Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0002398

Physical Location & Seq

Genomic Coordinates Forward (+)

37191774 .. 37198588

Gene Structure 6815 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG315500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGTCGTTGAAACCTCAGCTCCCTCTCAGTCCCCACCTTTCTCCGCCTCCGACTGAGATCAATCAGCTTCTCATCTCAGGTAGCAACAACGACACCGTCACCGTCACTGATAGCACCGCCGCCACCTTGACTACCAAAAACGTCACAGTTTGGAACCCTGGGGGATCCGCTCCTTCTACTCCTCTGGTTTCCTCCTTCGTTTCAGATTTTGGGATTAAGCTAGGGTTGAGGCATGATCAGGAGTGGACTGACATGGGGGATGCATCGGTGGAGGTCGACTGGAATTCGAAGGCCGGGGGAGGTTGCTCAAGCAATTTAGAAGTGATATATGCCGATATAGCTATGATAATTGGTCATGAGGTTGGGCATGCCCTTATTTCACCTGATTTTGTCAACCCATTATCCAATCTTTTCTTAAGGCTTCTTTTTTCCCGAAGTAAGGTTACTTTGATGATCAGTATACTAGGACTTAACCGGAGCATACGTGCAGTACTTATTGACTGGCTTGTGGAGATCAGGTTGCTGAAAGTGCTATTAACTTTGACTGGGGTTTCTGTTCCATTAGAAGCTCTTCAACCTCTTTGGACCTCCATGAACCGTAAATCTTGGGGTAGAAAGTTACATTCCTCGTCATCAGCTGAAGACCTTCTCCAGTTGCTCGATCAGCTAAAACCACGTACTACACAATACCAATTAATGGCCATTTTTTCAGCTCTTCTTAGTTGCTTCATCCCTTCATCATCGTCACAGGTTTCCGATGATGTAGGAAATGCTAGTATTGCAGCTGCTTCCTCAAAGGATTCCAGAAAAATTAAGTCTTCAAAATCATCATCATCAGGAGCTCCTATAGTAGTTTCTCACTTCCCCCATAACTCATATATCTCTCGCCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000976 GO:0000977 GO:0000978 GO:0000981 GO:0000982 GO:0000987 GO:0001012 GO:0001067 GO:0001077 GO:0001228 GO:0001525 GO:0001568 GO:0001944 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009791 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010228 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0035239 GO:0035295 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0046483 GO:0048514 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0072358 GO:0072359 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1990837 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DDT HARE-HTH Homeobox WHIM1 WSD

Protein Analysis

297

Amino Acids

32.04

Weight (kDa)

7.83

Isoelectric Point (pI)

