Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002398

Physical Location & Seq

Genomic Coordinates Reverse (-)

52535391 .. 52538911

Gene Structure 3521 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00120310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

ATGAAAACAGCCAGCGGTGAAGATCCACGGACCCTTCGAATGGTTTCTGGAGAATTTGCTCTTCTCAGTTGCTTCATCCCCTCATCATCGTCACAGGTTTCTGATGCTGCAGGAAATGCCAGTATTGCAAAAGCTCCTTCCTCAAAGGATTCCAGGAAAAGTAACTCTTTGAAATCATCTTCATCGGGAGCTCCCATAGTAGTTTCACACTTCCCCCATAACTCGTATATCTCTCGTCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

80

Amino Acids

8.33

Weight (kDa)

9.74

Isoelectric Point (pI)

50.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002398)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g25611
malus_domestica	MD07G1004800.v1.1
prunus_persica	Prupe.2G006100_v2.0.a1 Prupe.2G006200_v2.0.a1 Prupe.2G006300_v2.0.a1 Prupe.2G006400_v2.0.a1 Prupe.2G006700_v2.0.a1 Prupe.2G006800_v2.0.a1 Prupe.2G006900_v2.0.a1
pyrus_communis	pycom02g26560 pycom07g00370
rosa_chinensis	RchiOBHm_Chr1g0314271 RchiOBHm_Chr1g0314291 RchiOBHm_Chr2g0123781 RchiOBHm_Chr2g0123791 RchiOBHm_Chr2g0123801 RchiOBHm_Chr2g0123821 RchiOBHm_Chr2g0123871 RchiOBHm_Chr2g0123881 RchiOBHm_Chr2g0123891
rosa_laevigata	RLG00000018776
rosa_multiflora	Rmu_sc0003270.1_g000037
rosa_roxburghii	Rroxscaffold_2G00120260 Rroxscaffold_2G00120270 Rroxscaffold_2G00120290 Rroxscaffold_2G00120310 Rroxscaffold_2G00120320 Rroxscaffold_2G00120330 Rroxscaffold_2G00120340 Rroxscaffold_4G00331990
rosa_rugosa	Rorug02G0248000 Rorug02G0248200
rosa_samantha	Rh2BG315500 Rh2CG293300 Rh2DG330700
rosa_wichuraiana	Rw1G000430 Rw2G024630 Rw2G024640 Rw2G024650 Rw2G024670 Rw2G024680 Rw2G024700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	15
AclWI	GGATC	1 cut(s)	17
AcsI	RAATTY	1 cut(s)	53
AfiI	CCNNNNNNNGG	1 cut(s)	40
AgsI	TTSAA	1 cut(s)	172
AjnI	CCWGG	1 cut(s)	152
AluBI	AGCT	2 cut(s)	134, 191
AluI	AGCT	2 cut(s)	134, 191
Alw21I	GWGCWC	1 cut(s)	193
AlwI	GGATC	1 cut(s)	17
ApeKI	GCWGC	1 cut(s)	107
ApoI	RAATTY	1 cut(s)	53
Asp700I	GAANNNNTTC	1 cut(s)	43
AspS9I	GGNCC	1 cut(s)	30
