Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0002398

Physical Location & Seq

Genomic Coordinates Forward (+)

33310855 .. 33330785

Gene Structure 19931 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG293300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGCCATTTTTTCAGCTCTTCTTAGTTGCTTCATCCCTTCATCATCCTCACAGGTTTCCGATGATGTAGGAAATGCTAGTATTGCAGCTGCTTCCTCAAAGGATTCCAGAAAAATTAAGTCTTCAAAATCATCATCATCAGGAGCTCCTATACATTCAGAGATGTTGAGTCTGAAAATGTCGACCGTACTTGAGACCGACTGTGCCTTGGTTGGTGGATCCGACATGGGATTCATAAAAGGGCAGCTCACGGACGTCTACGATTTAGGTCTTCTGCTGTTGGTGATGATGGCGAAATGTGCCAGTGCCGGTTTAATTAAGCCTATTCTGAATCTATTTTGGACTGTTTTGCTTCTGATGGAGATGGTACTAGGAGATATAAACTTCACCATGATCGGGAGGGCGGTGATTCGAAGTGGCAACGCCGGGGAGCAGCTGTTTTGGCTCTGGGTGTCCAGATCAATATGGCTGGCTCTGTCTTTGGGTTGTGTGTGGACCCAAGATCAAACCCGGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

172

Amino Acids

18.49

Weight (kDa)

6.54

Isoelectric Point (pI)

