FvH4_1g25611

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0002398
Physical Location & Seq
Forward (+)
17443477 .. 17443920
444 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g25611.t1

Sequence Viewer

Length: 300 bp
ATGGCCATTTTTTCAGCTCTTGTCAGTTGCTTCATGCCTGCACCATCCTCATCACAGGTTTCCGATGATGCAGGAAATGTTGGTATTGCAAAAGCCGCTGTTTCCTCAAAAGATTCCAACAGAAAGAGGTGTGATATATTGTGTGTCGACATTCCTGTCGTGATTCATGGAATATGGACCGGAGGAGTTTCCTTCACAAGGCCAGCAGCTCACGACGAGCTCTCTCTGGAGCTGATGAGCTGCTGGTCTTGTTCGATCACTGGTGGCCGTGTCGCAAGGCTGCAACTCGATCAGGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

100

Amino Acids

10.43

Weight (kDa)

6.01

Isoelectric Point (pI)

56.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 155
AccI GTMKAC 1 cut(s) 147
AciI CCGC 1 cut(s) 96
AcoI YGGCCR 2 cut(s) 3, 265
AfiI CCNNNNNNNGG 1 cut(s) 198
AluBI AGCT 5 cut(s) 17, 209, 220, 232, 240
AluI AGCT 5 cut(s) 17, 209, 220, 232, 240
Alw21I GWGCWC 1 cut(s) 222
AoxI GGCC 4 cut(s) 3, 200, 265, 294
ApeKI GCWGC 3 cut(s) 206, 240, 280
AspS9I GGNCC 1 cut(s) 177
AvaII GGWCC 1 cut(s) 177
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 1 cut(s) 222
Bbv12I GWGCWC 1 cut(s) 222
BbvI GCAGC 3 cut(s) 218, 227, 267
BccI CCATC 1 cut(s) 52
BceAI ACGGC 1 cut(s) 252
BisI GCNGC 4 cut(s) 96, 207, 241, 281
BlsI GCNGC 4 cut(s) 97, 208, 242, 282
Bme18I GGWCC 1 cut(s) 177
BmgT120I GGNCC 1 cut(s) 177
BmsI GCATC 1 cut(s) 58
BpmI CTGGAG 1 cut(s) 248
BsaWI WCCGGW 1 cut(s) 179
Bsc4I CCNNNNNNNGG 1 cut(s) 198
Bse1I ACTGG 1 cut(s) 265
BseGI GGATG 1 cut(s) 44
BseLI CCNNNNNNNGG 1 cut(s) 198
BseNI ACTGG 1 cut(s) 265
BseRI GAGGAG 1 cut(s) 198
BseXI GCAGC 3 cut(s) 218, 227, 267
BsgI GTGCAG 1 cut(s) 24
BshFI GGCC 4 cut(s) 5, 202, 267, 296
BsiHKAI GWGCWC 1 cut(s) 222
BsiSI CCGG 1 cut(s) 180
BslI CCNNNNNNNGG 1 cut(s) 198
BsnI GGCC 4 cut(s) 5, 202, 267, 296
Bsp1286I GDGCHC 1 cut(s) 222
Bsp143I GATC 2 cut(s) 255, 289
BspACI CCGC 1 cut(s) 96
BspANI GGCC 4 cut(s) 5, 202, 267, 296
BsrI ACTGG 1 cut(s) 265
BssMI GATC 2 cut(s) 255, 289
BstC8I GCNNGC 2 cut(s) 39, 204
BstENI CCTNNNNNAGG 1 cut(s) 196
BstF5I GGATG 1 cut(s) 44
BstKTI GATC 2 cut(s) 258, 292
BstMBI GATC 2 cut(s) 255, 289
BstMWI GCNNNNNNNGC 1 cut(s) 95
BstV1I GCAGC 3 cut(s) 218, 227, 267
BsuRI GGCC 4 cut(s) 5, 202, 267, 296
BtsCI GGATG 1 cut(s) 44
BtsIMutI CAGTG 1 cut(s) 258
Cac8I GCNNGC 2 cut(s) 39, 204
Cfr13I GGNCC 1 cut(s) 177
CviAII CATG 2 cut(s) 34, 167
DpnI GATC 2 cut(s) 257, 291
