Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0002398

Physical Location & Seq

Genomic Coordinates Forward (+)

36401668 .. 36402225

Gene Structure 558 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G024640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 201 bp

ATGGCTATTTTTTCAGTTCTTCTCAGTTGCTTCATCCCCTCATCATCGTCACAGGTTTCTGATGCTGCAGGAAATGCCAGTATTGCCAAAGCTCCTTCCTCAAAGGATTCCAAGAAAAGTAACTCTTTGAAATCATCATCATCGGGAGCTCCCATAGTAGTTTCACACTTCCCCCATAACTCGTATATCTCTCGTCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

66

Amino Acids

6.79

Weight (kDa)

9.75

Isoelectric Point (pI)

55.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002398)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g25611
malus_domestica	MD07G1004800.v1.1
prunus_persica	Prupe.2G006100_v2.0.a1 Prupe.2G006200_v2.0.a1 Prupe.2G006300_v2.0.a1 Prupe.2G006400_v2.0.a1 Prupe.2G006700_v2.0.a1 Prupe.2G006800_v2.0.a1 Prupe.2G006900_v2.0.a1
pyrus_communis	pycom02g26560 pycom07g00370
rosa_chinensis	RchiOBHm_Chr1g0314271 RchiOBHm_Chr1g0314291 RchiOBHm_Chr2g0123781 RchiOBHm_Chr2g0123791 RchiOBHm_Chr2g0123801 RchiOBHm_Chr2g0123821 RchiOBHm_Chr2g0123871 RchiOBHm_Chr2g0123881 RchiOBHm_Chr2g0123891
rosa_laevigata	RLG00000018776
rosa_multiflora	Rmu_sc0003270.1_g000037
rosa_roxburghii	Rroxscaffold_2G00120260 Rroxscaffold_2G00120270 Rroxscaffold_2G00120290 Rroxscaffold_2G00120310 Rroxscaffold_2G00120320 Rroxscaffold_2G00120330 Rroxscaffold_2G00120340 Rroxscaffold_4G00331990
rosa_rugosa	Rorug02G0248000 Rorug02G0248200
rosa_samantha	Rh2BG315500 Rh2CG293300 Rh2DG330700
rosa_wichuraiana	Rw1G000430 Rw2G024630 Rw2G024640 Rw2G024650 Rw2G024670 Rw2G024680 Rw2G024700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	1 cut(s)	130
AluBI	AGCT	2 cut(s)	92, 149
AluI	AGCT	2 cut(s)	92, 149
Alw21I	GWGCWC	1 cut(s)	151
ApeKI	GCWGC	1 cut(s)	65
BanII	GRGCYC	1 cut(s)	151
Bbv12I	GWGCWC	1 cut(s)	151
BbvI	GCAGC	1 cut(s)	52
BfmI	CTRYAG	1 cut(s)	66
BisI	GCNGC	1 cut(s)	66
BlsI	GCNGC	1 cut(s)	67
BmsI	GCATC	1 cut(s)	52
Bse1I	ACTGG	1 cut(s)	78
BseGI	GGATG	1 cut(s)	33
BseMII	CTCAG	1 cut(s)	37
BseNI	ACTGG	1 cut(s)	78
BseXI	GCAGC	1 cut(s)	52
BsiHKAI	GWGCWC	1 cut(s)	151
Bsp1286I	GDGCHC	1 cut(s)	151
BspCNI	CTCAG	1 cut(s)	36
BspMAI	CTGCAG	1 cut(s)	70
BsrI	ACTGG	1 cut(s)	78
BstAPI	GCANNNNNTGC	1 cut(s)	74
BstDEI	CTNAG	1 cut(s)	23
BstF5I	GGATG	1 cut(s)	33
BstMWI	GCNNNNNNNGC	2 cut(s)	74, 83
BstSFI	CTRYAG	1 cut(s)	66
BstV1I	GCAGC	1 cut(s)	52
BtsCI	GGATG	1 cut(s)	33
CviJI	RGCY	3 cut(s)	5, 92, 149
CviKI_1	RGCY	3 cut(s)	5, 92, 149
DdeI	CTNAG	1 cut(s)	23
Ecl136II	GAGCTC	1 cut(s)	149
Eco24I	GRGCYC	1 cut(s)	151
Eco53kI	GAGCTC	1 cut(s)	149
EcoICRI	GAGCTC	1 cut(s)	149
EcoT38I	GRGCYC	1 cut(s)	151
FaiI	YATR	3 cut(s)	155, 177, 186
FalI	AAGNNNNNCTT	2 cut(s)	109, 141
Fnu4HI	GCNGC	1 cut(s)	66
FokI	GGATG	1 cut(s)	20
FriOI	GRGCYC	1 cut(s)	151
Fsp4HI	GCNGC	1 cut(s)	66
GluI	GCNGC	1 cut(s)	66
HinfI	GANTC	1 cut(s)	107
Hpy188I	TCNGA	1 cut(s)	61
Hpy188III	TCNNGA	1 cut(s)	144
HpyAV	CCTTC	1 cut(s)	105
HpyCH4V	TGCA	1 cut(s)	68
HpyF10VI	GCNNNNNNNGC	2 cut(s)	74, 83
HpyF3I	CTNAG	1 cut(s)	23
LmnI	GCTCC	3 cut(s)	97, 146, 154
LpnPI	CCDG	3 cut(s)	38, 54, 91
Lsp1109I	GCAGC	1 cut(s)	52
LweI	GCATC	1 cut(s)	52
MaeIII	GTNAC	2 cut(s)	48, 119
MboII	GAAGA	1 cut(s)	11
MhlI	GDGCHC	1 cut(s)	151
MnlI	CCTC	2 cut(s)	49, 109
MwoI	GCNNNNNNNGC	2 cut(s)	74, 83
NmuCI	GTSAC	1 cut(s)	48
PfeI	GAWTC	1 cut(s)	107
PkrI	GCNGC	1 cut(s)	67
Psp124BI	GAGCTC	1 cut(s)	151
PstI	CTGCAG	1 cut(s)	70
SacI	GAGCTC	1 cut(s)	151
SatI	GCNGC	1 cut(s)	66
SduI	GDGCHC	1 cut(s)	151
SetI	ASST	3 cut(s)	57, 94, 151
SfaNI	GCATC	1 cut(s)	52
SfcI	CTRYAG	1 cut(s)	66
SgeI	CNNG	6 cut(s)	65, 81, 90, 124, 156, 193
SstI	GAGCTC	1 cut(s)	151
TfiI	GAWTC	1 cut(s)	107
TseFI	GTSAC	1 cut(s)	48
TseI	GCWGC	1 cut(s)	65
Tsp45I	GTSAC	1 cut(s)	48
TspDTI	ATGAA	1 cut(s)	22

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.