Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0002398

Physical Location & Seq

Genomic Coordinates Forward (+)

41984232 .. 42020644

Gene Structure 36413 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG330700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGCCATTTTTTCAGCTCTTCTTAGTTGCTTCATCCCTTCATCATCGTCACAGGTTTCCGATGATGTAGGAAATGCTAGTATTGCAGCTGCTTGCTCAAAGGATTCCAGAAAAACTAAGTCTTCAAAATCATCATCATCAGGAGCTCCTATATTGCTCGATCAGCTAAAACCACGCACTACTAATTACCAACTAATGGCCATTTTTTCAGCTCTTCTAAGTTGCTTCATCCCTTCATCATCGCCACAGGTTTCTGATGATGCAGGAAATGCTGGTGTTGCGAAAGCTCCTTCCTCAAAAGATTCCAGAAAGATACAACTTGCTGGAAGGCGCTATACCACCAACCTTGGGTTCACTAGTGAATCTTCGGCAACTCATTCGGAGATGTTGAGTTTGAAAATGTCGACCGTACTCGAGACCGACTACGCCTTGGTTGGTGGATCCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

149

Amino Acids

15.51

Weight (kDa)

8.84

Isoelectric Point (pI)

56.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002398)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g25611
malus_domestica	MD07G1004800.v1.1
prunus_persica	Prupe.2G006100_v2.0.a1 Prupe.2G006200_v2.0.a1 Prupe.2G006300_v2.0.a1 Prupe.2G006400_v2.0.a1 Prupe.2G006700_v2.0.a1 Prupe.2G006800_v2.0.a1 Prupe.2G006900_v2.0.a1
pyrus_communis	pycom02g26560 pycom07g00370
rosa_chinensis	RchiOBHm_Chr1g0314271 RchiOBHm_Chr1g0314291 RchiOBHm_Chr2g0123781 RchiOBHm_Chr2g0123791 RchiOBHm_Chr2g0123801 RchiOBHm_Chr2g0123821 RchiOBHm_Chr2g0123871 RchiOBHm_Chr2g0123881 RchiOBHm_Chr2g0123891
rosa_laevigata	RLG00000018776
rosa_multiflora	Rmu_sc0003270.1_g000037
rosa_roxburghii	Rroxscaffold_2G00120260 Rroxscaffold_2G00120270 Rroxscaffold_2G00120290 Rroxscaffold_2G00120310 Rroxscaffold_2G00120320 Rroxscaffold_2G00120330 Rroxscaffold_2G00120340 Rroxscaffold_4G00331990
rosa_rugosa	Rorug02G0248000 Rorug02G0248200
rosa_samantha	Rh2BG315500 Rh2CG293300 Rh2DG330700
rosa_wichuraiana	Rw1G000430 Rw2G024630 Rw2G024640 Rw2G024650 Rw2G024670 Rw2G024680 Rw2G024700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	196
AccI	GTMKAC	1 cut(s)	404
AclWI	GGATC	2 cut(s)	435, 448
AcoI	YGGCCR	2 cut(s)	3, 198
AfaI	GTAC	1 cut(s)	411
AfiI	CCNNNNNNNGG	2 cut(s)	196, 348
AgsI	TTSAA	2 cut(s)	126, 397
AhlI	ACTAGT	1 cut(s)	356
AjuI	GAANNNNNNNTTGG	2 cut(s)	335, 367
AluBI	AGCT	6 cut(s)	17, 89, 146, 166, 212, 287
AluI	AGCT	6 cut(s)	17, 89, 146, 166, 212, 287
Alw21I	GWGCWC	1 cut(s)	148
Alw26I	GTCTC	1 cut(s)	410
AlwI	GGATC	2 cut(s)	435, 448
Ama87I	CYCGRG	1 cut(s)	413
AoxI	GGCC	2 cut(s)	3, 198
ApeKI	GCWGC	2 cut(s)	86, 89
AspLEI	GCGC	1 cut(s)	333
AvaI	CYCGRG	1 cut(s)	413
BalI	TGGCCA	2 cut(s)	5, 200
BamHI	GGATCC	1 cut(s)	440
BanII	GRGCYC	1 cut(s)	148
BarI	GAAGNNNNNNTAC	2 cut(s)	319, 351
