Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008259.1

Orthogroup ID

OG0005107

Physical Location & Seq

Genomic Coordinates Forward (+)

13090 .. 15843

Gene Structure 2754 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008259.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

atggttggtcagcgtgatgaagaagttgaagctattcttccttctgctgcttatgcccttgccaagatacatatgcatcttgtacatagcggattttgctatacagcaaggggaggattttgttactcagaagatgacatatttgattttcgcacagatgatggtgaagatgtagatggcttgccaaccgagggtgttgagattacatgtttccatttggatggtgcgcattatatggtttacacaccctctgatccacttctctttgttgctgtaaaggatgatgacggtctattgcaaattgctgatgatgatctgctggaggaccctgccatcattagcgccatagatgaggagaccgagtttaacgcattggtggaggaagaagcagctcttcttgattcattgctaggaaaagagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3727

Protein Analysis

140

Amino Acids

15.39

Weight (kDa)

4.05

Isoelectric Point (pI)

47.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005107)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33480
fragaria_vesca	FvH4_1g25120 FvH4_1g25120 FvH4_1g25120 FvH4_1g25120 FvH4_1g25120 FvH4_1g25120 FvH4_1g25120 FvH4_1g25120
malus_domestica	MD00G1064700.v1.1
prunus_persica	Prupe.4G278200_v2.0.a1 Prupe.4G278200_v2.0.a1 Prupe.4G278200_v2.0.a1
pyrus_communis	pycom520g00290
rosa_chinensis	RchiOBHm_Chr2g0122781
rosa_laevigata	RLG00000018711
rosa_multiflora	Rmu_sc0008259.1_g000002 Rmu_sc0019417.1_g000001 Rmu_sc0032021.1_g000001 Rmu_sc0039730.1_g000001
rosa_roxburghii	Rroxscaffold_2G00121230
rosa_rugosa	Rorug02G0242400 Rorug02G0242500.1
rosa_samantha	Rh2AG300400 Rh2BG308500 Rh2CG287300 Rh2DG324600
rosa_wichuraiana	Rw2G023880 Rw2G024090 Rw2G024120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	228
AciI	CCGC	1 cut(s)	90
AclWI	GGATC	1 cut(s)	248
AfaI	GTAC	1 cut(s)	84
AfiI	CCNNNNNNNGG	1 cut(s)	191
AflIII	ACRYGT	1 cut(s)	206
AgsI	TTSAA	1 cut(s)	29
AluBI	AGCT	2 cut(s)	32, 392
AluI	AGCT	2 cut(s)	32, 392
Alw26I	GTCTC	1 cut(s)	350
AlwI	GGATC	1 cut(s)	248
ApeKI	GCWGC	2 cut(s)	47, 389
Asp700I	GAANNNNTTC	1 cut(s)	33
AspLEI	GCGC	2 cut(s)	229, 344
AspS9I	GGNCC	1 cut(s)	325
AsuHPI	GGTGA	1 cut(s)	176
AvaII	GGWCC	1 cut(s)	325
BbvI	GCAGC	2 cut(s)	34, 401
BccI	CCATC	4 cut(s)	155, 170, 215, 341
BcoDI	GTCTC	1 cut(s)	350
BfaI	CTAG	1 cut(s)	410
BfoI	RGCGCY	1 cut(s)	345
BisI	GCNGC	2 cut(s)	48, 390
