RchiOBHm_Chr2g0122781

Protein of unknown function (DUF3727)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0005107
Physical Location & Seq
Reverse (-)
35800667 .. 35811460
10794 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ49515

Sequence Viewer

Length: 981 bp
ATGGCTTTCTCAGTCTCCACAGCCACAGCCAGTTCCAGTCCCCAATTCCATTTCTTCTCTTTTCACTCCAATCACCAATTCCCAGTCTCCCTCTCTCTCCCAACCCACACCGCCAGACTCCTCGTCTCCTGCTGCGCCGCCGCAAAGCCTCAGACCGGCCCCGTCAAGAAGAAACGCTCTCCTTCCTCGCCCTCCACCACCACCACCACCACCCCCACCAACAACAACAACAGCAAGAAAAAGCGTAAGGCCAAGGATAATAATACCAGCTTTAGCAAGGTTGAAATTGTGGATGATTTCGGGTCTTCAGATTCCGGGTCGCTGGGTTACCATCCTACGCCGCTGCCGAAGCCGCCCGCTGGGTTTGTAGTGGATGATCACGGCAGGGTTCTTATGGCTTCGTCCAAGCGAATTGCCTCGATTGTTGATCCTACCAATAATTTCCCATTAGAGTGCGTTATAAGGAGAGTGTTCAGAAGCTCACGAGGGGATGAATGTATGCTGCTTTGCCCTGTTGACACGCCTGTTCAGATATTAAAGAGCACCAATATAGATGGTTGGTCAGCGGTCAGTGATGAAGAAGTTGAAGCTATTCTTCCTTCTGCTGCTTATGCCCTTGCCAAGATACATATGCATCTTGTACATAGCGGATTTTGCTATACAGCAAGGGGAGGATTTTGTTACTCAGAAGATGACATATTTGATTTTCGCACAGATGATGGTGAAGATGTAGATGGCTTGCCAACCGAGGGTGTTGAGATTACATGTTTCCATTTGGATGGTGCGCATTATATGGTTTACACACCCTCTGATCCACTTCTCTTTGTTGCTGTAAAGGATGATGACGGTCTATTGCAAATTGCTGATGATGATCTGCTGGAGGACCCTGCCATCATTAGCGCCATAGATGAGGAGACCGAGTTTAACGCATTGGTGGAGGAAGAAGCAGCTCTTCTTGATTCATTGCTAGGAAAAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3727

Protein Analysis

326

Amino Acids

35.4

Weight (kDa)

4.84

Isoelectric Point (pI)