AsuHPI	GGTGA	1 cut(s)	29
AsuII	TTCGAA	1 cut(s)	37
AvaII	GGWCC	1 cut(s)	30
BanII	GRGCYC	1 cut(s)	193
Bbv12I	GWGCWC	1 cut(s)	193
BbvI	GCAGC	1 cut(s)	94
BciT130I	CCWGG	1 cut(s)	154
BfmI	CTRYAG	1 cut(s)	108
BisI	GCNGC	1 cut(s)	108
BlsI	GCNGC	1 cut(s)	109
Bme1390I	CCNGG	1 cut(s)	154
Bme18I	GGWCC	1 cut(s)	30
BmgT120I	GGNCC	1 cut(s)	30
BmiI	GGNNCC	1 cut(s)	32
BmrFI	CCNGG	1 cut(s)	154
BmsI	GCATC	1 cut(s)	94
BpmI	CTGGAG	1 cut(s)	69
Bpu14I	TTCGAA	1 cut(s)	37
BsaJI	CCNNGG	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	1 cut(s)	40
Bse1I	ACTGG	1 cut(s)	120
BseBI	CCWGG	1 cut(s)	154
BseDI	CCNNGG	1 cut(s)	26
BseGI	GGATG	1 cut(s)	75
BseLI	CCNNNNNNNGG	1 cut(s)	40
BseMII	CTCAG	1 cut(s)	79
BseNI	ACTGG	1 cut(s)	120
BseXI	GCAGC	1 cut(s)	94
BsiHKAI	GWGCWC	1 cut(s)	193
BslI	CCNNNNNNNGG	1 cut(s)	40
Bsp119I	TTCGAA	1 cut(s)	37
Bsp1286I	GDGCHC	1 cut(s)	193
Bsp143I	GATC	1 cut(s)	22
BspACI	CCGC	1 cut(s)	15
BspCNI	CTCAG	1 cut(s)	78
BspLI	GGNNCC	1 cut(s)	32
BspMAI	CTGCAG	1 cut(s)	112
BspPI	GGATC	1 cut(s)	17
BspQI	GCTCTTC	1 cut(s)	66
BspT104I	TTCGAA	1 cut(s)	37
BsrI	ACTGG	1 cut(s)	120
BssECI	CCNNGG	1 cut(s)	26
BssMI	GATC	1 cut(s)	22
Bst2UI	CCWGG	1 cut(s)	154
Bst6I	CTCTTC	1 cut(s)	66
BstAPI	GCANNNNNTGC	1 cut(s)	116
BstBI	TTCGAA	1 cut(s)	37
BstC8I	GCNNGC	1 cut(s)	13
BstDEI	CTNAG	1 cut(s)	65
BstDSI	CCRYGG	1 cut(s)	26
BstF5I	GGATG	1 cut(s)	75
BstKTI	GATC	1 cut(s)	25
BstMBI	GATC	1 cut(s)	22
BstMWI	GCNNNNNNNGC	2 cut(s)	116, 125
BstNI	CCWGG	1 cut(s)	154
BstSCI	CCNGG	1 cut(s)	152
BstSFI	CTRYAG	1 cut(s)	108
BstV1I	GCAGC	1 cut(s)	94
BstX2I	RGATCY	1 cut(s)	22
BstYI	RGATCY	1 cut(s)	22
BtgI	CCRYGG	1 cut(s)	26
BtsCI	GGATG	1 cut(s)	75
Cac8I	GCNNGC	1 cut(s)	13
Cfr13I	GGNCC	1 cut(s)	30
CviJI	RGCY	3 cut(s)	11, 134, 191
CviKI_1	RGCY	3 cut(s)	11, 134, 191
DdeI	CTNAG	1 cut(s)	65
DpnI	GATC	1 cut(s)	24
DpnII	GATC	1 cut(s)	22
Eam1104I	CTCTTC	1 cut(s)	66
EarI	CTCTTC	1 cut(s)	66
Ecl136II	GAGCTC	1 cut(s)	191
Eco24I	GRGCYC	1 cut(s)	193
Eco47I	GGWCC	1 cut(s)	30
Eco53kI	GAGCTC	1 cut(s)	191
EcoICRI	GAGCTC	1 cut(s)	191
EcoRII	CCWGG	1 cut(s)	152
EcoT38I	GRGCYC	1 cut(s)	193
FaiI	YATR	3 cut(s)	197, 219, 228
