Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002398

Physical Location & Seq

Genomic Coordinates Forward (+)

25864154 .. 25868487

Gene Structure 4334 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0248000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGACAGCCTCTGCTCTAACCATTACTCCAAAGCTTCACCCCCACATTCAGACCCTTAATCCCAAAACCTCATTCCCTTCTTCTTCCTGTTCATGTTCTTGTTCCTCAGCAACTGAAAACAATGCCAGGCTAACTTGGGAATCAAATGTTGTGAGTAAAAGGAGTGTGTTCAATGTGGGTATTGGCCTCTTAGCAGCTTCAGTTGTGGCATTGTCACCTTTGGAAGCTAATGCGACGAGAGTTGAGTACTACGCCACCGTGGGAGAGCCTCTGTGTGAGATGAACTTTGCTCGTTCTGGGCTTGGTTTCTGTGATCTGTCAGTCGGGTCGGGTGTACAAGCTCCTCGTGGTGAGCTCATCAATATTCACTACACTGCAAGATTCGGTGATGGGACAGTCTTTGACAGCAGCTACAAACGTGGTAGACCTCTCACTATGCGCATTGGTGTTGGCAAGATTCTAGGGCAAATGTTTCTTGTACTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0016020 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

161

Amino Acids

17.19

Weight (kDa)

8.93

Isoelectric Point (pI)

