	875, 967, 1323
EarI	CTCTTC	3 cut(s)	875, 967, 1323
EciI	GGCGGA	1 cut(s)	1304
Eco130I	CCWWGG	1 cut(s)	966
Eco24I	GRGCYC	2 cut(s)	987, 1124
Eco88I	CYCGRG	2 cut(s)	980, 1154
EcoRI	GAATTC	1 cut(s)	120
EcoRII	CCWGG	5 cut(s)	708, 770, 1032, 1092, 1137
EcoT14I	CCWWGG	1 cut(s)	966
EcoT38I	GRGCYC	2 cut(s)	987, 1124
ErhI	CCWWGG	1 cut(s)	966
Esp3I	CGTCTC	1 cut(s)	661
FaeI	CATG	4 cut(s)	16, 1084, 1186, 1258
FaiI	YATR	6 cut(s)	14, 821, 1082, 1184, 1249, 1256
FalI	AAGNNNNNCTT	2 cut(s)	1295, 1327
FatI	CATG	4 cut(s)	12, 1080, 1182, 1254
FblI	GTMKAC	1 cut(s)	927
Fnu4HI	GCNGC	7 cut(s)	93, 290, 1172, 1208, 1211, 1214, 1217
FokI	GGATG	4 cut(s)	253, 304, 454, 905
FriOI	GRGCYC	2 cut(s)	987, 1124
Fsp4HI	GCNGC	7 cut(s)	93, 290, 1172, 1208, 1211, 1214, 1217
FspBI	CTAG	4 cut(s)	44, 393, 488, 857
FspI	TGCGCA	1 cut(s)	832
GlaI	GCGC	2 cut(s)	130, 832
GluI	GCNGC	7 cut(s)	93, 290, 1172, 1208, 1211, 1214, 1217
GsaI	CCCAGC	2 cut(s)	624, 1121
GsuI	CTGGAG	1 cut(s)	1016
HaeIII	GGCC	4 cut(s)	408, 978, 1137, 1142
HapII	CCGG	1 cut(s)	1113
HhaI	GCGC	2 cut(s)	131, 833
Hin1II	CATG	4 cut(s)	16, 1084, 1186, 1258
Hin6I	GCGC	2 cut(s)	129, 831
HinP1I	GCGC	2 cut(s)	129, 831
HindIII	AAGCTT	1 cut(s)	245
HinfI	GANTC	4 cut(s)	694, 879, 1045, 1109
HpaII	CCGG	1 cut(s)	1113
HphI	GGTGA	3 cut(s)	378, 736, 1337
Hpy166II	GTNNAC	3 cut(s)	928, 1017, 1240
Hpy188I	TCNGA	6 cut(s)	29, 126, 484, 661, 699, 791
Hpy188III	TCNNGA	4 cut(s)	196, 400, 412, 1102
Hpy8I	GTNNAC	3 cut(s)	928, 1017, 1240
Hpy99I	CGWCG	1 cut(s)	791
HpyAV	CCTTC	3 cut(s)	1228, 1297, 1313
HpyCH4IV	ACGT	1 cut(s)	1056
HpyCH4V	TGCA	3 cut(s)	1042, 1174, 1240
HpyF10VI	GCNNNNNNNGC	3 cut(s)	295, 1213, 1216
HpyF3I	CTNAG	2 cut(s)	186, 481
HpySE526I	ACGT	1 cut(s)	1056
Hsp92II	CATG	4 cut(s)	16, 1084, 1186, 1258
HspAI	GCGC	2 cut(s)	129, 831
Kzo9I	GATC	5 cut(s)	192, 484, 627, 699, 1089
LmnI	GCTCC	4 cut(s)	10, 87, 858, 912
Lsp1109I	GCAGC	4 cut(s)	276, 1158, 1194, 1225
LweI	GCATC	1 cut(s)	140
MabI	ACCWGGT	1 cut(s)	770
MaeI	CTAG	4 cut(s)	44, 393, 488, 857
MaeII	ACGT	1 cut(s)	1056
MaeIII	GTNAC	2 cut(s)	970, 1259
MalI	GATC	5 cut(s)	194, 486, 629, 701, 1091
MboI	GATC	5 cut(s)	192, 484, 627, 699, 1089
MflI	RGATCY	1 cut(s)	484
MhlI	GDGCHC	4 cut(s)	987, 1062, 1124, 1242
MluCI	AATT	6 cut(s)	120, 164, 355, 421, 683, 1228
MlyI	GAGTC	3 cut(s)	688, 1039, 1103
MmeI	TCCRAC	5 cut(s)	141, 640, 684, 712, 769
MseI	TTAA	1 cut(s)	303
MslI	CAYNNNNRTG	1 cut(s)	1187
MspA1I	CMGCKG	1 cut(s)	624
MspI	CCGG	1 cut(s)	1113
MspR9I	CCNGG	6 cut(s)	710, 772, 1034, 1094, 1114, 1139
Mva1269I	GAATGC	1 cut(s)	833
MvaI	CCWGG	5 cut(s)	710, 772, 1034, 1094, 1139
MvnI	CGCG	1 cut(s)	1163
