pycom02g26560

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0002398
Physical Location & Seq
Forward (+)
24325153 .. 24325680
528 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g26560.1

Sequence Viewer

Length: 291 bp
ATGCTCGGTCTATATGGAGTATTTGTCTGGTCAGATCATTTCCCATCCATTTCTACTTTGCTAAGCCAAGTCCAAACCGACCAAATGGCCATGTTCTCAGCTTTTCTCAGTTGCTTCTTACCGTCTGCATCGTCGCAGGTCTCTGATGATGTAAGAGGGTCTAATAGCAGCGTAAAGGAGCCTTCTTCAAAAGACTCCAACAAAAGAAAGTCACAATCATCGTTATCGTCATCCGGAGCTCCCATACTCGTCTCTTACTTCCCCCAAAATTCGTATCTCTCTCGCTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

97

Amino Acids

10.44

Weight (kDa)

7.89

Isoelectric Point (pI)

61.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 127
AccIII TCCGGA 1 cut(s) 233
AcoI YGGCCR 1 cut(s) 87
AcsI RAATTY 1 cut(s) 268
AgsI TTSAA 1 cut(s) 189
AluBI AGCT 2 cut(s) 101, 239
AluI AGCT 2 cut(s) 101, 239
Alw21I GWGCWC 1 cut(s) 241
Alw26I GTCTC 2 cut(s) 145, 256
Aor13HI TCCGGA 1 cut(s) 233
AoxI GGCC 1 cut(s) 87
ApeKI GCWGC 1 cut(s) 168
ApoI RAATTY 1 cut(s) 268
BalI TGGCCA 1 cut(s) 89
BanII GRGCYC 1 cut(s) 241
Bbv12I GWGCWC 1 cut(s) 241
BbvI GCAGC 1 cut(s) 180
BccI CCATC 1 cut(s) 52
BcoDI GTCTC 2 cut(s) 145, 256
BfuAI ACCTGC 1 cut(s) 127
BisI GCNGC 1 cut(s) 169
BlpI GCTNAGC 1 cut(s) 62
BlsI GCNGC 1 cut(s) 170
BmiI GGNNCC 1 cut(s) 180
BmsI GCATC 1 cut(s) 137
Bpu1102I GCTNAGC 1 cut(s) 62
BsaI GGTCTC 1 cut(s) 145
BsaWI WCCGGW 1 cut(s) 233
BsaXI ACNNNNNCTCC 2 cut(s) 9, 39
BseAI TCCGGA 1 cut(s) 233
BseGI GGATG 2 cut(s) 44, 230
BseMII CTCAG 2 cut(s) 111, 121
BseXI GCAGC 1 cut(s) 180
BshFI GGCC 1 cut(s) 89
BsiHKAI GWGCWC 1 cut(s) 241
BsiSI CCGG 1 cut(s) 234
BsmAI GTCTC 2 cut(s) 145, 256
BsmBI CGTCTC 1 cut(s) 256
BsnI GGCC 1 cut(s) 89
Bso31I GGTCTC 1 cut(s) 145
Bsp1286I GDGCHC 1 cut(s) 241
Bsp13I TCCGGA 1 cut(s) 233
Bsp143I GATC 1 cut(s) 34
Bsp1720I GCTNAGC 1 cut(s) 62
BspANI GGCC 1 cut(s) 89
BspCNI CTCAG 2 cut(s) 110, 120
BspEI TCCGGA 1 cut(s) 233
BspLI GGNNCC 1 cut(s) 180
BspMI ACCTGC 1 cut(s) 127
BspTNI GGTCTC 1 cut(s) 145
BssMI GATC 1 cut(s) 34
Bst4CI ACNGT 1 cut(s) 123
BstDEI CTNAG 3 cut(s) 62, 97, 107
BstF5I GGATG 2 cut(s) 44, 230
BstKTI GATC 1 cut(s) 37
BstMAI GTCTC 2 cut(s) 145, 256
BstMBI GATC 1 cut(s) 34
BstV1I GCAGC 1 cut(s) 180
BsuRI GGCC 1 cut(s) 89
BtsCI GGATG 2 cut(s) 44, 230