BbsI	GAAGAC	1 cut(s)	114
Bbv12I	GWGCWC	1 cut(s)	148
BbvI	GCAGC	2 cut(s)	76, 98
BcgI	CGANNNNNNTGC	2 cut(s)	360, 394
BcoDI	GTCTC	1 cut(s)	410
BcuI	ACTAGT	1 cut(s)	356
BfaI	CTAG	2 cut(s)	78, 357
BfoI	RGCGCY	1 cut(s)	334
BisI	GCNGC	2 cut(s)	87, 90
BlsI	GCNGC	2 cut(s)	88, 91
BmeT110I	CYCGRG	1 cut(s)	413
BmiI	GGNNCC	1 cut(s)	442
BmsI	GCATC	1 cut(s)	250
BpiI	GAAGAC	1 cut(s)	114
BsaI	GGTCTC	1 cut(s)	410
BsaJI	CCNNGG	2 cut(s)	346, 429
Bsc4I	CCNNNNNNNGG	2 cut(s)	196, 348
BseDI	CCNNGG	2 cut(s)	346, 429
BseGI	GGATG	2 cut(s)	33, 228
BseLI	CCNNNNNNNGG	2 cut(s)	196, 348
BseXI	GCAGC	2 cut(s)	76, 98
Bsh1285I	CGRYCG	1 cut(s)	408
BshFI	GGCC	2 cut(s)	5, 200
BsiEI	CGRYCG	1 cut(s)	408
BsiHKAI	GWGCWC	1 cut(s)	148
BsiHKCI	CYCGRG	1 cut(s)	413
BslI	CCNNNNNNNGG	2 cut(s)	196, 348
BsmAI	GTCTC	1 cut(s)	410
BsnI	GGCC	2 cut(s)	5, 200
Bso31I	GGTCTC	1 cut(s)	410
BsoBI	CYCGRG	1 cut(s)	413
Bsp1286I	GDGCHC	1 cut(s)	148
Bsp143I	GATC	2 cut(s)	160, 440
BspANI	GGCC	2 cut(s)	5, 200
BspLI	GGNNCC	1 cut(s)	442
BspPI	GGATC	2 cut(s)	435, 448
BspQI	GCTCTTC	2 cut(s)	24, 219
BspTNI	GGTCTC	1 cut(s)	410
BssECI	CCNNGG	2 cut(s)	346, 429
BssMI	GATC	2 cut(s)	160, 440
BssT1I	CCWWGG	2 cut(s)	346, 429
Bst4CI	ACNGT	1 cut(s)	409
Bst6I	CTCTTC	2 cut(s)	24, 219
BstAPI	GCANNNNNTGC	1 cut(s)	269
BstC8I	GCNNGC	1 cut(s)	94
BstDEI	CTNAG	3 cut(s)	23, 117, 218
BstF5I	GGATG	2 cut(s)	33, 228
BstH2I	RGCGCY	1 cut(s)	334
BstHHI	GCGC	1 cut(s)	333
BstKTI	GATC	2 cut(s)	163, 443
BstMAI	GTCTC	1 cut(s)	410
BstMBI	GATC	2 cut(s)	160, 440
BstMCI	CGRYCG	1 cut(s)	408
BstMWI	GCNNNNNNNGC	4 cut(s)	83, 163, 269, 278
BstV1I	GCAGC	2 cut(s)	76, 98
BstV2I	GAAGAC	1 cut(s)	114
BstX2I	RGATCY	1 cut(s)	440
BstYI	RGATCY	1 cut(s)	440
BsuRI	GGCC	2 cut(s)	5, 200
BtgZI	GCGATG	1 cut(s)	225
BtsCI	GGATG	2 cut(s)	33, 228
Cac8I	GCNNGC	1 cut(s)	94
CfoI	GCGC	1 cut(s)	333
Csp6I	GTAC	1 cut(s)	410
CspCI	CAANNNNNGTGG	2 cut(s)	328, 363
CviJI	RGCY	8 cut(s)	5, 17, 89, 146, 166, 200, 212, 287
CviKI_1	RGCY	8 cut(s)	5, 17, 89, 146, 166, 200, 212, 287
CviQI	GTAC	1 cut(s)	410
DdeI	CTNAG	3 cut(s)	23, 117, 218
DpnI	GATC	2 cut(s)	162, 442
DpnII	GATC	2 cut(s)	160, 440
EaeI	YGGCCR	2 cut(s)	3, 198
Eam1104I	CTCTTC	2 cut(s)	24, 219
EarI	CTCTTC	2 cut(s)	24, 219
Ecl136II	GAGCTC	1 cut(s)	146
Eco130I	CCWWGG	2 cut(s)	346, 429
Eco24I	GRGCYC	1 cut(s)	148
Eco31I	GGTCTC	1 cut(s)	410
Eco53kI	GAGCTC	1 cut(s)	146
Eco88I	CYCGRG	1 cut(s)	413
EcoICRI	GAGCTC	1 cut(s)	146
EcoT14I	CCWWGG	2 cut(s)	346, 429
EcoT38I	GRGCYC	1 cut(s)	148
ErhI	CCWWGG	2 cut(s)	346, 429
FaiI	YATR	2 cut(s)	152, 336
FblI	GTMKAC	1 cut(s)	404
Fnu4HI	GCNGC	2 cut(s)	87, 90
FokI	GGATG	2 cut(s)	20, 215
FriOI	GRGCYC	1 cut(s)	148