BlsI	GCNGC	2 cut(s)	49, 391
Bme18I	GGWCC	1 cut(s)	325
BmgT120I	GGNCC	1 cut(s)	325
BmiI	GGNNCC	1 cut(s)	327
BmsI	GCATC	1 cut(s)	85
BpmI	CTGGAG	1 cut(s)	341
BsaBI	GATNNNNATC	1 cut(s)	312
BsaI	GGTCTC	1 cut(s)	350
BsaJI	CCNNGG	1 cut(s)	189
BsaXI	ACNNNNNCTCC	2 cut(s)	347, 377
Bsc4I	CCNNNNNNNGG	1 cut(s)	191
Bse3DI	GCAATG	1 cut(s)	404
Bse8I	GATNNNNATC	1 cut(s)	312
BseDI	CCNNGG	1 cut(s)	189
BseGI	GGATG	2 cut(s)	226, 286
BseJI	GATNNNNATC	1 cut(s)	312
BseLI	CCNNNNNNNGG	1 cut(s)	191
BseMI	GCAATG	1 cut(s)	404
BseMII	CTCAG	1 cut(s)	141
BseRI	GAGGAG	1 cut(s)	368
BseXI	GCAGC	2 cut(s)	34, 401
BslI	CCNNNNNNNGG	1 cut(s)	191
BsmAI	GTCTC	1 cut(s)	350
Bso31I	GGTCTC	1 cut(s)	350
Bsp1407I	TGTACA	1 cut(s)	82
Bsp143I	GATC	2 cut(s)	253, 313
BspACI	CCGC	1 cut(s)	90
BspCNI	CTCAG	1 cut(s)	140
BspLI	GGNNCC	1 cut(s)	327
BspPI	GGATC	1 cut(s)	248
BspQI	GCTCTTC	1 cut(s)	399
BspTNI	GGTCTC	1 cut(s)	350
BsrDI	GCAATG	1 cut(s)	404
BsrGI	TGTACA	1 cut(s)	82
BssECI	CCNNGG	1 cut(s)	189
BssMI	GATC	2 cut(s)	253, 313
Bst4CI	ACNGT	1 cut(s)	290
Bst6I	CTCTTC	1 cut(s)	399
BstAUI	TGTACA	1 cut(s)	82
BstC8I	GCNNGC	1 cut(s)	182
BstDEI	CTNAG	1 cut(s)	127
BstF5I	GGATG	2 cut(s)	226, 286
BstH2I	RGCGCY	1 cut(s)	345
BstHHI	GCGC	2 cut(s)	229, 344
BstKTI	GATC	2 cut(s)	256, 316
BstMAI	GTCTC	1 cut(s)	350
BstMBI	GATC	2 cut(s)	253, 313
BstMWI	GCNNNNNNNGC	2 cut(s)	53, 96
BstNSI	RCATGY	1 cut(s)	210
BstV1I	GCAGC	2 cut(s)	34, 401
BstXI	CCANNNNNNTGG	1 cut(s)	221
BtsCI	GGATG	2 cut(s)	226, 286
Cac8I	GCNNGC	1 cut(s)	182
CfoI	GCGC	2 cut(s)	229, 344
Cfr13I	GGNCC	1 cut(s)	325
Csp6I	GTAC	1 cut(s)	83
CviAII	CATG	1 cut(s)	207
CviJI	RGCY	3 cut(s)	32, 180, 392
CviKI_1	RGCY	3 cut(s)	32, 180, 392
CviQI	GTAC	1 cut(s)	83
DdeI	CTNAG	1 cut(s)	127
DpnI	GATC	2 cut(s)	255, 315
DpnII	GATC	2 cut(s)	253, 313
Eam1104I	CTCTTC	1 cut(s)	399
EarI	CTCTTC	1 cut(s)	399
Eco31I	GGTCTC	1 cut(s)	350
Eco47I	GGWCC	1 cut(s)	325
EcoO109I	RGGNCCY	1 cut(s)	325
EcoT22I	ATGCAT	1 cut(s)	78
FaeI	CATG	1 cut(s)	210
FalI	AAGNNNNNCTT	4 cut(s)	21, 53, 378, 410
FatI	CATG	1 cut(s)	206
FauNDI	CATATG	1 cut(s)	72
Fnu4HI	GCNGC	2 cut(s)	48, 390
FokI	GGATG	2 cut(s)	233, 293
Fsp4HI	GCNGC	2 cut(s)	48, 390
FspAI	RTGCGCAY	1 cut(s)	228
FspBI	CTAG	1 cut(s)	410
FspI	TGCGCA	1 cut(s)	228
GlaI	GCGC	2 cut(s)	228, 343
GluI	GCNGC	2 cut(s)	48, 390
GsuI	CTGGAG	1 cut(s)	341