FalI	AAGNNNNNCTT	2 cut(s)	151, 183
Fnu4HI	GCNGC	1 cut(s)	108
FokI	GGATG	1 cut(s)	62
FriOI	GRGCYC	1 cut(s)	193
Fsp4HI	GCNGC	1 cut(s)	108
GluI	GCNGC	1 cut(s)	108
GsuI	CTGGAG	1 cut(s)	69
HinfI	GANTC	1 cut(s)	149
HphI	GGTGA	1 cut(s)	29
Hpy188I	TCNGA	1 cut(s)	103
Hpy188III	TCNNGA	2 cut(s)	48, 186
HpyAV	CCTTC	2 cut(s)	44, 147
HpyCH4V	TGCA	2 cut(s)	110, 128
HpyF10VI	GCNNNNNNNGC	2 cut(s)	116, 125
HpyF3I	CTNAG	1 cut(s)	65
Kzo9I	GATC	1 cut(s)	22
LguI	GCTCTTC	1 cut(s)	66
LmnI	GCTCC	3 cut(s)	139, 188, 196
LpnPI	CCDG	7 cut(s)	25, 33, 80, 96, 133, 139, 166
Lsp1109I	GCAGC	1 cut(s)	94
LweI	GCATC	1 cut(s)	94
MaeIII	GTNAC	2 cut(s)	90, 161
MalI	GATC	1 cut(s)	24
MboI	GATC	1 cut(s)	22
MboII	GAAGA	3 cut(s)	32, 53, 171
MflI	RGATCY	1 cut(s)	22
MhlI	GDGCHC	1 cut(s)	193
MluCI	AATT	1 cut(s)	53
MnlI	CCTC	2 cut(s)	91, 151
MroXI	GAANNNNTTC	1 cut(s)	43
MspA1I	CMGCKG	1 cut(s)	15
MspR9I	CCNGG	1 cut(s)	154
MvaI	CCWGG	1 cut(s)	154
MwoI	GCNNNNNNNGC	2 cut(s)	116, 125
NdeII	GATC	1 cut(s)	22
NlaIV	GGNNCC	1 cut(s)	32
NmuCI	GTSAC	1 cut(s)	90
NspV	TTCGAA	1 cut(s)	37
PciSI	GCTCTTC	1 cut(s)	66
PcsI	WCGNNNNNNNCGW	1 cut(s)	34
PdmI	GAANNNNTTC	1 cut(s)	43
PfeI	GAWTC	1 cut(s)	149
PfoI	TCCNGGA	1 cut(s)	152
PkrI	GCNGC	1 cut(s)	109
Psp124BI	GAGCTC	1 cut(s)	193
Psp6I	CCWGG	1 cut(s)	152
PspGI	CCWGG	1 cut(s)	152
PspN4I	GGNNCC	1 cut(s)	32
PspPI	GGNCC	1 cut(s)	30
PstI	CTGCAG	1 cut(s)	112
PsuI	RGATCY	1 cut(s)	22
SacI	GAGCTC	1 cut(s)	193
SapI	GCTCTTC	1 cut(s)	66
SatI	GCNGC	1 cut(s)	108
Sau3AI	GATC	1 cut(s)	22
Sau96I	GGNCC	1 cut(s)	30
ScrFI	CCNGG	1 cut(s)	154
SduI	GDGCHC	1 cut(s)	193
SetI	ASST	3 cut(s)	99, 136, 193
SfaNI	GCATC	1 cut(s)	94
SfcI	CTRYAG	1 cut(s)	108
SfuI	TTCGAA	1 cut(s)	37
SinI	GGWCC	1 cut(s)	30
Sse9I	AATT	1 cut(s)	53
SsiI	CCGC	1 cut(s)	15
SstI	GAGCTC	1 cut(s)	193
StyD4I	CCNGG	1 cut(s)	152
TaqI	TCGA	1 cut(s)	37
TasI	AATT	1 cut(s)	53
TfiI	GAWTC	1 cut(s)	149
TseFI	GTSAC	1 cut(s)	90
TseI	GCWGC	1 cut(s)	107
Tsp45I	GTSAC	1 cut(s)	90
TspDTI	ATGAA	3 cut(s)	17, 64, 171
TspGWI	ACGGA	1 cut(s)	43
VpaK11BI	GGWCC	1 cut(s)	30
XapI	RAATTY	1 cut(s)	53
XmnI	GAANNNNTTC	1 cut(s)	43

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.