40.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002398)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g25611
malus_domestica	MD07G1004800.v1.1
prunus_persica	Prupe.2G006100_v2.0.a1 Prupe.2G006200_v2.0.a1 Prupe.2G006300_v2.0.a1 Prupe.2G006400_v2.0.a1 Prupe.2G006700_v2.0.a1 Prupe.2G006800_v2.0.a1 Prupe.2G006900_v2.0.a1
pyrus_communis	pycom02g26560 pycom07g00370
rosa_chinensis	RchiOBHm_Chr1g0314271 RchiOBHm_Chr1g0314291 RchiOBHm_Chr2g0123781 RchiOBHm_Chr2g0123791 RchiOBHm_Chr2g0123801 RchiOBHm_Chr2g0123821 RchiOBHm_Chr2g0123871 RchiOBHm_Chr2g0123881 RchiOBHm_Chr2g0123891
rosa_laevigata	RLG00000018776
rosa_multiflora	Rmu_sc0003270.1_g000037
rosa_roxburghii	Rroxscaffold_2G00120260 Rroxscaffold_2G00120270 Rroxscaffold_2G00120290 Rroxscaffold_2G00120310 Rroxscaffold_2G00120320 Rroxscaffold_2G00120330 Rroxscaffold_2G00120340 Rroxscaffold_4G00331990
rosa_rugosa	Rorug02G0248000 Rorug02G0248200
rosa_samantha	Rh2BG315500 Rh2CG293300 Rh2DG330700
rosa_wichuraiana	Rw1G000430 Rw2G024630 Rw2G024640 Rw2G024650 Rw2G024670 Rw2G024680 Rw2G024700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	697
AccBSI	CCGCTC	1 cut(s)	170
AccI	GTMKAC	2 cut(s)	276, 460
AciI	CCGC	4 cut(s)	44, 117, 120, 168
AclWI	GGATC	2 cut(s)	159, 172
AcoI	YGGCCR	1 cut(s)	699
AcsI	RAATTY	1 cut(s)	283
AcuI	CTGAAG	1 cut(s)	660
AfaI	GTAC	2 cut(s)	492, 679
AfiI	CCNNNNNNNGG	2 cut(s)	439, 697
AflII	CTTAAG	1 cut(s)	415
AgsI	TTSAA	3 cut(s)	10, 575, 822
AjnI	CCWGG	1 cut(s)	157
Alw21I	GWGCWC	1 cut(s)	844
AlwI	GGATC	2 cut(s)	159, 172
AoxI	GGCC	2 cut(s)	291, 699
ApeKI	GCWGC	2 cut(s)	782, 785
ApoI	RAATTY	1 cut(s)	283
AseI	ATTAAT	1 cut(s)	695
Asp700I	GAANNNNTTC	2 cut(s)	570, 645
AspS9I	GGNCC	1 cut(s)	585
AsuC2I	CCSGG	1 cut(s)	295
AsuHPI	GGTGA	2 cut(s)	91, 372
AsuII	TTCGAA	1 cut(s)	287
AvaII	GGWCC	1 cut(s)	585
BalI	TGGCCA	1 cut(s)	701
BamHI	GGATCC	1 cut(s)	164
BanII	GRGCYC	1 cut(s)	844
BarI	GAAGNNNNNNTAC	2 cut(s)	427, 459
BbsI	GAAGAC	2 cut(s)	648, 810
Bbv12I	GWGCWC	1 cut(s)	844
BbvCI	CCTCAGC	1 cut(s)	15
BbvI	GCAGC	2 cut(s)	772, 794
BciT130I	CCWGG	1 cut(s)	159
BclI	TGATCA	2 cut(s)	235, 453
BcnI	CCSGG	1 cut(s)	295
BfaI	CTAG	3 cut(s)	221, 464, 774
BfmI	CTRYAG	1 cut(s)	846
BfrI	CTTAAG	1 cut(s)	415
BisI	GCNGC	3 cut(s)	120, 783, 786
BlsI	GCNGC	3 cut(s)	121, 784, 787
BmcAI	AGTACT	1 cut(s)	492
Bme1390I	CCNGG	2 cut(s)	159, 295
Bme18I	GGWCC	1 cut(s)	585
BmgT120I	GGNCC	1 cut(s)	585
BmiI	GGNNCC	2 cut(s)	155, 166
BmrFI	CCNGG	2 cut(s)	159, 295
BmrI	ACTGGG	1 cut(s)	555
BmsI	GCATC	2 cut(s)	250, 272
BmuI	ACTGGG	1 cut(s)	555