51.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3727 PF12527 210 - 304 1.4e-20 Protein of unknown function (DUF3727)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 461
Acc16I TGCGCA 1 cut(s) 786
AciI CCGC 8 cut(s) 111, 138, 141, 341, 353, 357, 566, 648
AclWI GGATC 2 cut(s) 422, 806
AcuI CTGAAG 1 cut(s) 291
AfaI GTAC 1 cut(s) 642
AfiI CCNNNNNNNGG 3 cut(s) 155, 359, 749
AflIII ACRYGT 1 cut(s) 764
AgsI TTSAA 2 cut(s) 284, 587
AhdI GACNNNNNGTC 1 cut(s) 122
AjuI GAANNNNNNNTTGG 2 cut(s) 62, 94
AluBI AGCT 4 cut(s) 270, 480, 590, 950
AluI AGCT 4 cut(s) 270, 480, 590, 950
Alw21I GWGCWC 1 cut(s) 545
Alw26I GTCTC 4 cut(s) 19, 91, 130, 908
AlwI GGATC 2 cut(s) 422, 806
AoxI GGCC 2 cut(s) 157, 249
ApeKI GCWGC 5 cut(s) 132, 343, 502, 605, 947
Asp700I GAANNNNTTC 1 cut(s) 591
AspLEI GCGC 3 cut(s) 137, 787, 902
AspS9I GGNCC 2 cut(s) 158, 883
AsuC2I CCSGG 1 cut(s) 316
AsuHPI GGTGA 2 cut(s) 65, 734
AvaII GGWCC 1 cut(s) 883
BauI CACGAG 1 cut(s) 483
BbsI GAAGAC 1 cut(s) 297
Bbv12I GWGCWC 1 cut(s) 545
BbvI GCAGC 5 cut(s) 119, 330, 489, 592, 959
BccI CCATC 6 cut(s) 339, 548, 713, 728, 773, 899
BceAI ACGGC 1 cut(s) 397
BclI TGATCA 1 cut(s) 376
BcnI CCSGG 1 cut(s) 316
BcoDI GTCTC 4 cut(s) 19, 91, 130, 908
BfaI CTAG 1 cut(s) 968
BfoI RGCGCY 1 cut(s) 903
BisI GCNGC 9 cut(s) 133, 138, 141, 341, 344, 353, 503, 606, 948
BlsI GCNGC 9 cut(s) 134, 139, 142, 342, 345, 354, 504, 607, 949
Bme1390I CCNGG 1 cut(s) 316
Bme18I GGWCC 1 cut(s) 883
BmeRI GACNNNNNGTC 1 cut(s) 122
BmgT120I GGNCC 2 cut(s) 158, 883
BmiI GGNNCC 2 cut(s) 160, 885
BmrFI CCNGG 1 cut(s) 316
BmrI ACTGGG 1 cut(s) 77
BmsI GCATC 1 cut(s) 643
BmuI ACTGGG 1 cut(s) 77
BpiI GAAGAC 1 cut(s) 297
BpmI CTGGAG 1 cut(s) 899
BpuMI CCSGG 1 cut(s) 316
BsaBI GATNNNNATC 1 cut(s) 870
BsaI GGTCTC 1 cut(s) 908
BsaJI CCNNGG 2 cut(s) 252, 747
BsaXI ACNNNNNCTCC 2 cut(s) 905, 935
Bsc4I CCNNNNNNNGG 3 cut(s) 155, 359, 749
Bse118I RCCGGY 1 cut(s) 155
Bse1I ACTGG 3 cut(s) 30, 36, 83
Bse3DI GCAATG 1 cut(s) 962
Bse8I GATNNNNATC 1 cut(s) 870
BseDI CCNNGG 2 cut(s) 252, 747
BseGI GGATG 6 cut(s) 298, 331, 379, 496, 784, 844
BseJI GATNNNNATC 1 cut(s) 870
BseLI CCNNNNNNNGG 3 cut(s) 155, 359, 749
BseMI GCAATG 1 cut(s) 962
BseMII CTCAG 3 cut(s) 24, 164, 699
BseNI ACTGG 3 cut(s) 30, 36, 83
BseRI GAGGAG 2 cut(s) 110, 926
BseXI GCAGC 5 cut(s) 119, 330, 489, 592, 959
BseYI CCCAGC 2 cut(s) 322, 359
BshFI GGCC 2 cut(s) 159, 251
BsiHKAI GWGCWC 1 cut(s) 545
BsiSI CCGG 2 cut(s) 156, 315
BslFI GGGAC 1 cut(s) 24
BslI CCNNNNNNNGG 3 cut(s) 155, 359, 749
BsmAI GTCTC 4 cut(s) 19, 91, 130, 908
BsmBI CGTCTC 1 cut(s) 130
BsmFI GGGAC 1 cut(s) 24
BsnI GGCC 2 cut(s) 159, 251
Bso31I GGTCTC 1 cut(s) 908
Bsp1286I GDGCHC 1 cut(s) 545
Bsp1407I TGTACA 1 cut(s) 640
Bsp143I GATC 4 cut(s) 376, 427, 811, 871
BspACI CCGC 8 cut(s) 111, 138, 141, 341, 353, 357, 566, 648
BspANI GGCC 2 cut(s) 159, 251
BspCNI CTCAG 3 cut(s) 23, 163, 698
BspLI GGNNCC 2 cut(s) 160, 885
BspPI GGATC 2 cut(s) 422, 806