46.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FKBP_C	PF00254	114 - 154	1.8e-07	FKBP-type peptidyl-prolyl cis-trans isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002398)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g25611
malus_domestica	MD07G1004800.v1.1
prunus_persica	Prupe.2G006100_v2.0.a1 Prupe.2G006200_v2.0.a1 Prupe.2G006300_v2.0.a1 Prupe.2G006400_v2.0.a1 Prupe.2G006700_v2.0.a1 Prupe.2G006800_v2.0.a1 Prupe.2G006900_v2.0.a1
pyrus_communis	pycom02g26560 pycom07g00370
rosa_chinensis	RchiOBHm_Chr1g0314271 RchiOBHm_Chr1g0314291 RchiOBHm_Chr2g0123781 RchiOBHm_Chr2g0123791 RchiOBHm_Chr2g0123801 RchiOBHm_Chr2g0123821 RchiOBHm_Chr2g0123871 RchiOBHm_Chr2g0123881 RchiOBHm_Chr2g0123891
rosa_laevigata	RLG00000018776
rosa_multiflora	Rmu_sc0003270.1_g000037
rosa_roxburghii	Rroxscaffold_2G00120260 Rroxscaffold_2G00120270 Rroxscaffold_2G00120290 Rroxscaffold_2G00120310 Rroxscaffold_2G00120320 Rroxscaffold_2G00120330 Rroxscaffold_2G00120340 Rroxscaffold_4G00331990
rosa_rugosa	Rorug02G0248000 Rorug02G0248200
rosa_samantha	Rh2BG315500 Rh2CG293300 Rh2DG330700
rosa_wichuraiana	Rw1G000430 Rw2G024630 Rw2G024640 Rw2G024650 Rw2G024670 Rw2G024680 Rw2G024700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	440
AccI	GTMKAC	1 cut(s)	424
AcuI	CTGAAG	1 cut(s)	183
AfaI	GTAC	3 cut(s)	248, 336, 480
AgsI	TTSAA	1 cut(s)	172
AjnI	CCWGG	1 cut(s)	125
AjuI	GAANNNNNNNTTGG	2 cut(s)	56, 88
AluBI	AGCT	6 cut(s)	34, 197, 227, 341, 355, 411
AluI	AGCT	6 cut(s)	34, 197, 227, 341, 355, 411
Alw21I	GWGCWC	1 cut(s)	357
AlwNI	CAGNNNCTG	2 cut(s)	11, 113
AoxI	GGCC	1 cut(s)	184
ApeKI	GCWGC	2 cut(s)	194, 408
AspLEI	GCGC	1 cut(s)	441
AsuHPI	GGTGA	4 cut(s)	29, 207, 362, 398
BanII	GRGCYC	1 cut(s)	357
BauI	CACGAG	1 cut(s)	345
Bbv12I	GWGCWC	1 cut(s)	357
BbvCI	CCTCAGC	1 cut(s)	106
BbvI	GCAGC	2 cut(s)	206, 420
BccI	CCATC	1 cut(s)	383
BciT130I	CCWGG	1 cut(s)	127
BfaI	CTAG	2 cut(s)	461, 484
BisI	GCNGC	2 cut(s)	195, 409
BlsI	GCNGC	2 cut(s)	196, 410
BmcAI	AGTACT	1 cut(s)	248
Bme1390I	CCNGG	1 cut(s)	127
BmrFI	CCNGG	1 cut(s)	127
Bpu10I	CCTNAGC	1 cut(s)	106
BsaJI	CCNNGG	1 cut(s)	258
BsaXI	ACNNNNNCTCC	2 cut(s)	10, 40
BseBI	CCWGG	1 cut(s)	127
BseDI	CCNNGG	1 cut(s)	258
BseMII	CTCAG	1 cut(s)	120
BseRI	GAGGAG	1 cut(s)	333
BseXI	GCAGC	2 cut(s)	206, 420
BshFI	GGCC	1 cut(s)	186
BsiHKAI	GWGCWC	1 cut(s)	357
BslFI	GGGAC	1 cut(s)	406
BsmFI	GGGAC	1 cut(s)	406
BsnI	GGCC	1 cut(s)	186
Bsp1286I	GDGCHC	1 cut(s)	357
Bsp1407I	TGTACA	1 cut(s)	334
Bsp143I	GATC	1 cut(s)	313
BspANI	GGCC	1 cut(s)	186
BspCNI	CTCAG	1 cut(s)	119
BsrGI	TGTACA	1 cut(s)	334
BssECI	CCNNGG	1 cut(s)	258
BssMI	GATC	1 cut(s)	313
BssSI	CACGAG	1 cut(s)	345
Bst2BI	CACGAG	1 cut(s)	345
Bst2UI	CCWGG	1 cut(s)	127
Bst4CI	ACNGT	2 cut(s)	259, 397
BstAUI	TGTACA	1 cut(s)	334
BstDEI	CTNAG	2 cut(s)	106, 190
BstDSI	CCRYGG	1 cut(s)	258
BstHHI	GCGC	1 cut(s)	441
BstKTI	GATC	1 cut(s)	316
BstMBI	GATC	1 cut(s)	313
BstNI	CCWGG	1 cut(s)	127
BstSCI	CCNGG	1 cut(s)	125
BstV1I	GCAGC	2 cut(s)	206, 420