BpiI	GAAGAC	2 cut(s)	648, 810
BpmI	CTGGAG	1 cut(s)	635
Bpu10I	CCTNAGC	1 cut(s)	15
Bpu14I	TTCGAA	1 cut(s)	287
BpuEI	CTTGAG	1 cut(s)	292
BpuMI	CCSGG	1 cut(s)	295
BsaAI	YACGTR	2 cut(s)	485, 677
BsaJI	CCNNGG	3 cut(s)	157, 158, 294
BsaWI	WCCGGW	1 cut(s)	474
BsaXI	ACNNNNNCTCC	5 cut(s)	33, 469, 499, 503, 533
Bsc4I	CCNNNNNNNGG	2 cut(s)	439, 697
Bse1I	ACTGG	4 cut(s)	284, 506, 550, 652
BseBI	CCWGG	1 cut(s)	159
BseDI	CCNNGG	3 cut(s)	157, 158, 294
BseGI	GGATG	2 cut(s)	265, 729
BseLI	CCNNNNNNNGG	2 cut(s)	439, 697
BseMII	CTCAG	4 cut(s)	29, 40, 45, 90
BseNI	ACTGG	4 cut(s)	284, 506, 550, 652
BseRI	GAGGAG	1 cut(s)	171
BseXI	GCAGC	2 cut(s)	772, 794
BsgI	GTGCAG	1 cut(s)	507
BshFI	GGCC	2 cut(s)	293, 701
BsiHKAI	GWGCWC	1 cut(s)	844
BsiSI	CCGG	2 cut(s)	294, 475
BslFI	GGGAC	1 cut(s)	15
BslI	CCNNNNNNNGG	2 cut(s)	439, 697
BsmFI	GGGAC	1 cut(s)	15
BsnI	GGCC	2 cut(s)	293, 701
Bsp119I	TTCGAA	1 cut(s)	287
Bsp1286I	GDGCHC	1 cut(s)	844
Bsp143I	GATC	6 cut(s)	57, 164, 235, 453, 513, 661
BspACI	CCGC	4 cut(s)	44, 117, 120, 168
BspANI	GGCC	2 cut(s)	293, 701
BspCNI	CTCAG	4 cut(s)	28, 39, 46, 89
BspHI	TCATGA	1 cut(s)	355
BspLI	GGNNCC	2 cut(s)	155, 166
BspPI	GGATC	2 cut(s)	159, 172
BspQI	GCTCTTC	2 cut(s)	576, 720
BspT104I	TTCGAA	1 cut(s)	287
BspTI	CTTAAG	1 cut(s)	415
BsrBI	CCGCTC	1 cut(s)	170
BsrI	ACTGG	4 cut(s)	284, 506, 550, 652
BssECI	CCNNGG	3 cut(s)	157, 158, 294
BssMI	GATC	6 cut(s)	57, 164, 235, 453, 513, 661
BssNAI	GTATAC	1 cut(s)	461
Bst1107I	GTATAC	1 cut(s)	461
Bst2UI	CCWGG	1 cut(s)	159
Bst4CI	ACNGT	4 cut(s)	97, 103, 148, 599
Bst6I	CTCTTC	2 cut(s)	576, 720
BstAFI	CTTAAG	1 cut(s)	415
BstBAI	YACGTR	2 cut(s)	485, 677
BstBI	TTCGAA	1 cut(s)	287
BstC8I	GCNNGC	1 cut(s)	369
BstDEI	CTNAG	5 cut(s)	15, 26, 54, 76, 719
BstF5I	GGATG	2 cut(s)	265, 729
BstKTI	GATC	6 cut(s)	60, 167, 238, 456, 516, 664
BstMBI	GATC	6 cut(s)	57, 164, 235, 453, 513, 661
BstMWI	GCNNNNNNNGC	4 cut(s)	338, 529, 664, 779
BstNI	CCWGG	1 cut(s)	159
BstNSI	RCATGY	1 cut(s)	371
BstSCI	CCNGG	2 cut(s)	157, 293
BstSFI	CTRYAG	1 cut(s)	846
BstV1I	GCAGC	2 cut(s)	772, 794
BstV2I	GAAGAC	2 cut(s)	648, 810
BstX2I	RGATCY	1 cut(s)	164
BstYI	RGATCY	1 cut(s)	164
BstZ17I	GTATAC	1 cut(s)	461
BsuRI	GGCC	2 cut(s)	293, 701
BtsCI	GGATG	2 cut(s)	265, 729
BtsIMutI	CAGTG	1 cut(s)	105
Cac8I	GCNNGC	1 cut(s)	369
CciI	TCATGA	1 cut(s)	355
Cfr13I	GGNCC	1 cut(s)	585
Csp6I	GTAC	2 cut(s)	491, 678
CviAII	CATG	5 cut(s)	233, 253, 356, 368, 592
CviQI	GTAC	2 cut(s)	491, 678
DdeI	CTNAG	5 cut(s)	15, 26, 54, 76, 719
DpnI	GATC	6 cut(s)	59, 166, 237, 455, 515, 663
DpnII	GATC	6 cut(s)	57, 164, 235, 453, 513, 661