BspQI GCTCTTC 1 cut(s) 957
BspTNI GGTCTC 1 cut(s) 908
BsrDI GCAATG 1 cut(s) 962
BsrFI RCCGGY 1 cut(s) 155
BsrGI TGTACA 1 cut(s) 640
BsrI ACTGG 3 cut(s) 30, 36, 83
BssAI RCCGGY 1 cut(s) 155
BssECI CCNNGG 2 cut(s) 252, 747
BssMI GATC 4 cut(s) 376, 427, 811, 871
BssSI CACGAG 1 cut(s) 483
BssT1I CCWWGG 1 cut(s) 252
Bst2BI CACGAG 1 cut(s) 483
Bst4CI ACNGT 1 cut(s) 848
Bst6I CTCTTC 1 cut(s) 957
BstAUI TGTACA 1 cut(s) 640
BstC8I GCNNGC 2 cut(s) 357, 740
BstDEI CTNAG 3 cut(s) 10, 150, 685
BstEII GGTNACC 1 cut(s) 326
BstF5I GGATG 6 cut(s) 298, 331, 379, 496, 784, 844
BstH2I RGCGCY 1 cut(s) 903
BstHHI GCGC 3 cut(s) 137, 787, 902
BstKTI GATC 4 cut(s) 379, 430, 814, 874
BstMAI GTCTC 4 cut(s) 19, 91, 130, 908
BstMBI GATC 4 cut(s) 376, 427, 811, 871
BstMWI GCNNNNNNNGC 4 cut(s) 349, 352, 611, 654
BstNSI RCATGY 1 cut(s) 768
BstPI GGTNACC 1 cut(s) 326
BstSCI CCNGG 1 cut(s) 314
BstV1I GCAGC 5 cut(s) 119, 330, 489, 592, 959
BstV2I GAAGAC 1 cut(s) 297
BstXI CCANNNNNNTGG 1 cut(s) 779
BsuRI GGCC 2 cut(s) 159, 251
BtsCI GGATG 6 cut(s) 298, 331, 379, 496, 784, 844
BtsIMutI CAGTG 1 cut(s) 577
Cac8I GCNNGC 2 cut(s) 357, 740
CfoI GCGC 3 cut(s) 137, 787, 902
Cfr10I RCCGGY 1 cut(s) 155
Cfr13I GGNCC 2 cut(s) 158, 883
Csp6I GTAC 1 cut(s) 641
CviAII CATG 1 cut(s) 765
CviQI GTAC 1 cut(s) 641
DdeI CTNAG 3 cut(s) 10, 150, 685
DpnI GATC 4 cut(s) 378, 429, 813, 873
DpnII GATC 4 cut(s) 376, 427, 811, 871
DriI GACNNNNNGTC 1 cut(s) 122
Eam1104I CTCTTC 1 cut(s) 957
Eam1105I GACNNNNNGTC 1 cut(s) 122
EarI CTCTTC 1 cut(s) 957
Eco130I CCWWGG 1 cut(s) 252
Eco31I GGTCTC 1 cut(s) 908
Eco47I GGWCC 1 cut(s) 883
Eco57I CTGAAG 1 cut(s) 291
Eco91I GGTNACC 1 cut(s) 326
EcoO109I RGGNCCY 1 cut(s) 883
EcoO65I GGTNACC 1 cut(s) 326
EcoT14I CCWWGG 1 cut(s) 252
EcoT22I ATGCAT 1 cut(s) 636
ErhI CCWWGG 1 cut(s) 252
Esp3I CGTCTC 1 cut(s) 130
FaeI CATG 1 cut(s) 768
FalI AAGNNNNNCTT 4 cut(s) 579, 611, 936, 968
FaqI GGGAC 1 cut(s) 24
FatI CATG 1 cut(s) 764
FauI CCCGC 1 cut(s) 364
FauNDI CATATG 1 cut(s) 630
FbaI TGATCA 1 cut(s) 376
Fnu4HI GCNGC 9 cut(s) 133, 138, 141, 341, 344, 353, 503, 606, 948
FokI GGATG 6 cut(s) 305, 318, 386, 503, 791, 851
Fsp4HI GCNGC 9 cut(s) 133, 138, 141, 341, 344, 353, 503, 606, 948
FspAI RTGCGCAY 1 cut(s) 786
FspBI CTAG 1 cut(s) 968
FspI TGCGCA 1 cut(s) 786
GlaI GCGC 3 cut(s) 136, 786, 901
GluI GCNGC 9 cut(s) 133, 138, 141, 341, 344, 353, 503, 606, 948
GsaI CCCAGC 2 cut(s) 326, 363
GsuI CTGGAG 1 cut(s) 899
HaeII RGCGCY 1 cut(s) 903
HaeIII GGCC 2 cut(s) 159, 251
HapII CCGG 2 cut(s) 156, 315
HhaI GCGC 3 cut(s) 137, 787, 902
Hin1II CATG 1 cut(s) 768
Hin6I GCGC 3 cut(s) 135, 785, 900
HinP1I GCGC 3 cut(s) 135, 785, 900
HincII GTYRAC 1 cut(s) 517
HindII GTYRAC 1 cut(s) 517
HinfI GANTC 3 cut(s) 117, 311, 959
HpaII CCGG 2 cut(s) 156, 315
HphI GGTGA 2 cut(s) 65, 734
Hpy166II GTNNAC 2 cut(s) 517, 799
Hpy188I TCNGA 6 cut(s) 153, 310, 476, 531, 688, 811
Hpy188III TCNNGA 3 cut(s) 166, 483, 956
Hpy8I GTNNAC 2 cut(s) 517, 799
