RLG00000018776

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0002398
Physical Location & Seq
Forward (+)
35796948 .. 35797839
892 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018776

Sequence Viewer

Length: 381 bp
ATGGCCATTTTCTCAGCTTTTCTCAACTGCTTCATGTGTGCTCCATCATCATCATCATCATCATCACAGGTATCCGATGATGCAAAAGCACCTCATTCATCAAAGGAATCAAATTTCAAAAGCAAATCTTCAAAGTCGTCGTTGTCAGGAGCTCCCATTGTAGTTTCTCACTTTCCCCATAATTCATATATTTCTCGCTTGTACAGTGGCCAAGCCTTCTTCTCATCCACTGTAGATATTACAGCCGCGGATGCTGCCACCTGCCAAAGTCTAATCAGCAAGTTTTTGAGAATATTAGTACTTAACTGCGTGCATAGAGTCCTAAGTTCTGCTGGCTTGGAAATGAAAAATGACCAATTTCACAAGAGTAATGTTTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

127

Amino Acids

13.53

Weight (kDa)

9.02

Isoelectric Point (pI)

40.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 269
Acc36I ACCTGC 1 cut(s) 269
AccII CGCG 1 cut(s) 248
AciI CCGC 2 cut(s) 246, 248
AcoI YGGCCR 2 cut(s) 3, 208
AcsI RAATTY 1 cut(s) 112
AfaI GTAC 2 cut(s) 203, 300
AgsI TTSAA 2 cut(s) 118, 132
AluBI AGCT 2 cut(s) 17, 152
AluI AGCT 2 cut(s) 17, 152
Alw21I GWGCWC 2 cut(s) 43, 154
AoxI GGCC 2 cut(s) 3, 208
ApeKI GCWGC 1 cut(s) 254
ApoI RAATTY 1 cut(s) 112
BalI TGGCCA 2 cut(s) 5, 210
BanII GRGCYC 1 cut(s) 154
Bbv12I GWGCWC 2 cut(s) 43, 154
BbvI GCAGC 1 cut(s) 241
BccI CCATC 1 cut(s) 52
BciVI GTATCC 1 cut(s) 82
BfmI CTRYAG 1 cut(s) 231
BfuAI ACCTGC 1 cut(s) 269
BfuI GTATCC 1 cut(s) 82
BisI GCNGC 2 cut(s) 246, 255
BlsI GCNGC 2 cut(s) 247, 256
BmcAI AGTACT 1 cut(s) 300
BmsI GCATC 2 cut(s) 70, 241
BsaJI CCNNGG 1 cut(s) 246
BseDI CCNNGG 1 cut(s) 246
BseGI GGATG 2 cut(s) 224, 256
BseMII CTCAG 1 cut(s) 27
BseXI GCAGC 1 cut(s) 241
Bsh1236I CGCG 1 cut(s) 248
BshFI GGCC 2 cut(s) 5, 210
BsiHKAI GWGCWC 2 cut(s) 43, 154
BsnI GGCC 2 cut(s) 5, 210
Bsp1286I GDGCHC 2 cut(s) 43, 154
Bsp1407I TGTACA 1 cut(s) 201
BspACI CCGC 2 cut(s) 246, 248
BspANI GGCC 2 cut(s) 5, 210
BspCNI CTCAG 1 cut(s) 26
BspFNI CGCG 1 cut(s) 248
BspMI ACCTGC 1 cut(s) 269
BsrGI TGTACA 1 cut(s) 201
BssECI CCNNGG 1 cut(s) 246
Bst4CI ACNGT 2 cut(s) 206, 232
BstAUI TGTACA 1 cut(s) 201
BstC8I GCNNGC 2 cut(s) 311, 334
BstDEI CTNAG 2 cut(s) 13, 323
BstDSI CCRYGG 1 cut(s) 246
BstF5I GGATG 2 cut(s) 224, 256
BstFNI CGCG 1 cut(s) 248
BstMWI GCNNNNNNNGC 2 cut(s) 251, 254
BstSFI CTRYAG 1 cut(s) 231
BstUI CGCG 1 cut(s) 248
BstV1I GCAGC 1 cut(s) 241
BsuI GTATCC 1 cut(s) 82
BsuRI GGCC 2 cut(s) 5, 210
BtgI CCRYGG 1 cut(s) 246
BtsCI GGATG 2 cut(s) 224, 256
BtsIMutI CAGTG 2 cut(s) 211, 228
BveI ACCTGC 1 cut(s) 269
Cac8I GCNNGC 2 cut(s) 311, 334
Cfr42I CCGCGG 1 cut(s) 249
Csp6I GTAC 2 cut(s) 202, 299
CviAII CATG 1 cut(s) 34