EaeI	YGGCCR	1 cut(s)	699
Eam1104I	CTCTTC	2 cut(s)	576, 720
EarI	CTCTTC	2 cut(s)	576, 720
EciI	GGCGGA	1 cut(s)	33
Ecl136II	GAGCTC	1 cut(s)	842
Eco24I	GRGCYC	1 cut(s)	844
Eco47I	GGWCC	1 cut(s)	585
Eco53kI	GAGCTC	1 cut(s)	842
Eco57I	CTGAAG	1 cut(s)	660
EcoICRI	GAGCTC	1 cut(s)	842
EcoRI	GAATTC	1 cut(s)	283
EcoRII	CCWGG	1 cut(s)	157
EcoT22I	ATGCAT	1 cut(s)	265
EcoT38I	GRGCYC	1 cut(s)	844
FaeI	CATG	5 cut(s)	236, 256, 359, 371, 595
FaqI	GGGAC	1 cut(s)	15
FatI	CATG	5 cut(s)	232, 252, 355, 367, 591
FbaI	TGATCA	2 cut(s)	235, 453
FblI	GTMKAC	2 cut(s)	276, 460
Fnu4HI	GCNGC	3 cut(s)	120, 783, 786
FokI	GGATG	2 cut(s)	272, 716
FriOI	GRGCYC	1 cut(s)	844
Fsp4HI	GCNGC	3 cut(s)	120, 783, 786
FspBI	CTAG	3 cut(s)	221, 464, 774
GluI	GCNGC	3 cut(s)	120, 783, 786
GsuI	CTGGAG	1 cut(s)	635
HaeIII	GGCC	2 cut(s)	293, 701
HapII	CCGG	2 cut(s)	294, 475
Hin1II	CATG	5 cut(s)	236, 256, 359, 371, 595
HincII	GTYRAC	2 cut(s)	277, 394
HindII	GTYRAC	2 cut(s)	277, 394
HinfI	GANTC	1 cut(s)	800
HpaII	CCGG	2 cut(s)	294, 475
HphI	GGTGA	2 cut(s)	91, 372
Hpy166II	GTNNAC	4 cut(s)	246, 277, 394, 461
Hpy188I	TCNGA	3 cut(s)	51, 205, 757
Hpy188III	TCNNGA	5 cut(s)	239, 356, 432, 804, 837
Hpy8I	GTNNAC	4 cut(s)	246, 277, 394, 461
HpyAV	CCTTC	5 cut(s)	183, 205, 283, 656, 744
HpyCH4III	ACNGT	4 cut(s)	97, 103, 148, 599
HpyCH4IV	ACGT	3 cut(s)	141, 484, 676
HpyCH4V	TGCA	3 cut(s)	263, 488, 782
HpyF10VI	GCNNNNNNNGC	4 cut(s)	338, 529, 664, 779
HpyF3I	CTNAG	5 cut(s)	15, 26, 54, 76, 719
HpySE526I	ACGT	3 cut(s)	141, 484, 676
Hsp92II	CATG	5 cut(s)	236, 256, 359, 371, 595
Ksp22I	TGATCA	2 cut(s)	235, 453
Kzo9I	GATC	6 cut(s)	57, 164, 235, 453, 513, 661
LguI	GCTCTTC	2 cut(s)	576, 720
LmnI	GCTCC	5 cut(s)	24, 175, 477, 839, 847
Lsp1109I	GCAGC	2 cut(s)	772, 794
LweI	GCATC	2 cut(s)	250, 272
MaeI	CTAG	3 cut(s)	221, 464, 774
MaeII	ACGT	3 cut(s)	141, 484, 676
MaeIII	GTNAC	6 cut(s)	97, 103, 142, 442, 618, 744
MalI	GATC	6 cut(s)	59, 166, 237, 455, 515, 663
MbiI	CCGCTC	1 cut(s)	170
MboI	GATC	6 cut(s)	57, 164, 235, 453, 513, 661
MboII	GAAGA	4 cut(s)	563, 653, 707, 810
MflI	RGATCY	1 cut(s)	164
MhlI	GDGCHC	1 cut(s)	844
MlsI	TGGCCA	1 cut(s)	701
MluCI	AATT	5 cut(s)	283, 313, 348, 692, 810
MluNI	TGGCCA	1 cut(s)	701
MmeI	TCCRAC	1 cut(s)	74
Mox20I	TGGCCA	1 cut(s)	701
Mph1103I	ATGCAT	1 cut(s)	265
MroXI	GAANNNNTTC	2 cut(s)	570, 645
MscI	TGGCCA	1 cut(s)	701
MseI	TTAA	6 cut(s)	216, 416, 471, 536, 695, 813
Msp20I	TGGCCA	1 cut(s)	701
MspA1I	CMGCKG	2 cut(s)	638, 785
MspCI	CTTAAG	1 cut(s)	415
MspI	CCGG	2 cut(s)	294, 475
MspR9I	CCNGG	2 cut(s)	159, 295
