Rw2G023880

Protein of unknown function (DUF3727)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0005107
Physical Location & Seq
Reverse (-)
35008097 .. 35013883
5787 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G023880.1

Sequence Viewer

Length: 987 bp
ATGGCTTTCTCAGTCTCCACAGCCACAGCCACAGCCAGTTCCAGTCCCCAATTCCATTTCTTCTCTGTTCACTCCAATCACCAATTCCCAGTCTCCCTCTCTCTCCCAACCCACACCGCCAGACTCCTCGTCTCCTGCTGCGCCGCCGCAAAGCCTCAGACCGGCCCCGTCAAGAAGAAGCGCTCTCCTCCCTCGCCCACCACCACCACCACCGCCGCCAACAACAACAGCAACAACAACAAGAAAAAGCGTAAGGCGAAGGATAATAATACCAGCTTTAGCAAGGTTGAAATTGTGGATGATTTCGGGTCTTCAGATTCCGGGTCGCTGGGTTACCATCCTACGCCGCTGCCGAAGCCGCCCGCTGGGTTTGTAGTGGATGATCACGGCAGGGTGCTTATGGCTTCGTCCAAGCGAATTGCCTCGATTGTTGATCCTACCAATAATTTCCCATTAGAGTGCGTTATAAGGAGAGTGTTCAGAAGCTCACGAGGGGATGAATGTATGCTGCTTTGCCCTGTTGACACGCCTGTTCAGATATTAAAGAGCACCAATATAGATGGTTGGTCAGCGGTCAGTGATGAAGAAGTTGAAGCTATTCTTCCTTCTGCTGCTTATGCCCTTGCCAAGATACATATGCATCTTGTACATAGCGGATTTTGCTATACAGCAAGGGGAGGATTTTGTTACTCAGAAGATGACATATTTGATTTTCGCACAGATGATGGTGAAGATGTAGATGGCTTGCCAACCGAGGGTGTTGAGATTACATGTTTCCATTTGGATGGTGCGCATTATATGGTTTACACACCCTCTGATCCACTTCTCTTTGTTGCTGTAAAGGATGATGACGGTCTATTGCAAATTGCTGATGATGATCTGCTGGAGGACCCTGCCATCATTAGCGCCATAGATGAGGAGACCGAGTTTAACGCATTGGTGGAGGAAGAAGCAGCTCTTCTTGATTCATTGCTAGGAAAAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3727

Protein Analysis

328

Amino Acids

35.51

Weight (kDa)

4.84

Isoelectric Point (pI)