37.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002398)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g25611
malus_domestica	MD07G1004800.v1.1
prunus_persica	Prupe.2G006100_v2.0.a1 Prupe.2G006200_v2.0.a1 Prupe.2G006300_v2.0.a1 Prupe.2G006400_v2.0.a1 Prupe.2G006700_v2.0.a1 Prupe.2G006800_v2.0.a1 Prupe.2G006900_v2.0.a1
pyrus_communis	pycom02g26560 pycom07g00370
rosa_chinensis	RchiOBHm_Chr1g0314271 RchiOBHm_Chr1g0314291 RchiOBHm_Chr2g0123781 RchiOBHm_Chr2g0123791 RchiOBHm_Chr2g0123801 RchiOBHm_Chr2g0123821 RchiOBHm_Chr2g0123871 RchiOBHm_Chr2g0123881 RchiOBHm_Chr2g0123891
rosa_laevigata	RLG00000018776
rosa_multiflora	Rmu_sc0003270.1_g000037
rosa_roxburghii	Rroxscaffold_2G00120260 Rroxscaffold_2G00120270 Rroxscaffold_2G00120290 Rroxscaffold_2G00120310 Rroxscaffold_2G00120320 Rroxscaffold_2G00120330 Rroxscaffold_2G00120340 Rroxscaffold_4G00331990
rosa_rugosa	Rorug02G0248000 Rorug02G0248200
rosa_samantha	Rh2BG315500 Rh2CG293300 Rh2DG330700
rosa_wichuraiana	Rw1G000430 Rw2G024630 Rw2G024640 Rw2G024650 Rw2G024670 Rw2G024680 Rw2G024700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	258
AccI	GTMKAC	2 cut(s)	182, 258
AciI	CCGC	1 cut(s)	404
AclWI	GGATC	2 cut(s)	213, 226
AcoI	YGGCCR	1 cut(s)	3
AcyI	GRCGYC	1 cut(s)	255
AfaI	GTAC	2 cut(s)	189, 369
AfiI	CCNNNNNNNGG	1 cut(s)	396
AgsI	TTSAA	1 cut(s)	126
AluBI	AGCT	5 cut(s)	17, 89, 146, 247, 436
AluI	AGCT	5 cut(s)	17, 89, 146, 247, 436
Alw21I	GWGCWC	1 cut(s)	148
Alw26I	GTCTC	1 cut(s)	188
AlwI	GGATC	2 cut(s)	213, 226
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	4 cut(s)	86, 89, 244, 433
AspS9I	GGNCC	1 cut(s)	495
AsuC2I	CCSGG	2 cut(s)	427, 511
AsuHPI	GGTGA	3 cut(s)	295, 379, 418
AsuII	TTCGAA	1 cut(s)	412
AvaII	GGWCC	1 cut(s)	495
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	218
BanII	GRGCYC	1 cut(s)	148
BbsI	GAAGAC	2 cut(s)	114, 263
Bbv12I	GWGCWC	1 cut(s)	148
BbvI	GCAGC	4 cut(s)	76, 98, 256, 445
BccI	CCATC	3 cut(s)	283, 352, 358
BcnI	CCSGG	2 cut(s)	427, 511
BcoDI	GTCTC	1 cut(s)	188
BfaI	CTAG	2 cut(s)	78, 371
BisI	GCNGC	4 cut(s)	87, 90, 245, 434
BlsI	GCNGC	4 cut(s)	88, 91, 246, 435
Bme1390I	CCNGG	2 cut(s)	427, 511
Bme18I	GGWCC	1 cut(s)	495
BmgT120I	GGNCC	1 cut(s)	495
BmiI	GGNNCC	2 cut(s)	220, 497
BmrFI	CCNGG	2 cut(s)	427, 511
BpiI	GAAGAC	2 cut(s)	114, 263
Bpu14I	TTCGAA	1 cut(s)	412
BpuEI	CTTGAG	1 cut(s)	212
BpuMI	CCSGG	2 cut(s)	427, 511
BsaHI	GRCGYC	1 cut(s)	255
BsaI	GGTCTC	1 cut(s)	188
BsaJI	CCNNGG	2 cut(s)	207, 426
BsaXI	ACNNNNNCTCC	2 cut(s)	422, 452
Bsc4I	CCNNNNNNNGG	1 cut(s)	396
Bse118I	RCCGGY	1 cut(s)	308
Bse1I	ACTGG	1 cut(s)	303
BseDI	CCNNGG	2 cut(s)	207, 426
BseGI	GGATG	2 cut(s)	33, 44
BseLI	CCNNNNNNNGG	1 cut(s)	396
BseNI	ACTGG	1 cut(s)	303
BseXI	GCAGC	4 cut(s)	76, 98, 256, 445
Bsh1285I	CGRYCG	1 cut(s)	186
BshFI	GGCC	1 cut(s)	5
BsiEI	CGRYCG	1 cut(s)	186