CviJI RGCY 7 cut(s) 5, 17, 152, 210, 215, 245, 336
CviKI_1 RGCY 7 cut(s) 5, 17, 152, 210, 215, 245, 336
CviQI GTAC 2 cut(s) 202, 299
DdeI CTNAG 2 cut(s) 13, 323
EaeI YGGCCR 2 cut(s) 3, 208
Ecl136II GAGCTC 1 cut(s) 152
Eco24I GRGCYC 1 cut(s) 154
Eco53kI GAGCTC 1 cut(s) 152
EcoICRI GAGCTC 1 cut(s) 152
EcoT38I GRGCYC 1 cut(s) 154
FaeI CATG 1 cut(s) 37
FaiI YATR 6 cut(s) 35, 180, 187, 189, 315, 379
FalI AAGNNNNNCTT 2 cut(s) 112, 144
FatI CATG 1 cut(s) 33
Fnu4HI GCNGC 2 cut(s) 246, 255
FokI GGATG 2 cut(s) 211, 263
FriOI GRGCYC 1 cut(s) 154
Fsp4HI GCNGC 2 cut(s) 246, 255
GluI GCNGC 2 cut(s) 246, 255
HaeIII GGCC 2 cut(s) 5, 210
Hin1II CATG 1 cut(s) 37
HinfI GANTC 2 cut(s) 107, 318
Hpy188I TCNGA 1 cut(s) 76
Hpy188III TCNNGA 1 cut(s) 147
Hpy99I CGWCG 1 cut(s) 142
HpyAV CCTTC 1 cut(s) 226
HpyCH4III ACNGT 2 cut(s) 206, 232
HpyCH4V TGCA 2 cut(s) 83, 313
HpyF10VI GCNNNNNNNGC 2 cut(s) 251, 254
HpyF3I CTNAG 2 cut(s) 13, 323
Hsp92II CATG 1 cut(s) 37
KspI CCGCGG 1 cut(s) 249
LmnI GCTCC 3 cut(s) 46, 149, 157
LpnPI CCDG 4 cut(s) 53, 132, 274, 318
Lsp1109I GCAGC 1 cut(s) 241
LweI GCATC 2 cut(s) 70, 241
MboII GAAGA 2 cut(s) 120, 211
MhlI GDGCHC 2 cut(s) 43, 154
MlsI TGGCCA 2 cut(s) 5, 210
MluCI AATT 3 cut(s) 112, 181, 356
MluNI TGGCCA 2 cut(s) 5, 210
MlyI GAGTC 1 cut(s) 327
MnlI CCTC 1 cut(s) 102
Mox20I TGGCCA 2 cut(s) 5, 210
MscI TGGCCA 2 cut(s) 5, 210
MseI TTAA 1 cut(s) 303
Msp20I TGGCCA 2 cut(s) 5, 210
MspA1I CMGCKG 1 cut(s) 248
MvnI CGCG 1 cut(s) 248
MwoI GCNNNNNNNGC 2 cut(s) 251, 254
NlaIII CATG 1 cut(s) 37
PaqCI CACCTGC 1 cut(s) 269
PfeI GAWTC 1 cut(s) 107
PkrI GCNGC 2 cut(s) 247, 256
PleI GAGTC 1 cut(s) 326
PpsI GAGTC 1 cut(s) 326
Psp124BI GAGCTC 1 cut(s) 154
RsaI GTAC 2 cut(s) 203, 300
RsaNI GTAC 2 cut(s) 202, 299
SacI GAGCTC 1 cut(s) 154
SacII CCGCGG 1 cut(s) 249
SaqAI TTAA 1 cut(s) 303
SatI GCNGC 2 cut(s) 246, 255
ScaI AGTACT 1 cut(s) 300
SchI GAGTC 1 cut(s) 327
SduI GDGCHC 2 cut(s) 43, 154
SetI ASST 5 cut(s) 19, 72, 94, 154, 263
SfaNI GCATC 2 cut(s) 70, 241
SfcI CTRYAG 1 cut(s) 231
Sfr303I CCGCGG 1 cut(s) 249
SgrBI CCGCGG 1 cut(s) 249
Sse9I AATT 3 cut(s) 112, 181, 356
SsiI CCGC 2 cut(s) 246, 248
SspI AATATT 1 cut(s) 294
SstI GAGCTC 1 cut(s) 154
TaaI ACNGT 2 cut(s) 206, 232
TasI AATT 3 cut(s) 112, 181, 356
TatI WGTACW 2 cut(s) 201, 298
TauI GCSGC 1 cut(s) 248
TfiI GAWTC 1 cut(s) 107
Tru1I TTAA 1 cut(s) 303
Tru9I TTAA 1 cut(s) 303
TscAI CASTG 2 cut(s) 211, 235
TseI GCWGC 1 cut(s) 254
TspDTI ATGAA 4 cut(s) 22, 87, 174, 359
TspRI CASTG 2 cut(s) 211, 235
XapI RAATTY 1 cut(s) 112
ZrmI AGTACT 1 cut(s) 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.