HpyAV CCTTC 2 cut(s) 192, 609
HpyCH4III ACNGT 1 cut(s) 848
HpyCH4V TGCA 2 cut(s) 634, 856
HpyF10VI GCNNNNNNNGC 4 cut(s) 349, 352, 611, 654
HpyF3I CTNAG 3 cut(s) 10, 150, 685
Hsp92II CATG 1 cut(s) 768
HspAI GCGC 3 cut(s) 135, 785, 900
Ksp22I TGATCA 1 cut(s) 376
Kzo9I GATC 4 cut(s) 376, 427, 811, 871
LguI GCTCTTC 1 cut(s) 957
Lsp1109I GCAGC 5 cut(s) 119, 330, 489, 592, 959
LweI GCATC 1 cut(s) 643
MaeI CTAG 1 cut(s) 968
MaeIII GTNAC 2 cut(s) 326, 680
MalI GATC 4 cut(s) 378, 429, 813, 873
MboI GATC 4 cut(s) 376, 427, 811, 871
MboII GAAGA 9 cut(s) 46, 181, 297, 587, 590, 701, 737, 944, 953
MhlI GDGCHC 1 cut(s) 545
MluCI AATT 6 cut(s) 44, 77, 285, 411, 439, 858
MlyI GAGTC 1 cut(s) 111
Mph1103I ATGCAT 1 cut(s) 636
MroXI GAANNNNTTC 1 cut(s) 591
MseI TTAA 2 cut(s) 536, 924
MslI CAYNNNNRTG 2 cut(s) 451, 777
MspA1I CMGCKG 3 cut(s) 343, 359, 566
MspI CCGG 2 cut(s) 156, 315
MspR9I CCNGG 1 cut(s) 316
MwoI GCNNNNNNNGC 4 cut(s) 349, 352, 611, 654
NciI CCSGG 1 cut(s) 316
NdeI CATATG 1 cut(s) 630
NdeII GATC 4 cut(s) 376, 427, 811, 871
NlaIII CATG 1 cut(s) 768
NlaIV GGNNCC 2 cut(s) 160, 885
NsbI TGCGCA 1 cut(s) 786
NsiI ATGCAT 1 cut(s) 636
NspI RCATGY 1 cut(s) 768
PciI ACATGT 1 cut(s) 764
PciSI GCTCTTC 1 cut(s) 957
PcsI WCGNNNNNNNCGW 1 cut(s) 344
PdmI GAANNNNTTC 1 cut(s) 591
PfeI GAWTC 2 cut(s) 311, 959
PkrI GCNGC 9 cut(s) 134, 139, 142, 342, 345, 354, 504, 607, 949
PleI GAGTC 1 cut(s) 111
PpsI GAGTC 1 cut(s) 111
PpuMI RGGWCCY 1 cut(s) 883
PscI ACATGT 1 cut(s) 764
PsiI TTATAA 1 cut(s) 461
Psp5II RGGWCCY 1 cut(s) 883
PspEI GGTNACC 1 cut(s) 326
PspFI CCCAGC 2 cut(s) 322, 359
PspN4I GGNNCC 2 cut(s) 160, 885
PspPI GGNCC 2 cut(s) 158, 883
PspPPI RGGWCCY 1 cut(s) 883
RsaI GTAC 1 cut(s) 642
RsaNI GTAC 1 cut(s) 641
RseI CAYNNNNRTG 2 cut(s) 451, 777
SapI GCTCTTC 1 cut(s) 957
SaqAI TTAA 2 cut(s) 536, 924
SatI GCNGC 9 cut(s) 133, 138, 141, 341, 344, 353, 503, 606, 948
Sau3AI GATC 4 cut(s) 376, 427, 811, 871
Sau96I GGNCC 2 cut(s) 158, 883
SchI GAGTC 1 cut(s) 111
ScrFI CCNGG 1 cut(s) 316
SduI GDGCHC 1 cut(s) 545
SetI ASST 5 cut(s) 272, 282, 482, 592, 952
SfaNI GCATC 1 cut(s) 643
SinI GGWCC 1 cut(s) 883
SmiMI CAYNNNNRTG 2 cut(s) 451, 777
Sse9I AATT 6 cut(s) 44, 77, 285, 411, 439, 858
SsiI CCGC 8 cut(s) 111, 138, 141, 341, 353, 357, 566, 648
SspMI CTAG 1 cut(s) 968
StyD4I CCNGG 1 cut(s) 314
StyI CCWWGG 1 cut(s) 252
TaaI ACNGT 1 cut(s) 848
TaqI TCGA 1 cut(s) 419
TaqII GACCGA 1 cut(s) 932
TasI AATT 6 cut(s) 44, 77, 285, 411, 439, 858
TatI WGTACW 1 cut(s) 640
TauI GCSGC 4 cut(s) 140, 143, 343, 355
TfiI GAWTC 2 cut(s) 311, 959
Tru1I TTAA 2 cut(s) 536, 924
Tru9I TTAA 2 cut(s) 536, 924
TscAI CASTG 1 cut(s) 577
TseI GCWGC 5 cut(s) 132, 343, 502, 605, 947
TspDTI ATGAA 3 cut(s) 507, 591, 951
TspRI CASTG 1 cut(s) 577
VpaK11BI GGWCC 1 cut(s) 883
XceI RCATGY 1 cut(s) 768
XmnI GAANNNNTTC 1 cut(s) 591
XspI CTAG 1 cut(s) 968
Zsp2I ATGCAT 1 cut(s) 636
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.