DpnII GATC 2 cut(s) 255, 289
DrdI GACNNNNNNGTC 1 cut(s) 155
DseDI GACNNNNNNGTC 1 cut(s) 155
EaeI YGGCCR 2 cut(s) 3, 265
Ecl136II GAGCTC 1 cut(s) 220
Eco147I AGGCCT 1 cut(s) 296
Eco24I GRGCYC 1 cut(s) 222
Eco47I GGWCC 1 cut(s) 177
Eco53kI GAGCTC 1 cut(s) 220
EcoICRI GAGCTC 1 cut(s) 220
EcoNI CCTNNNNNAGG 1 cut(s) 196
EcoT38I GRGCYC 1 cut(s) 222
FaeI CATG 2 cut(s) 37, 170
FaiI YATR 4 cut(s) 35, 137, 168, 175
FatI CATG 2 cut(s) 33, 166
FblI GTMKAC 1 cut(s) 147
Fnu4HI GCNGC 4 cut(s) 96, 207, 241, 281
FokI GGATG 1 cut(s) 31
FriOI GRGCYC 1 cut(s) 222
Fsp4HI GCNGC 4 cut(s) 96, 207, 241, 281
GluI GCNGC 4 cut(s) 96, 207, 241, 281
GsuI CTGGAG 1 cut(s) 248
HaeIII GGCC 4 cut(s) 5, 202, 267, 296
HapII CCGG 1 cut(s) 180
Hin1II CATG 2 cut(s) 37, 170
HincII GTYRAC 1 cut(s) 148
HindII GTYRAC 1 cut(s) 148
HinfI GANTC 2 cut(s) 113, 163
HpaII CCGG 1 cut(s) 180
Hpy166II GTNNAC 1 cut(s) 148
Hpy188I TCNGA 1 cut(s) 64
Hpy188III TCNNGA 3 cut(s) 160, 212, 227
Hpy8I GTNNAC 1 cut(s) 148
Hpy99I CGWCG 1 cut(s) 218
HpyAV CCTTC 1 cut(s) 202
HpyCH4V TGCA 4 cut(s) 41, 71, 89, 283
HpyF10VI GCNNNNNNNGC 1 cut(s) 95
Hsp92II CATG 2 cut(s) 37, 170
Kzo9I GATC 2 cut(s) 255, 289
LmnI GCTCC 1 cut(s) 229
Lsp1109I GCAGC 3 cut(s) 218, 227, 267
LweI GCATC 1 cut(s) 58
MalI GATC 2 cut(s) 257, 291
MboI GATC 2 cut(s) 255, 289
MhlI GDGCHC 1 cut(s) 222
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 141
MnlI CCTC 4 cut(s) 58, 115, 120, 176
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 98
MspI CCGG 1 cut(s) 180
MwoI GCNNNNNNNGC 1 cut(s) 95
NdeII GATC 2 cut(s) 255, 289
NlaIII CATG 2 cut(s) 37, 170
PceI AGGCCT 1 cut(s) 296
PfeI GAWTC 2 cut(s) 113, 163
PkrI GCNGC 4 cut(s) 97, 208, 242, 282
Psp124BI GAGCTC 1 cut(s) 222
PspPI GGNCC 1 cut(s) 177
SacI GAGCTC 1 cut(s) 222
SalI GTCGAC 1 cut(s) 146
SatI GCNGC 4 cut(s) 96, 207, 241, 281
Sau3AI GATC 2 cut(s) 255, 289
Sau96I GGNCC 1 cut(s) 177
SduI GDGCHC 1 cut(s) 222
SetI ASST 7 cut(s) 19, 60, 131, 211, 222, 234, 242
SfaNI GCATC 1 cut(s) 58
SinI GGWCC 1 cut(s) 177
SseBI AGGCCT 1 cut(s) 296
SsiI CCGC 1 cut(s) 96
SstI GAGCTC 1 cut(s) 222
StuI AGGCCT 1 cut(s) 296
TaqI TCGA 3 cut(s) 147, 254, 288
TauI GCSGC 1 cut(s) 98
TfiI GAWTC 2 cut(s) 113, 163
TscAI CASTG 1 cut(s) 265
TseI GCWGC 3 cut(s) 206, 240, 280
TspDTI ATGAA 2 cut(s) 22, 155
TspRI CASTG 1 cut(s) 265
VpaK11BI GGWCC 1 cut(s) 177
XagI CCTNNNNNAGG 1 cut(s) 196
XmiI GTMKAC 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.