Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0008833

Physical Location & Seq

Genomic Coordinates Reverse (-)

19299773 .. 19300866

Gene Structure 1094 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g27651.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGCTTCCATTGCCTTACAACTCTGATAGGAGTCATAGGACACTGACTTTTCTATGTCTTAAAAACAGAAACCCTACAGAAAAAATCCTCCCTACAGTTGACGTTCACAGGTACAGACCTCCACCAACAGTTGCGTATCTTTCACCGAGAGGTCCTGCACAGCTTACAGAAAATATTCTCAAGCCTGATGTAATGGGTCTAGGAGTGGCCATTTTAGCTGCCATCTGTCCCAAGAATGAATCAGGGAGTGTCCCAAATGGAGAAGAAACCAGTAATCTGAGAGAGACATGCATGAAATCTCAATTCAAAATACTGGTGCTCCCTCTTTTCTTGAGGTTGAGGAACCATTTTTTACTGGATTTCATGTTGTCCTTTCCTGAATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9 PA Peptidase_S8

Protein Analysis

129

Amino Acids

14.52

Weight (kDa)

9.18

Isoelectric Point (pI)

50.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008833)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g27651
rosa_chinensis	RchiOBHm_Chr1g0330501 RchiOBHm_Chr1g0341541 RchiOBHm_Chr3g0493181 RchiOBHm_Chr5g0068631 RchiOBHm_Chr7g0200611 RchiOBHm_Chr7g0235681 RchiOBHm_Chr7g0242661
rosa_multiflora	Rmu_sc0002539.1_g000024
rosa_roxburghii	Rroxscaffold_1G00071600 Rroxscaffold_3G00223660 Rroxscaffold_5G00346520 Rroxscaffold_5G00366050
rosa_rugosa	Rorug05G0582300
rosa_samantha	Rh3AG308700 Rh4BG032100 Rh5AG071000 Rh5AG405200 Rh5CG079900 Rh7AG127500 Rh7CG198000
rosa_wichuraiana	Rw1G003250 Rw5G028180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	207
AcsI	RAATTY	1 cut(s)	380
AfaI	GTAC	1 cut(s)	113
AgsI	TTSAA	1 cut(s)	307
AluBI	AGCT	2 cut(s)	163, 218
AluI	AGCT	2 cut(s)	163, 218
Alw21I	GWGCWC	1 cut(s)	321
Alw26I	GTCTC	1 cut(s)	278
AoxI	GGCC	1 cut(s)	207
ApeKI	GCWGC	1 cut(s)	218
ApoI	RAATTY	1 cut(s)	380
Asp700I	GAANNNNTTC	1 cut(s)	174
AspS9I	GGNCC	1 cut(s)	152
AsuHPI	GGTGA	1 cut(s)	135
AvaII	GGWCC	1 cut(s)	152
BalI	TGGCCA	1 cut(s)	209
Bbv12I	GWGCWC	1 cut(s)	321
BbvI	GCAGC	1 cut(s)	205
BccI	CCATC	1 cut(s)	230
BcoDI	GTCTC	1 cut(s)	278
BfaI	CTAG	1 cut(s)	200
BfmI	CTRYAG	2 cut(s)	75, 93
BisI	GCNGC	1 cut(s)	219
BlsI	GCNGC	1 cut(s)	220
Bme18I	GGWCC	1 cut(s)	152
BmgT120I	GGNCC	1 cut(s)	152
BmiI	GGNNCC	1 cut(s)	344
BpuEI	CTTGAG	2 cut(s)	164, 352
BsaXI	ACNNNNNCTCC	2 cut(s)	303, 333
Bse1I	ACTGG	3 cut(s)	270, 318, 360
Bse3DI	GCAATG	1 cut(s)	8
BseMI	GCAATG	1 cut(s)	8
BseMII	CTCAG	1 cut(s)	269
BseNI	ACTGG	3 cut(s)	270, 318, 360
BseXI	GCAGC	1 cut(s)	205
BsgI	GTGCAG	1 cut(s)	141
BshFI	GGCC	1 cut(s)	209
BsiHKAI	GWGCWC	1 cut(s)	321
BslFI	GGGAC	2 cut(s)	213, 236
BsmAI	GTCTC	1 cut(s)	278
BsmFI	GGGAC	2 cut(s)	213, 236
BsnI	GGCC	1 cut(s)	209
Bsp1286I	GDGCHC	1 cut(s)	321
BspANI	GGCC	1 cut(s)	209
BspCNI	CTCAG	1 cut(s)	270
BspLI	GGNNCC	1 cut(s)	344
BsrDI	GCAATG	1 cut(s)	8
BsrI	ACTGG	3 cut(s)	270, 318, 360
Bst4CI	ACNGT	2 cut(s)	97, 130
BstDEI	CTNAG	1 cut(s)	278
BstMAI	GTCTC	1 cut(s)	278
BstMWI	GCNNNNNNNGC	2 cut(s)	10, 215
BstNSI	RCATGY	1 cut(s)	291
BstSFI	CTRYAG	2 cut(s)	75, 93
BstV1I	GCAGC	1 cut(s)	205