BsuRI	GGCC	1 cut(s)	186
BtgI	CCRYGG	1 cut(s)	258
BtsI	GCAGTG	1 cut(s)	372
BtsIMutI	CAGTG	1 cut(s)	372
CaiI	CAGNNNCTG	2 cut(s)	11, 113
CfoI	GCGC	1 cut(s)	441
Csp6I	GTAC	3 cut(s)	247, 335, 479
CviAII	CATG	1 cut(s)	93
CviQI	GTAC	3 cut(s)	247, 335, 479
DdeI	CTNAG	2 cut(s)	106, 190
DpnI	GATC	1 cut(s)	315
DpnII	GATC	1 cut(s)	313
Ecl136II	GAGCTC	1 cut(s)	355
Eco24I	GRGCYC	1 cut(s)	357
Eco53kI	GAGCTC	1 cut(s)	355
Eco57I	CTGAAG	1 cut(s)	183
EcoICRI	GAGCTC	1 cut(s)	355
EcoRII	CCWGG	1 cut(s)	125
EcoT38I	GRGCYC	1 cut(s)	357
FaeI	CATG	1 cut(s)	96
FaiI	YATR	2 cut(s)	94, 437
FaqI	GGGAC	1 cut(s)	406
FatI	CATG	1 cut(s)	92
FblI	GTMKAC	1 cut(s)	424
Fnu4HI	GCNGC	2 cut(s)	195, 409
FriOI	GRGCYC	1 cut(s)	357
Fsp4HI	GCNGC	2 cut(s)	195, 409
FspAI	RTGCGCAY	1 cut(s)	440
FspBI	CTAG	2 cut(s)	461, 484
FspI	TGCGCA	1 cut(s)	440
GlaI	GCGC	1 cut(s)	440
GluI	GCNGC	2 cut(s)	195, 409
HaeIII	GGCC	1 cut(s)	186
HhaI	GCGC	1 cut(s)	441
Hin1II	CATG	1 cut(s)	96
Hin6I	GCGC	1 cut(s)	439
HinP1I	GCGC	1 cut(s)	439
HindIII	AAGCTT	1 cut(s)	32
HinfI	GANTC	3 cut(s)	140, 381, 457
HphI	GGTGA	4 cut(s)	29, 207, 362, 398
Hpy166II	GTNNAC	2 cut(s)	335, 425
Hpy188I	TCNGA	1 cut(s)	51
Hpy8I	GTNNAC	2 cut(s)	335, 425
Hpy99I	CGWCG	1 cut(s)	238
HpyAV	CCTTC	1 cut(s)	87
HpyCH4III	ACNGT	2 cut(s)	259, 397
HpyCH4IV	ACGT	1 cut(s)	418
HpyCH4V	TGCA	1 cut(s)	377
HpyF3I	CTNAG	2 cut(s)	106, 190
HpySE526I	ACGT	1 cut(s)	418
Hsp92II	CATG	1 cut(s)	96
HspAI	GCGC	1 cut(s)	439
Kzo9I	GATC	1 cut(s)	313
LmnI	GCTCC	1 cut(s)	346
LpnPI	CCDG	4 cut(s)	100, 112, 139, 282
Lsp1109I	GCAGC	2 cut(s)	206, 420
MaeI	CTAG	2 cut(s)	461, 484
MaeII	ACGT	1 cut(s)	418
MaeIII	GTNAC	1 cut(s)	213
MalI	GATC	1 cut(s)	315
MboI	GATC	1 cut(s)	313
MboII	GAAGA	2 cut(s)	72, 75
MhlI	GDGCHC	1 cut(s)	357
MnlI	CCTC	7 cut(s)	19, 79, 115, 197, 279, 354, 438
MseI	TTAA	1 cut(s)	57
MspR9I	CCNGG	1 cut(s)	127
MvaI	CCWGG	1 cut(s)	127
NdeII	GATC	1 cut(s)	313
NlaIII	CATG	1 cut(s)	96
NmuCI	GTSAC	1 cut(s)	213
NsbI	TGCGCA	1 cut(s)	440
PfeI	GAWTC	3 cut(s)	140, 381, 457
PkrI	GCNGC	2 cut(s)	196, 410
Psp124BI	GAGCTC	1 cut(s)	357
Psp6I	CCWGG	1 cut(s)	125
PspGI	CCWGG	1 cut(s)	125
PstNI	CAGNNNCTG	2 cut(s)	11, 113
RsaI	GTAC	3 cut(s)	248, 336, 480
RsaNI	GTAC	3 cut(s)	247, 335, 479
SacI	GAGCTC	1 cut(s)	357
SaqAI	TTAA	1 cut(s)	57
SatI	GCNGC	2 cut(s)	195, 409
Sau3AI	GATC	1 cut(s)	313
ScaI	AGTACT	1 cut(s)	248
ScrFI	CCNGG	1 cut(s)	127
SduI	GDGCHC	1 cut(s)	357
SspI	AATATT	1 cut(s)	364
SspMI	CTAG	2 cut(s)	461, 484
SstI	GAGCTC	1 cut(s)	357
StyD4I	CCNGG	1 cut(s)	125
TaaI	ACNGT	2 cut(s)	259, 397
TaiI	ACGT	1 cut(s)	421
TatI	WGTACW	3 cut(s)	246, 334, 478
TfiI	GAWTC	3 cut(s)	140, 381, 457
Tru1I	TTAA	1 cut(s)	57
Tru9I	TTAA	1 cut(s)	57
TscAI	CASTG	1 cut(s)	379
TseFI	GTSAC	1 cut(s)	213
TseI	GCWGC	2 cut(s)	194, 408
Tsp45I	GTSAC	1 cut(s)	213
TspDTI	ATGAA	2 cut(s)	81, 296
TspRI	CASTG	1 cut(s)	379
XmiI	GTMKAC	1 cut(s)	424
XspI	CTAG	2 cut(s)	461, 484
ZrmI	AGTACT	1 cut(s)	248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.