51.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3727 PF12527 212 - 306 1.5e-20 Protein of unknown function (DUF3727)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 467
Acc16I TGCGCA 1 cut(s) 792
AclWI GGATC 2 cut(s) 428, 812
AcuI CTGAAG 1 cut(s) 297
AfaI GTAC 1 cut(s) 648
AfeI AGCGCT 1 cut(s) 182
AfiI CCNNNNNNNGG 3 cut(s) 161, 365, 755
AflIII ACRYGT 1 cut(s) 770
AgsI TTSAA 2 cut(s) 290, 593
AhdI GACNNNNNGTC 1 cut(s) 128
AjuI GAANNNNNNNTTGG 2 cut(s) 68, 100
AluBI AGCT 4 cut(s) 276, 486, 596, 956
AluI AGCT 4 cut(s) 276, 486, 596, 956
Alw21I GWGCWC 1 cut(s) 551
Alw26I GTCTC 4 cut(s) 19, 97, 136, 914
AlwI GGATC 2 cut(s) 428, 812
Aor51HI AGCGCT 1 cut(s) 182
AoxI GGCC 1 cut(s) 163
ApeKI GCWGC 5 cut(s) 138, 349, 508, 611, 953
Asp700I GAANNNNTTC 1 cut(s) 597
AspLEI GCGC 4 cut(s) 143, 183, 793, 908
AspS9I GGNCC 2 cut(s) 164, 889
AsuC2I CCSGG 1 cut(s) 322
AsuHPI GGTGA 2 cut(s) 71, 740
AvaII GGWCC 1 cut(s) 889
BauI CACGAG 1 cut(s) 489
BbsI GAAGAC 1 cut(s) 303
Bbv12I GWGCWC 1 cut(s) 551
BbvI GCAGC 5 cut(s) 125, 336, 495, 598, 965
BccI CCATC 6 cut(s) 345, 554, 719, 734, 779, 905
BceAI ACGGC 1 cut(s) 403
BclI TGATCA 1 cut(s) 382
BcnI CCSGG 1 cut(s) 322
BcoDI GTCTC 4 cut(s) 19, 97, 136, 914
BfaI CTAG 1 cut(s) 974
BfoI RGCGCY 2 cut(s) 184, 909
Bme1390I CCNGG 1 cut(s) 322
Bme18I GGWCC 1 cut(s) 889
BmeRI GACNNNNNGTC 1 cut(s) 128
BmgT120I GGNCC 2 cut(s) 164, 889
BmiI GGNNCC 2 cut(s) 166, 891
BmrFI CCNGG 1 cut(s) 322
BmrI ACTGGG 1 cut(s) 83
BmsI GCATC 1 cut(s) 649
BmuI ACTGGG 1 cut(s) 83
BpiI GAAGAC 1 cut(s) 303
BpmI CTGGAG 1 cut(s) 905
BpuMI CCSGG 1 cut(s) 322
BsaBI GATNNNNATC 1 cut(s) 876
BsaI GGTCTC 1 cut(s) 914
BsaJI CCNNGG 1 cut(s) 753
BsaXI ACNNNNNCTCC 2 cut(s) 911, 941
Bsc4I CCNNNNNNNGG 3 cut(s) 161, 365, 755
Bse118I RCCGGY 1 cut(s) 161
Bse1I ACTGG 3 cut(s) 36, 42, 89
Bse3DI GCAATG 1 cut(s) 968
Bse8I GATNNNNATC 1 cut(s) 876
BseDI CCNNGG 1 cut(s) 753
BseGI GGATG 6 cut(s) 304, 337, 385, 502, 790, 850
BseJI GATNNNNATC 1 cut(s) 876
BseLI CCNNNNNNNGG 3 cut(s) 161, 365, 755
BseMI GCAATG 1 cut(s) 968
BseMII CTCAG 3 cut(s) 24, 170, 705
BseNI ACTGG 3 cut(s) 36, 42, 89
BseRI GAGGAG 3 cut(s) 116, 177, 932
BseXI GCAGC 5 cut(s) 125, 336, 495, 598, 965
BseYI CCCAGC 2 cut(s) 328, 365
BshFI GGCC 1 cut(s) 165
BsiHKAI GWGCWC 1 cut(s) 551
BsiSI CCGG 2 cut(s) 162, 321
BslFI GGGAC 1 cut(s) 30
BslI CCNNNNNNNGG 3 cut(s) 161, 365, 755
BsmAI GTCTC 4 cut(s) 19, 97, 136, 914
BsmBI CGTCTC 1 cut(s) 136
BsmFI GGGAC 1 cut(s) 30
BsnI GGCC 1 cut(s) 165
Bso31I GGTCTC 1 cut(s) 914
Bsp1286I GDGCHC 1 cut(s) 551
Bsp1407I TGTACA 1 cut(s) 646
Bsp143I GATC 4 cut(s) 382, 433, 817, 877
BspANI GGCC 1 cut(s) 165
BspCNI CTCAG 3 cut(s) 23, 169, 704
BspLI GGNNCC 2 cut(s) 166, 891
BspPI GGATC 2 cut(s) 428, 812