BsuRI	GGCC	1 cut(s)	209
BtsIMutI	CAGTG	1 cut(s)	41
Cfr13I	GGNCC	1 cut(s)	152
Csp6I	GTAC	1 cut(s)	112
CviAII	CATG	3 cut(s)	288, 292, 364
CviJI	RGCY	4 cut(s)	163, 184, 209, 218
CviKI_1	RGCY	4 cut(s)	163, 184, 209, 218
CviQI	GTAC	1 cut(s)	112
DdeI	CTNAG	1 cut(s)	278
EaeI	YGGCCR	1 cut(s)	207
Eco47I	GGWCC	1 cut(s)	152
EcoO109I	RGGNCCY	1 cut(s)	152
EcoRI	GAATTC	1 cut(s)	380
EcoT22I	ATGCAT	1 cut(s)	293
FaeI	CATG	3 cut(s)	291, 295, 367
FaiI	YATR	5 cut(s)	36, 55, 289, 293, 365
FaqI	GGGAC	2 cut(s)	213, 236
FatI	CATG	3 cut(s)	287, 291, 363
Fnu4HI	GCNGC	1 cut(s)	219
Fsp4HI	GCNGC	1 cut(s)	219
FspBI	CTAG	1 cut(s)	200
GluI	GCNGC	1 cut(s)	219
HaeIII	GGCC	1 cut(s)	209
Hin1II	CATG	3 cut(s)	291, 295, 367
HincII	GTYRAC	1 cut(s)	100
HindII	GTYRAC	1 cut(s)	100
HinfI	GANTC	2 cut(s)	31, 239
HphI	GGTGA	1 cut(s)	135
Hpy166II	GTNNAC	2 cut(s)	100, 106
Hpy188I	TCNGA	3 cut(s)	25, 279, 386
Hpy188III	TCNNGA	2 cut(s)	331, 377
Hpy8I	GTNNAC	2 cut(s)	100, 106
HpyCH4III	ACNGT	2 cut(s)	97, 130
HpyCH4IV	ACGT	1 cut(s)	102
HpyCH4V	TGCA	2 cut(s)	158, 291
HpyF10VI	GCNNNNNNNGC	2 cut(s)	10, 215
HpyF3I	CTNAG	1 cut(s)	278
HpySE526I	ACGT	1 cut(s)	102
Hsp92II	CATG	3 cut(s)	291, 295, 367
LmnI	GCTCC	1 cut(s)	324
LpnPI	CCDG	7 cut(s)	94, 168, 198, 228, 283, 299, 341
Lsp1109I	GCAGC	1 cut(s)	205
MaeI	CTAG	1 cut(s)	200
MaeII	ACGT	1 cut(s)	102
MboII	GAAGA	1 cut(s)	275
MhlI	GDGCHC	1 cut(s)	321
MlsI	TGGCCA	1 cut(s)	209
MluCI	AATT	2 cut(s)	302, 380
MluNI	TGGCCA	1 cut(s)	209
MlyI	GAGTC	1 cut(s)	40
MnlI	CCTC	6 cut(s)	98, 129, 143, 327, 333, 333
Mox20I	TGGCCA	1 cut(s)	209
Mph1103I	ATGCAT	1 cut(s)	293
MroXI	GAANNNNTTC	1 cut(s)	174
MscI	TGGCCA	1 cut(s)	209
MseI	TTAA	1 cut(s)	60
Msp20I	TGGCCA	1 cut(s)	209
MwoI	GCNNNNNNNGC	2 cut(s)	10, 215
NlaIII	CATG	3 cut(s)	291, 295, 367
NlaIV	GGNNCC	1 cut(s)	344
NsiI	ATGCAT	1 cut(s)	293
NspI	RCATGY	1 cut(s)	291
PdmI	GAANNNNTTC	1 cut(s)	174
PfeI	GAWTC	1 cut(s)	239
PkrI	GCNGC	1 cut(s)	220
PleI	GAGTC	1 cut(s)	39
PpsI	GAGTC	1 cut(s)	39
PpuMI	RGGWCCY	1 cut(s)	152
Psp5II	RGGWCCY	1 cut(s)	152
PspN4I	GGNNCC	1 cut(s)	344
PspPI	GGNCC	1 cut(s)	152
PspPPI	RGGWCCY	1 cut(s)	152
RsaI	GTAC	1 cut(s)	113
RsaNI	GTAC	1 cut(s)	112
SaqAI	TTAA	1 cut(s)	60
SatI	GCNGC	1 cut(s)	219
Sau96I	GGNCC	1 cut(s)	152
SchI	GAGTC	1 cut(s)	40
SduI	GDGCHC	1 cut(s)	321
SetI	ASST	7 cut(s)	105, 113, 121, 154, 165, 220, 338
SfcI	CTRYAG	2 cut(s)	75, 93
SinI	GGWCC	1 cut(s)	152
SmlI	CTYRAG	2 cut(s)	179, 331
SmoI	CTYRAG	2 cut(s)	179, 331
Sse9I	AATT	2 cut(s)	302, 380
SspI	AATATT	1 cut(s)	175
SspMI	CTAG	1 cut(s)	200
TaaI	ACNGT	2 cut(s)	97, 130
TaiI	ACGT	1 cut(s)	105
TasI	AATT	2 cut(s)	302, 380
TfiI	GAWTC	1 cut(s)	239
Tru1I	TTAA	1 cut(s)	60
Tru9I	TTAA	1 cut(s)	60
TscAI	CASTG	1 cut(s)	48
TseI	GCWGC	1 cut(s)	218
TspDTI	ATGAA	3 cut(s)	252, 308, 352
TspRI	CASTG	1 cut(s)	48
VpaK11BI	GGWCC	1 cut(s)	152
XapI	RAATTY	1 cut(s)	380
XceI	RCATGY	1 cut(s)	291
XmnI	GAANNNNTTC	1 cut(s)	174
XspI	CTAG	1 cut(s)	200
Zsp2I	ATGCAT	1 cut(s)	293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.