BsiHKAI	GWGCWC	1 cut(s)	148
BsiSI	CCGG	3 cut(s)	309, 426, 511
BslI	CCNNNNNNNGG	1 cut(s)	396
BsmAI	GTCTC	1 cut(s)	188
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	1 cut(s)	188
Bsp119I	TTCGAA	1 cut(s)	412
Bsp1286I	GDGCHC	1 cut(s)	148
Bsp143I	GATC	4 cut(s)	218, 393, 458, 502
BspACI	CCGC	1 cut(s)	404
BspANI	GGCC	1 cut(s)	5
BspLI	GGNNCC	2 cut(s)	220, 497
BspPI	GGATC	2 cut(s)	213, 226
BspQI	GCTCTTC	1 cut(s)	24
BspT104I	TTCGAA	1 cut(s)	412
BspTNI	GGTCTC	1 cut(s)	188
BsrFI	RCCGGY	1 cut(s)	308
BsrI	ACTGG	1 cut(s)	303
BssAI	RCCGGY	1 cut(s)	308
BssECI	CCNNGG	2 cut(s)	207, 426
BssMI	GATC	4 cut(s)	218, 393, 458, 502
BssNI	GRCGYC	1 cut(s)	255
BssT1I	CCWWGG	1 cut(s)	207
Bst4CI	ACNGT	3 cut(s)	187, 203, 346
Bst6I	CTCTTC	1 cut(s)	24
BstACI	GRCGYC	1 cut(s)	255
BstBI	TTCGAA	1 cut(s)	412
BstC8I	GCNNGC	1 cut(s)	471
BstDEI	CTNAG	1 cut(s)	23
BstF5I	GGATG	2 cut(s)	33, 44
BstKTI	GATC	4 cut(s)	221, 396, 461, 505
BstMAI	GTCTC	1 cut(s)	188
BstMBI	GATC	4 cut(s)	218, 393, 458, 502
BstMCI	CGRYCG	1 cut(s)	186
BstMWI	GCNNNNNNNGC	3 cut(s)	83, 299, 442
BstSCI	CCNGG	2 cut(s)	425, 509
BstV1I	GCAGC	4 cut(s)	76, 98, 256, 445
BstV2I	GAAGAC	2 cut(s)	114, 263
BstX2I	RGATCY	1 cut(s)	218
BstYI	RGATCY	1 cut(s)	218
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	2 cut(s)	33, 44
BtsIMutI	CAGTG	1 cut(s)	310
Cac8I	GCNNGC	1 cut(s)	471
Cfr10I	RCCGGY	1 cut(s)	308
Cfr13I	GGNCC	1 cut(s)	495
Csp6I	GTAC	2 cut(s)	188, 368
CviAII	CATG	2 cut(s)	226, 391
CviQI	GTAC	2 cut(s)	188, 368
DdeI	CTNAG	1 cut(s)	23
DpnI	GATC	4 cut(s)	220, 395, 460, 504
DpnII	GATC	4 cut(s)	218, 393, 458, 502
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	24
EarI	CTCTTC	1 cut(s)	24
Ecl136II	GAGCTC	1 cut(s)	146
Eco130I	CCWWGG	1 cut(s)	207
Eco24I	GRGCYC	1 cut(s)	148
Eco31I	GGTCTC	1 cut(s)	188
Eco47I	GGWCC	1 cut(s)	495
Eco53kI	GAGCTC	1 cut(s)	146
EcoICRI	GAGCTC	1 cut(s)	146
EcoT14I	CCWWGG	1 cut(s)	207
EcoT38I	GRGCYC	1 cut(s)	148
ErhI	CCWWGG	1 cut(s)	207
FaeI	CATG	2 cut(s)	229, 394
FaiI	YATR	6 cut(s)	152, 227, 236, 380, 392, 466
FatI	CATG	2 cut(s)	225, 390
FblI	GTMKAC	2 cut(s)	182, 258
Fnu4HI	GCNGC	4 cut(s)	87, 90, 245, 434
FokI	GGATG	2 cut(s)	20, 31
FriOI	GRGCYC	1 cut(s)	148
Fsp4HI	GCNGC	4 cut(s)	87, 90, 245, 434
FspBI	CTAG	2 cut(s)	78, 371
GluI	GCNGC	4 cut(s)	87, 90, 245, 434
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	3 cut(s)	309, 426, 511
Hin1I	GRCGYC	1 cut(s)	255
Hin1II	CATG	2 cut(s)	229, 394
HincII	GTYRAC	1 cut(s)	183
HindII	GTYRAC	1 cut(s)	183
HinfI	GANTC	5 cut(s)	104, 169, 231, 331, 409
HpaII	CCGG	3 cut(s)	309, 426, 511
HphI	GGTGA	3 cut(s)	295, 379, 418
Hpy166II	GTNNAC	3 cut(s)	183, 259, 495
Hpy188I	TCNGA	6 cut(s)	61, 160, 174, 223, 330, 357
Hpy188III	TCNNGA	4 cut(s)	108, 141, 397, 456
Hpy8I	GTNNAC	3 cut(s)	183, 259, 495
HpyAV	CCTTC	1 cut(s)	48