BspQI GCTCTTC 1 cut(s) 963
BspTNI GGTCTC 1 cut(s) 914
BsrDI GCAATG 1 cut(s) 968
BsrFI RCCGGY 1 cut(s) 161
BsrGI TGTACA 1 cut(s) 646
BsrI ACTGG 3 cut(s) 36, 42, 89
BssAI RCCGGY 1 cut(s) 161
BssECI CCNNGG 1 cut(s) 753
BssMI GATC 4 cut(s) 382, 433, 817, 877
BssSI CACGAG 1 cut(s) 489
Bst2BI CACGAG 1 cut(s) 489
Bst4CI ACNGT 1 cut(s) 854
Bst6I CTCTTC 1 cut(s) 963
BstAUI TGTACA 1 cut(s) 646
BstC8I GCNNGC 2 cut(s) 363, 746
BstDEI CTNAG 3 cut(s) 10, 156, 691
BstEII GGTNACC 1 cut(s) 332
BstF5I GGATG 6 cut(s) 304, 337, 385, 502, 790, 850
BstH2I RGCGCY 2 cut(s) 184, 909
BstHHI GCGC 4 cut(s) 143, 183, 793, 908
BstKTI GATC 4 cut(s) 385, 436, 820, 880
BstMAI GTCTC 4 cut(s) 19, 97, 136, 914
BstMBI GATC 4 cut(s) 382, 433, 817, 877
BstMWI GCNNNNNNNGC 4 cut(s) 355, 358, 617, 660
BstNSI RCATGY 1 cut(s) 774
BstPI GGTNACC 1 cut(s) 332
BstSCI CCNGG 1 cut(s) 320
BstV1I GCAGC 5 cut(s) 125, 336, 495, 598, 965
BstV2I GAAGAC 1 cut(s) 303
BstXI CCANNNNNNTGG 1 cut(s) 785
BsuRI GGCC 1 cut(s) 165
BtsCI GGATG 6 cut(s) 304, 337, 385, 502, 790, 850
BtsIMutI CAGTG 1 cut(s) 583
Cac8I GCNNGC 2 cut(s) 363, 746
CfoI GCGC 4 cut(s) 143, 183, 793, 908
Cfr10I RCCGGY 1 cut(s) 161
Cfr13I GGNCC 2 cut(s) 164, 889
Csp6I GTAC 1 cut(s) 647
CviAII CATG 1 cut(s) 771
CviQI GTAC 1 cut(s) 647
DdeI CTNAG 3 cut(s) 10, 156, 691
DpnI GATC 4 cut(s) 384, 435, 819, 879
DpnII GATC 4 cut(s) 382, 433, 817, 877
DriI GACNNNNNGTC 1 cut(s) 128
Eam1104I CTCTTC 1 cut(s) 963
Eam1105I GACNNNNNGTC 1 cut(s) 128
EarI CTCTTC 1 cut(s) 963
Eco31I GGTCTC 1 cut(s) 914
Eco47I GGWCC 1 cut(s) 889
Eco47III AGCGCT 1 cut(s) 182
Eco57I CTGAAG 1 cut(s) 297
Eco91I GGTNACC 1 cut(s) 332
EcoO109I RGGNCCY 1 cut(s) 889
EcoO65I GGTNACC 1 cut(s) 332
EcoT22I ATGCAT 1 cut(s) 642
Esp3I CGTCTC 1 cut(s) 136
FaeI CATG 1 cut(s) 774
FalI AAGNNNNNCTT 4 cut(s) 585, 617, 942, 974
FaqI GGGAC 1 cut(s) 30
FatI CATG 1 cut(s) 770
FauI CCCGC 1 cut(s) 370
FauNDI CATATG 1 cut(s) 636
FbaI TGATCA 1 cut(s) 382
FokI GGATG 6 cut(s) 311, 324, 392, 509, 797, 857
FspAI RTGCGCAY 1 cut(s) 792
FspBI CTAG 1 cut(s) 974
FspI TGCGCA 1 cut(s) 792
GlaI GCGC 4 cut(s) 142, 182, 792, 907
GsaI CCCAGC 2 cut(s) 332, 369
GsuI CTGGAG 1 cut(s) 905
HaeII RGCGCY 2 cut(s) 184, 909
HaeIII GGCC 1 cut(s) 165
HapII CCGG 2 cut(s) 162, 321
HhaI GCGC 4 cut(s) 143, 183, 793, 908
Hin1II CATG 1 cut(s) 774
Hin6I GCGC 4 cut(s) 141, 181, 791, 906
HinP1I GCGC 4 cut(s) 141, 181, 791, 906
HincII GTYRAC 1 cut(s) 523
HindII GTYRAC 1 cut(s) 523
HinfI GANTC 3 cut(s) 123, 317, 965
HpaII CCGG 2 cut(s) 162, 321
HphI GGTGA 2 cut(s) 71, 740
Hpy166II GTNNAC 3 cut(s) 70, 523, 805
Hpy188I TCNGA 6 cut(s) 159, 316, 482, 537, 694, 817
Hpy188III TCNNGA 3 cut(s) 172, 489, 962
Hpy8I GTNNAC 3 cut(s) 70, 523, 805
