Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0002398

Physical Location & Seq

Genomic Coordinates Reverse (-)

663913 .. 664935

Gene Structure 1023 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G006800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 207 bp

ATGGCTATCTTCTCACCCATTCTCAATTGCTTCATGCCGTTGTCAAACTCACAGGTCTCAAATGATGCAGGAGGGCCTAAGGGTTGTGCAAAAGCTCCTTCTTCAAAGGAATCCAAGAAAAGCAAATCAAAATCATCGTCGTCTTCATCGAGAGCTCCCATTATAGTTTCTTACTTCCCCCATAATTCCTATTGCTCTCGCTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

69

Amino Acids

7.2

Weight (kDa)

9.79

Isoelectric Point (pI)

68.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002398)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g25611
malus_domestica	MD07G1004800.v1.1
prunus_persica	Prupe.2G006100_v2.0.a1 Prupe.2G006200_v2.0.a1 Prupe.2G006300_v2.0.a1 Prupe.2G006400_v2.0.a1 Prupe.2G006700_v2.0.a1 Prupe.2G006800_v2.0.a1 Prupe.2G006900_v2.0.a1
pyrus_communis	pycom02g26560 pycom07g00370
rosa_chinensis	RchiOBHm_Chr1g0314271 RchiOBHm_Chr1g0314291 RchiOBHm_Chr2g0123781 RchiOBHm_Chr2g0123791 RchiOBHm_Chr2g0123801 RchiOBHm_Chr2g0123821 RchiOBHm_Chr2g0123871 RchiOBHm_Chr2g0123881 RchiOBHm_Chr2g0123891
rosa_laevigata	RLG00000018776
rosa_multiflora	Rmu_sc0003270.1_g000037
rosa_roxburghii	Rroxscaffold_2G00120260 Rroxscaffold_2G00120270 Rroxscaffold_2G00120290 Rroxscaffold_2G00120310 Rroxscaffold_2G00120320 Rroxscaffold_2G00120330 Rroxscaffold_2G00120340 Rroxscaffold_4G00331990
rosa_rugosa	Rorug02G0248000 Rorug02G0248200
rosa_samantha	Rh2BG315500 Rh2CG293300 Rh2DG330700
rosa_wichuraiana	Rw1G000430 Rw2G024630 Rw2G024640 Rw2G024650 Rw2G024670 Rw2G024680 Rw2G024700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	1 cut(s)	105
AluBI	AGCT	2 cut(s)	95, 155
AluI	AGCT	2 cut(s)	95, 155
Alw21I	GWGCWC	1 cut(s)	157
Alw26I	GTCTC	1 cut(s)	61
AoxI	GGCC	1 cut(s)	74
ArsI	GACNNNNNNTTYG	2 cut(s)	122, 154
AspS9I	GGNCC	1 cut(s)	74
AsuHPI	GGTGA	1 cut(s)	6
AxyI	CCTNAGG	1 cut(s)	78
BanII	GRGCYC	1 cut(s)	157
BbsI	GAAGAC	1 cut(s)	135
Bbv12I	GWGCWC	1 cut(s)	157
BceAI	ACGGC	1 cut(s)	22
BcoDI	GTCTC	1 cut(s)	61
BmgT120I	GGNCC	1 cut(s)	74
BmsI	GCATC	1 cut(s)	55
BpiI	GAAGAC	1 cut(s)	135
BsaI	GGTCTC	1 cut(s)	61
Bse21I	CCTNAGG	1 cut(s)	78
BshFI	GGCC	1 cut(s)	76
BsiHKAI	GWGCWC	1 cut(s)	157
BsmAI	GTCTC	1 cut(s)	61
BsnI	GGCC	1 cut(s)	76
Bso31I	GGTCTC	1 cut(s)	61
Bsp1286I	GDGCHC	1 cut(s)	157
BspANI	GGCC	1 cut(s)	76
BspTNI	GGTCTC	1 cut(s)	61
BstDEI	CTNAG	1 cut(s)	78
BstMAI	GTCTC	1 cut(s)	61
BstV2I	GAAGAC	1 cut(s)	135
Bsu36I	CCTNAGG	1 cut(s)	78
BsuRI	GGCC	1 cut(s)	76
Cfr13I	GGNCC	1 cut(s)	74
CviAII	CATG	1 cut(s)	34
CviJI	RGCY	4 cut(s)	5, 76, 95, 155
CviKI_1	RGCY	4 cut(s)	5, 76, 95, 155
DdeI	CTNAG	1 cut(s)	78
Ecl136II	GAGCTC	1 cut(s)	155
Eco24I	GRGCYC	1 cut(s)	157
Eco31I	GGTCTC	1 cut(s)	61
Eco53kI	GAGCTC	1 cut(s)	155
Eco81I	CCTNAGG	1 cut(s)	78
EcoICRI	GAGCTC	1 cut(s)	155
EcoO109I	RGGNCCY	1 cut(s)	74
EcoT38I	GRGCYC	1 cut(s)	157
FaeI	CATG	1 cut(s)	37
FaiI	YATR	3 cut(s)	35, 164, 183
FatI	CATG	1 cut(s)	33
FriOI	GRGCYC	1 cut(s)	157
HaeIII	GGCC	1 cut(s)	76
Hin1II	CATG	1 cut(s)	37
HinfI	GANTC	1 cut(s)	110
HphI	GGTGA	1 cut(s)	6
Hpy188III	TCNNGA	1 cut(s)	150
Hpy99I	CGWCG	1 cut(s)	142
HpyAV	CCTTC	1 cut(s)	108
HpyCH4V	TGCA	2 cut(s)	68, 89
HpyF3I	CTNAG	1 cut(s)	78
Hsp92II	CATG	1 cut(s)	37
LmnI	GCTCC	2 cut(s)	100, 160
LpnPI	CCDG	2 cut(s)	38, 54
LweI	GCATC	1 cut(s)	55
MboII	GAAGA	2 cut(s)	93, 135
MfeI	CAATTG	1 cut(s)	25
MhlI	GDGCHC	1 cut(s)	157
MluCI	AATT	2 cut(s)	25, 184
MnlI	CCTC	1 cut(s)	65
MunI	CAATTG	1 cut(s)	25
NlaIII	CATG	1 cut(s)	37
PcsI	WCGNNNNNNNCGW	1 cut(s)	146
PfeI	GAWTC	1 cut(s)	110
Psp124BI	GAGCTC	1 cut(s)	157
PspPI	GGNCC	1 cut(s)	74
SacI	GAGCTC	1 cut(s)	157
Sau96I	GGNCC	1 cut(s)	74
SduI	GDGCHC	1 cut(s)	157
SetI	ASST	3 cut(s)	57, 97, 157
SfaNI	GCATC	1 cut(s)	55
SgeI	CNNG	5 cut(s)	46, 65, 81, 127, 162
Sse9I	AATT	2 cut(s)	25, 184
SstI	GAGCTC	1 cut(s)	157
TaqI	TCGA	1 cut(s)	149
TasI	AATT	2 cut(s)	25, 184
TfiI	GAWTC	1 cut(s)	110
TspDTI	ATGAA	2 cut(s)	22, 135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.