BveI ACCTGC 1 cut(s) 127
CviAII CATG 1 cut(s) 91
CviJI RGCY 5 cut(s) 66, 89, 101, 181, 239
CviKI_1 RGCY 5 cut(s) 66, 89, 101, 181, 239
DdeI CTNAG 3 cut(s) 62, 97, 107
DpnI GATC 1 cut(s) 36
DpnII GATC 1 cut(s) 34
EaeI YGGCCR 1 cut(s) 87
Ecl136II GAGCTC 1 cut(s) 239
Eco24I GRGCYC 1 cut(s) 241
Eco31I GGTCTC 1 cut(s) 145
Eco53kI GAGCTC 1 cut(s) 239
EcoICRI GAGCTC 1 cut(s) 239
EcoT38I GRGCYC 1 cut(s) 241
Esp3I CGTCTC 1 cut(s) 256
FaeI CATG 1 cut(s) 94
FaiI YATR 4 cut(s) 13, 15, 92, 245
FatI CATG 1 cut(s) 90
Fnu4HI GCNGC 1 cut(s) 169
FokI GGATG 2 cut(s) 31, 217
FriOI GRGCYC 1 cut(s) 241
Fsp4HI GCNGC 1 cut(s) 169
GluI GCNGC 1 cut(s) 169
HaeIII GGCC 1 cut(s) 89
HapII CCGG 1 cut(s) 234
Hin1II CATG 1 cut(s) 94
HinfI GANTC 1 cut(s) 194
HpaII CCGG 1 cut(s) 234
Hpy188I TCNGA 2 cut(s) 34, 145
Hpy188III TCNNGA 1 cut(s) 234
Hpy99I CGWCG 1 cut(s) 136
HpyAV CCTTC 1 cut(s) 192
HpyCH4III ACNGT 1 cut(s) 123
HpyCH4V TGCA 1 cut(s) 128
HpyF3I CTNAG 3 cut(s) 62, 97, 107
Hsp92II CATG 1 cut(s) 94
Kpn2I TCCGGA 1 cut(s) 233
Kzo9I GATC 1 cut(s) 34
LmnI GCTCC 3 cut(s) 178, 236, 244
LpnPI CCDG 3 cut(s) 13, 122, 247
Lsp1109I GCAGC 1 cut(s) 180
LweI GCATC 1 cut(s) 137
MaeIII GTNAC 1 cut(s) 210
MalI GATC 1 cut(s) 36
MboI GATC 1 cut(s) 34
MboII GAAGA 1 cut(s) 177
MhlI GDGCHC 1 cut(s) 241
MlsI TGGCCA 1 cut(s) 89
MluCI AATT 1 cut(s) 268
MluNI TGGCCA 1 cut(s) 89
MlyI GAGTC 1 cut(s) 188
MmeI TCCRAC 1 cut(s) 222
MnlI CCTC 1 cut(s) 149
Mox20I TGGCCA 1 cut(s) 89
MroI TCCGGA 1 cut(s) 233
MscI TGGCCA 1 cut(s) 89
Msp20I TGGCCA 1 cut(s) 89
MspI CCGG 1 cut(s) 234
NdeII GATC 1 cut(s) 34
NlaIII CATG 1 cut(s) 94
NlaIV GGNNCC 1 cut(s) 180
NmuCI GTSAC 1 cut(s) 210
PkrI GCNGC 1 cut(s) 170
PleI GAGTC 1 cut(s) 188
PpsI GAGTC 1 cut(s) 188
Psp124BI GAGCTC 1 cut(s) 241
PspN4I GGNNCC 1 cut(s) 180
SacI GAGCTC 1 cut(s) 241
SatI GCNGC 1 cut(s) 169
Sau3AI GATC 1 cut(s) 34
SchI GAGTC 1 cut(s) 188
SduI GDGCHC 1 cut(s) 241
SetI ASST 3 cut(s) 103, 141, 241
SfaNI GCATC 1 cut(s) 137
SgeI CNNG 7 cut(s) 17, 40, 80, 103, 149, 246, 260
Sse9I AATT 1 cut(s) 268
SstI GAGCTC 1 cut(s) 241
TaaI ACNGT 1 cut(s) 123
TasI AATT 1 cut(s) 268
TseFI GTSAC 1 cut(s) 210
TseI GCWGC 1 cut(s) 168
Tsp45I GTSAC 1 cut(s) 210
XapI RAATTY 1 cut(s) 268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.