HpyAV CCTTC 2 cut(s) 253, 615
HpyCH4III ACNGT 1 cut(s) 854
HpyCH4V TGCA 2 cut(s) 640, 862
HpyF10VI GCNNNNNNNGC 4 cut(s) 355, 358, 617, 660
HpyF3I CTNAG 3 cut(s) 10, 156, 691
Hsp92II CATG 1 cut(s) 774
HspAI GCGC 4 cut(s) 141, 181, 791, 906
Ksp22I TGATCA 1 cut(s) 382
Kzo9I GATC 4 cut(s) 382, 433, 817, 877
LguI GCTCTTC 1 cut(s) 963
Lsp1109I GCAGC 5 cut(s) 125, 336, 495, 598, 965
LweI GCATC 1 cut(s) 649
MaeI CTAG 1 cut(s) 974
MaeIII GTNAC 2 cut(s) 332, 686
MalI GATC 4 cut(s) 384, 435, 819, 879
MboI GATC 4 cut(s) 382, 433, 817, 877
MboII GAAGA 9 cut(s) 52, 187, 303, 593, 596, 707, 743, 950, 959
MhlI GDGCHC 1 cut(s) 551
MluCI AATT 6 cut(s) 50, 83, 291, 417, 445, 864
MlyI GAGTC 1 cut(s) 117
Mph1103I ATGCAT 1 cut(s) 642
MroXI GAANNNNTTC 1 cut(s) 597
MseI TTAA 2 cut(s) 542, 930
MslI CAYNNNNRTG 2 cut(s) 457, 783
MspA1I CMGCKG 3 cut(s) 349, 365, 572
MspI CCGG 2 cut(s) 162, 321
MspR9I CCNGG 1 cut(s) 322
MwoI GCNNNNNNNGC 4 cut(s) 355, 358, 617, 660
NciI CCSGG 1 cut(s) 322
NdeI CATATG 1 cut(s) 636
NdeII GATC 4 cut(s) 382, 433, 817, 877
NlaIII CATG 1 cut(s) 774
NlaIV GGNNCC 2 cut(s) 166, 891
NsbI TGCGCA 1 cut(s) 792
NsiI ATGCAT 1 cut(s) 642
NspI RCATGY 1 cut(s) 774
PciI ACATGT 1 cut(s) 770
PciSI GCTCTTC 1 cut(s) 963
PcsI WCGNNNNNNNCGW 1 cut(s) 350
PdmI GAANNNNTTC 1 cut(s) 597
PfeI GAWTC 2 cut(s) 317, 965
PleI GAGTC 1 cut(s) 117
PpsI GAGTC 1 cut(s) 117
PpuMI RGGWCCY 1 cut(s) 889
PscI ACATGT 1 cut(s) 770
PsiI TTATAA 1 cut(s) 467
Psp5II RGGWCCY 1 cut(s) 889
PspEI GGTNACC 1 cut(s) 332
PspFI CCCAGC 2 cut(s) 328, 365
PspN4I GGNNCC 2 cut(s) 166, 891
PspPI GGNCC 2 cut(s) 164, 889
PspPPI RGGWCCY 1 cut(s) 889
RsaI GTAC 1 cut(s) 648
RsaNI GTAC 1 cut(s) 647
RseI CAYNNNNRTG 2 cut(s) 457, 783
SapI GCTCTTC 1 cut(s) 963
SaqAI TTAA 2 cut(s) 542, 930
Sau3AI GATC 4 cut(s) 382, 433, 817, 877
Sau96I GGNCC 2 cut(s) 164, 889
SchI GAGTC 1 cut(s) 117
ScrFI CCNGG 1 cut(s) 322
SduI GDGCHC 1 cut(s) 551
SetI ASST 5 cut(s) 278, 288, 488, 598, 958
SfaNI GCATC 1 cut(s) 649
SinI GGWCC 1 cut(s) 889
SmiMI CAYNNNNRTG 2 cut(s) 457, 783
Sse9I AATT 6 cut(s) 50, 83, 291, 417, 445, 864
SspMI CTAG 1 cut(s) 974
StyD4I CCNGG 1 cut(s) 320
TaaI ACNGT 1 cut(s) 854
TaqI TCGA 1 cut(s) 425
TaqII GACCGA 1 cut(s) 938
TasI AATT 6 cut(s) 50, 83, 291, 417, 445, 864
TatI WGTACW 1 cut(s) 646
TauI GCSGC 5 cut(s) 146, 149, 218, 349, 361
TfiI GAWTC 2 cut(s) 317, 965
Tru1I TTAA 2 cut(s) 542, 930
Tru9I TTAA 2 cut(s) 542, 930
TscAI CASTG 1 cut(s) 583
TseI GCWGC 5 cut(s) 138, 349, 508, 611, 953
TspDTI ATGAA 3 cut(s) 513, 597, 957
TspRI CASTG 1 cut(s) 583
VpaK11BI GGWCC 1 cut(s) 889
XceI RCATGY 1 cut(s) 774
XmnI GAANNNNTTC 1 cut(s) 597
XspI CTAG 1 cut(s) 974
Zsp2I ATGCAT 1 cut(s) 642
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.