HaeII	RGCGCY	1 cut(s)	345
HhaI	GCGC	2 cut(s)	229, 344
Hin1II	CATG	1 cut(s)	210
Hin6I	GCGC	2 cut(s)	227, 342
HinP1I	GCGC	2 cut(s)	227, 342
HinfI	GANTC	1 cut(s)	401
HphI	GGTGA	1 cut(s)	176
Hpy166II	GTNNAC	1 cut(s)	241
Hpy188I	TCNGA	2 cut(s)	130, 253
Hpy188III	TCNNGA	1 cut(s)	398
Hpy8I	GTNNAC	1 cut(s)	241
HpyAV	CCTTC	1 cut(s)	51
HpyCH4III	ACNGT	1 cut(s)	290
HpyCH4V	TGCA	2 cut(s)	76, 298
HpyF10VI	GCNNNNNNNGC	2 cut(s)	53, 96
HpyF3I	CTNAG	1 cut(s)	127
Hsp92II	CATG	1 cut(s)	210
HspAI	GCGC	2 cut(s)	227, 342
Kzo9I	GATC	2 cut(s)	253, 313
LguI	GCTCTTC	1 cut(s)	399
LpnPI	CCDG	2 cut(s)	305, 342
Lsp1109I	GCAGC	2 cut(s)	34, 401
LweI	GCATC	1 cut(s)	85
MaeI	CTAG	1 cut(s)	410
MaeIII	GTNAC	1 cut(s)	122
MalI	GATC	2 cut(s)	255, 315
MboI	GATC	2 cut(s)	253, 313
MboII	GAAGA	6 cut(s)	29, 32, 143, 179, 386, 395
MluCI	AATT	1 cut(s)	300
MnlI	CCTC	6 cut(s)	107, 184, 259, 316, 346, 373
Mph1103I	ATGCAT	1 cut(s)	78
MroXI	GAANNNNTTC	1 cut(s)	33
MseI	TTAA	1 cut(s)	366
MslI	CAYNNNNRTG	1 cut(s)	219
MwoI	GCNNNNNNNGC	2 cut(s)	53, 96
NdeI	CATATG	1 cut(s)	72
NdeII	GATC	2 cut(s)	253, 313
NlaIII	CATG	1 cut(s)	210
NlaIV	GGNNCC	1 cut(s)	327
NsbI	TGCGCA	1 cut(s)	228
NsiI	ATGCAT	1 cut(s)	78
NspI	RCATGY	1 cut(s)	210
PciI	ACATGT	1 cut(s)	206
PciSI	GCTCTTC	1 cut(s)	399
PdmI	GAANNNNTTC	1 cut(s)	33
PfeI	GAWTC	1 cut(s)	401
PkrI	GCNGC	2 cut(s)	49, 391
PpuMI	RGGWCCY	1 cut(s)	325
PscI	ACATGT	1 cut(s)	206
Psp5II	RGGWCCY	1 cut(s)	325
PspN4I	GGNNCC	1 cut(s)	327
PspPI	GGNCC	1 cut(s)	325
PspPPI	RGGWCCY	1 cut(s)	325
RsaI	GTAC	1 cut(s)	84
RsaNI	GTAC	1 cut(s)	83
RseI	CAYNNNNRTG	1 cut(s)	219
SapI	GCTCTTC	1 cut(s)	399
SaqAI	TTAA	1 cut(s)	366
SatI	GCNGC	2 cut(s)	48, 390
Sau3AI	GATC	2 cut(s)	253, 313
Sau96I	GGNCC	1 cut(s)	325
SetI	ASST	2 cut(s)	34, 394
SfaNI	GCATC	1 cut(s)	85
SinI	GGWCC	1 cut(s)	325
SmiMI	CAYNNNNRTG	1 cut(s)	219
Sse9I	AATT	1 cut(s)	300
SsiI	CCGC	1 cut(s)	90
SspMI	CTAG	1 cut(s)	410
TaaI	ACNGT	1 cut(s)	290
TaqII	GACCGA	1 cut(s)	374
TasI	AATT	1 cut(s)	300
TatI	WGTACW	1 cut(s)	82
TfiI	GAWTC	1 cut(s)	401
Tru1I	TTAA	1 cut(s)	366
Tru9I	TTAA	1 cut(s)	366
TseI	GCWGC	2 cut(s)	47, 389
TspDTI	ATGAA	2 cut(s)	33, 393
VpaK11BI	GGWCC	1 cut(s)	325
XceI	RCATGY	1 cut(s)	210
XmnI	GAANNNNTTC	1 cut(s)	33
XspI	CTAG	1 cut(s)	410
Zsp2I	ATGCAT	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.