MvaI	CCWGG	1 cut(s)	159
MwoI	GCNNNNNNNGC	4 cut(s)	338, 529, 664, 779
NciI	CCSGG	1 cut(s)	295
NdeII	GATC	6 cut(s)	57, 164, 235, 453, 513, 661
NlaIII	CATG	5 cut(s)	236, 256, 359, 371, 595
NlaIV	GGNNCC	2 cut(s)	155, 166
NmuCI	GTSAC	4 cut(s)	97, 103, 142, 744
NsiI	ATGCAT	1 cut(s)	265
NspI	RCATGY	1 cut(s)	371
NspV	TTCGAA	1 cut(s)	287
PaeI	GCATGC	1 cut(s)	371
PagI	TCATGA	1 cut(s)	355
PasI	CCCWGGG	1 cut(s)	158
PciSI	GCTCTTC	2 cut(s)	576, 720
PdmI	GAANNNNTTC	2 cut(s)	570, 645
PfeI	GAWTC	1 cut(s)	800
PflFI	GACNNNGTC	1 cut(s)	95
PflMI	CCANNNNNTGG	1 cut(s)	697
PkrI	GCNGC	3 cut(s)	121, 784, 787
Ppu21I	YACGTR	2 cut(s)	485, 677
PshBI	ATTAAT	1 cut(s)	695
Psp124BI	GAGCTC	1 cut(s)	844
Psp6I	CCWGG	1 cut(s)	157
PspGI	CCWGG	1 cut(s)	157
PspN4I	GGNNCC	2 cut(s)	155, 166
PspPI	GGNCC	1 cut(s)	585
PsuI	RGATCY	1 cut(s)	164
PsyI	GACNNNGTC	1 cut(s)	95
PvuII	CAGCTG	2 cut(s)	638, 785
RsaI	GTAC	2 cut(s)	492, 679
RsaNI	GTAC	2 cut(s)	491, 678
SacI	GAGCTC	1 cut(s)	844
SalI	GTCGAC	1 cut(s)	275
SapI	GCTCTTC	2 cut(s)	576, 720
SaqAI	TTAA	6 cut(s)	216, 416, 471, 536, 695, 813
SatI	GCNGC	3 cut(s)	120, 783, 786
Sau3AI	GATC	6 cut(s)	57, 164, 235, 453, 513, 661
Sau96I	GGNCC	1 cut(s)	585
ScaI	AGTACT	1 cut(s)	492
ScrFI	CCNGG	2 cut(s)	159, 295
SduI	GDGCHC	1 cut(s)	844
SfaNI	GCATC	2 cut(s)	250, 272
SfcI	CTRYAG	1 cut(s)	846
SfuI	TTCGAA	1 cut(s)	287
SinI	GGWCC	1 cut(s)	585
SmlI	CTYRAG	2 cut(s)	307, 415
SmoI	CTYRAG	2 cut(s)	307, 415
SphI	GCATGC	1 cut(s)	371
Sse9I	AATT	5 cut(s)	283, 313, 348, 692, 810
SsiI	CCGC	4 cut(s)	44, 117, 120, 168
SspMI	CTAG	3 cut(s)	221, 464, 774
SstI	GAGCTC	1 cut(s)	844
StyD4I	CCNGG	2 cut(s)	157, 293
TaaI	ACNGT	4 cut(s)	97, 103, 148, 599
TaiI	ACGT	3 cut(s)	144, 487, 679
TaqI	TCGA	3 cut(s)	276, 287, 660
TasI	AATT	5 cut(s)	283, 313, 348, 692, 810
TatI	WGTACW	1 cut(s)	490
TauI	GCSGC	1 cut(s)	122
TfiI	GAWTC	1 cut(s)	800
Tru1I	TTAA	6 cut(s)	216, 416, 471, 536, 695, 813
Tru9I	TTAA	6 cut(s)	216, 416, 471, 536, 695, 813
TscAI	CASTG	1 cut(s)	112
TseFI	GTSAC	4 cut(s)	97, 103, 142, 744
TseI	GCWGC	2 cut(s)	782, 785
Tsp45I	GTSAC	4 cut(s)	97, 103, 142, 744
TspDTI	ATGAA	3 cut(s)	608, 718, 726
TspRI	CASTG	1 cut(s)	112
Tth111I	GACNNNGTC	1 cut(s)	95
Van91I	CCANNNNNTGG	1 cut(s)	697
Vha464I	CTTAAG	1 cut(s)	415
VpaK11BI	GGWCC	1 cut(s)	585
VspI	ATTAAT	1 cut(s)	695
XapI	RAATTY	1 cut(s)	283
XceI	RCATGY	1 cut(s)	371
XmiI	GTMKAC	2 cut(s)	276, 460
XmnI	GAANNNNTTC	2 cut(s)	570, 645
XspI	CTAG	3 cut(s)	221, 464, 774
ZrmI	AGTACT	1 cut(s)	492
Zsp2I	ATGCAT	1 cut(s)	265

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.