Fsp4HI	GCNGC	2 cut(s)	87, 90
FspBI	CTAG	2 cut(s)	78, 357
GlaI	GCGC	1 cut(s)	332
GluI	GCNGC	2 cut(s)	87, 90
HaeII	RGCGCY	1 cut(s)	334
HaeIII	GGCC	2 cut(s)	5, 200
HhaI	GCGC	1 cut(s)	333
Hin6I	GCGC	1 cut(s)	331
HinP1I	GCGC	1 cut(s)	331
HincII	GTYRAC	1 cut(s)	405
HindII	GTYRAC	1 cut(s)	405
HinfI	GANTC	3 cut(s)	104, 302, 362
Hpy166II	GTNNAC	2 cut(s)	354, 405
Hpy188I	TCNGA	3 cut(s)	61, 256, 382
Hpy188III	TCNNGA	4 cut(s)	108, 141, 306, 415
Hpy8I	GTNNAC	2 cut(s)	354, 405
HpyAV	CCTTC	4 cut(s)	48, 243, 300, 321
HpyCH4III	ACNGT	1 cut(s)	409
HpyCH4V	TGCA	2 cut(s)	86, 263
HpyF10VI	GCNNNNNNNGC	4 cut(s)	83, 163, 269, 278
HpyF3I	CTNAG	3 cut(s)	23, 117, 218
HspAI	GCGC	1 cut(s)	331
Kzo9I	GATC	2 cut(s)	160, 440
LguI	GCTCTTC	2 cut(s)	24, 219
LmnI	GCTCC	3 cut(s)	143, 151, 292
LpnPI	CCDG	8 cut(s)	38, 121, 126, 233, 249, 258, 309, 319
Lsp1109I	GCAGC	2 cut(s)	76, 98
LweI	GCATC	1 cut(s)	250
MaeI	CTAG	2 cut(s)	78, 357
MaeIII	GTNAC	1 cut(s)	48
MalI	GATC	2 cut(s)	162, 442
MboI	GATC	2 cut(s)	160, 440
MboII	GAAGA	4 cut(s)	11, 114, 206, 357
MflI	RGATCY	1 cut(s)	440
MhlI	GDGCHC	1 cut(s)	148
MlsI	TGGCCA	2 cut(s)	5, 200
MluCI	AATT	1 cut(s)	184
MluNI	TGGCCA	2 cut(s)	5, 200
MnlI	CCTC	1 cut(s)	304
Mox20I	TGGCCA	2 cut(s)	5, 200
MscI	TGGCCA	2 cut(s)	5, 200
Msp20I	TGGCCA	2 cut(s)	5, 200
MspA1I	CMGCKG	1 cut(s)	89
MwoI	GCNNNNNNNGC	4 cut(s)	83, 163, 269, 278
NdeII	GATC	2 cut(s)	160, 440
NlaIV	GGNNCC	1 cut(s)	442
NmuCI	GTSAC	1 cut(s)	48
PaeR7I	CTCGAG	1 cut(s)	413
PciSI	GCTCTTC	2 cut(s)	24, 219
PfeI	GAWTC	3 cut(s)	104, 302, 362
PflMI	CCANNNNNTGG	1 cut(s)	196
PkrI	GCNGC	2 cut(s)	88, 91
Psp124BI	GAGCTC	1 cut(s)	148
PspN4I	GGNNCC	1 cut(s)	442
PsuI	RGATCY	1 cut(s)	440
PvuII	CAGCTG	1 cut(s)	89
RsaI	GTAC	1 cut(s)	411
RsaNI	GTAC	1 cut(s)	410
SacI	GAGCTC	1 cut(s)	148
SalI	GTCGAC	1 cut(s)	403
SapI	GCTCTTC	2 cut(s)	24, 219
SatI	GCNGC	2 cut(s)	87, 90
Sau3AI	GATC	2 cut(s)	160, 440
SduI	GDGCHC	1 cut(s)	148
SetI	ASST	9 cut(s)	19, 57, 91, 148, 168, 214, 252, 289, 348
SfaNI	GCATC	1 cut(s)	250
Sfr274I	CTCGAG	1 cut(s)	413
SlaI	CTCGAG	1 cut(s)	413
SmlI	CTYRAG	1 cut(s)	413
SmoI	CTYRAG	1 cut(s)	413
SpeI	ACTAGT	1 cut(s)	356
Sse9I	AATT	1 cut(s)	184
SspMI	CTAG	2 cut(s)	78, 357
SstI	GAGCTC	1 cut(s)	148
StyI	CCWWGG	2 cut(s)	346, 429
TaaI	ACNGT	1 cut(s)	409
TaqI	TCGA	3 cut(s)	159, 404, 414
TaqII	GACCGA	1 cut(s)	434
TasI	AATT	1 cut(s)	184
TfiI	GAWTC	3 cut(s)	104, 302, 362
TseFI	GTSAC	1 cut(s)	48
TseI	GCWGC	2 cut(s)	86, 89
Tsp45I	GTSAC	1 cut(s)	48
TspDTI	ATGAA	4 cut(s)	22, 30, 217, 225
Van91I	CCANNNNNTGG	1 cut(s)	196
XhoI	CTCGAG	1 cut(s)	413
XmiI	GTMKAC	1 cut(s)	404
XspI	CTAG	2 cut(s)	78, 357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.