MwoI	GCNNNNNNNGC	3 cut(s)	295, 1213, 1216
NciI	CCSGG	1 cut(s)	1114
NdeII	GATC	5 cut(s)	192, 484, 627, 699, 1089
NlaIII	CATG	4 cut(s)	16, 1084, 1186, 1258
NlaIV	GGNNCC	1 cut(s)	6
NmeAIII	GCCGAG	1 cut(s)	1029
NmuCI	GTSAC	1 cut(s)	970
NsbI	TGCGCA	1 cut(s)	832
NspI	RCATGY	1 cut(s)	1186
PaeR7I	CTCGAG	1 cut(s)	980
PciI	ACATGT	1 cut(s)	1182
PctI	GAATGC	1 cut(s)	833
PfeI	GAWTC	1 cut(s)	879
PflFI	GACNNNGTC	1 cut(s)	653
PkrI	GCNGC	7 cut(s)	94, 291, 1173, 1209, 1212, 1215, 1218
PleI	GAGTC	3 cut(s)	688, 1039, 1103
PpsI	GAGTC	3 cut(s)	688, 1039, 1103
Ppu21I	YACGTR	1 cut(s)	1057
PscI	ACATGT	1 cut(s)	1182
Psp6I	CCWGG	5 cut(s)	708, 770, 1032, 1092, 1137
PspFI	CCCAGC	2 cut(s)	620, 1117
PspGI	CCWGG	5 cut(s)	708, 770, 1032, 1092, 1137
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	2 cut(s)	1135, 1141
PspXI	VCTCGAGB	1 cut(s)	980
PsrI	GAACNNNNNNTAC	2 cut(s)	8, 40
PstI	CTGCAG	1 cut(s)	1044
PstNI	CAGNNNCTG	2 cut(s)	697, 1039
PsuI	RGATCY	1 cut(s)	484
PsyI	GACNNNGTC	1 cut(s)	653
PvuII	CAGCTG	1 cut(s)	624
RsaI	GTAC	3 cut(s)	17, 36, 1085
RsaNI	GTAC	3 cut(s)	16, 35, 1084
RseI	CAYNNNNRTG	1 cut(s)	1187
SaqAI	TTAA	1 cut(s)	303
SatI	GCNGC	7 cut(s)	93, 290, 1172, 1208, 1211, 1214, 1217
Sau3AI	GATC	5 cut(s)	192, 484, 627, 699, 1089
Sau96I	GGNCC	2 cut(s)	1135, 1141
SchI	GAGTC	3 cut(s)	688, 1039, 1103
ScrFI	CCNGG	6 cut(s)	710, 772, 1034, 1094, 1114, 1139
SduI	GDGCHC	4 cut(s)	987, 1062, 1124, 1242
SexAI	ACCWGGT	1 cut(s)	770
SfaNI	GCATC	1 cut(s)	140
SfcI	CTRYAG	1 cut(s)	1040
Sfr274I	CTCGAG	1 cut(s)	980
SlaI	CTCGAG	1 cut(s)	980
SmiMI	CAYNNNNRTG	1 cut(s)	1187
SmlI	CTYRAG	4 cut(s)	293, 410, 980, 989
SmoI	CTYRAG	4 cut(s)	293, 410, 980, 989
Sse9I	AATT	6 cut(s)	120, 164, 355, 421, 683, 1228
SsiI	CCGC	5 cut(s)	93, 1163, 1210, 1217, 1289
SspMI	CTAG	4 cut(s)	44, 393, 488, 857
StyD4I	CCNGG	6 cut(s)	708, 770, 1032, 1092, 1112, 1137
StyI	CCWWGG	1 cut(s)	966
TaiI	ACGT	1 cut(s)	1059
TaqI	TCGA	5 cut(s)	118, 630, 981, 1103, 1124
TaqII	GACCGA	1 cut(s)	1121
TasI	AATT	6 cut(s)	120, 164, 355, 421, 683, 1228
TatI	WGTACW	2 cut(s)	15, 1083
TauI	GCSGC	3 cut(s)	95, 1213, 1219
TfiI	GAWTC	1 cut(s)	879
Tru1I	TTAA	1 cut(s)	303
Tru9I	TTAA	1 cut(s)	303
TscAI	CASTG	1 cut(s)	979
TseFI	GTSAC	1 cut(s)	970
TseI	GCWGC	4 cut(s)	289, 1171, 1207, 1213
Tsp45I	GTSAC	1 cut(s)	970
TspDTI	ATGAA	3 cut(s)	186, 252, 907
TspRI	CASTG	1 cut(s)	979
Tth111I	GACNNNGTC	1 cut(s)	653
VneI	GTGCAC	1 cut(s)	1238
XapI	RAATTY	1 cut(s)	120
XceI	RCATGY	1 cut(s)	1186
XhoI	CTCGAG	1 cut(s)	980
XmiI	GTMKAC	1 cut(s)	927
XspI	CTAG	4 cut(s)	44, 393, 488, 857

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.