HpyCH4III	ACNGT	3 cut(s)	187, 203, 346
HpyCH4IV	ACGT	1 cut(s)	255
HpyCH4V	TGCA	1 cut(s)	86
HpyF10VI	GCNNNNNNNGC	3 cut(s)	83, 299, 442
HpyF3I	CTNAG	1 cut(s)	23
HpySE526I	ACGT	1 cut(s)	255
Hsp92I	GRCGYC	1 cut(s)	255
Hsp92II	CATG	2 cut(s)	229, 394
Kzo9I	GATC	4 cut(s)	218, 393, 458, 502
LguI	GCTCTTC	1 cut(s)	24
LmnI	GCTCC	3 cut(s)	143, 151, 430
LpnPI	CCDG	9 cut(s)	38, 121, 126, 316, 322, 433, 439, 455, 469
Lsp1109I	GCAGC	4 cut(s)	76, 98, 256, 445
MaeI	CTAG	2 cut(s)	78, 371
MaeII	ACGT	1 cut(s)	255
MalI	GATC	4 cut(s)	220, 395, 460, 504
MboI	GATC	4 cut(s)	218, 393, 458, 502
MboII	GAAGA	3 cut(s)	11, 114, 263
MflI	RGATCY	1 cut(s)	218
MhlI	GDGCHC	1 cut(s)	148
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	114, 315
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	178
MmeI	TCCRAC	1 cut(s)	246
MnlI	CCTC	3 cut(s)	58, 106, 393
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	117, 314, 318
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	2 cut(s)	89, 436
MspI	CCGG	3 cut(s)	309, 426, 511
MspR9I	CCNGG	2 cut(s)	427, 511
MwoI	GCNNNNNNNGC	3 cut(s)	83, 299, 442
NciI	CCSGG	2 cut(s)	427, 511
NdeII	GATC	4 cut(s)	218, 393, 458, 502
NlaIII	CATG	2 cut(s)	229, 394
NlaIV	GGNNCC	2 cut(s)	220, 497
NspV	TTCGAA	1 cut(s)	412
PacI	TTAATTAA	1 cut(s)	318
PciSI	GCTCTTC	1 cut(s)	24
PfeI	GAWTC	4 cut(s)	104, 231, 331, 409
PkrI	GCNGC	4 cut(s)	88, 91, 246, 435
PleI	GAGTC	1 cut(s)	177
PpsI	GAGTC	1 cut(s)	177
Psp124BI	GAGCTC	1 cut(s)	148
PspN4I	GGNNCC	2 cut(s)	220, 497
PspPI	GGNCC	1 cut(s)	495
PsuI	RGATCY	1 cut(s)	218
PvuII	CAGCTG	2 cut(s)	89, 436
RsaI	GTAC	2 cut(s)	189, 369
RsaNI	GTAC	2 cut(s)	188, 368
SacI	GAGCTC	1 cut(s)	148
SalI	GTCGAC	1 cut(s)	181
SapI	GCTCTTC	1 cut(s)	24
SaqAI	TTAA	3 cut(s)	117, 314, 318
SatI	GCNGC	4 cut(s)	87, 90, 245, 434
Sau3AI	GATC	4 cut(s)	218, 393, 458, 502
Sau96I	GGNCC	1 cut(s)	495
SchI	GAGTC	1 cut(s)	178
ScrFI	CCNGG	2 cut(s)	427, 511
SduI	GDGCHC	1 cut(s)	148
SetI	ASST	8 cut(s)	19, 57, 91, 148, 249, 258, 271, 438
SfuI	TTCGAA	1 cut(s)	412
SinI	GGWCC	1 cut(s)	495
SmlI	CTYRAG	1 cut(s)	191
SmoI	CTYRAG	1 cut(s)	191
Sse9I	AATT	2 cut(s)	114, 315
SsiI	CCGC	1 cut(s)	404
SspMI	CTAG	2 cut(s)	78, 371
SstI	GAGCTC	1 cut(s)	148
StyD4I	CCNGG	2 cut(s)	425, 509
StyI	CCWWGG	1 cut(s)	207
TaaI	ACNGT	3 cut(s)	187, 203, 346
TaiI	ACGT	1 cut(s)	258
TaqI	TCGA	2 cut(s)	182, 412
TaqII	GACCGA	1 cut(s)	212
TasI	AATT	2 cut(s)	114, 315
TfiI	GAWTC	4 cut(s)	104, 231, 331, 409
Tru1I	TTAA	3 cut(s)	117, 314, 318
Tru9I	TTAA	3 cut(s)	117, 314, 318
TscAI	CASTG	1 cut(s)	310
TseI	GCWGC	4 cut(s)	86, 89, 244, 433
TspDTI	ATGAA	3 cut(s)	22, 30, 223
TspGWI	ACGGA	1 cut(s)	266
TspRI	CASTG	1 cut(s)	310
VpaK11BI	GGWCC	1 cut(s)	495
XmiI	GTMKAC	2 cut(s)	182, 258
XspI	CTAG	2 cut(s)	78, 371
ZraI	GACGTC	1 cut(s)	256

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.