PAS fold
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_1g27651 |
| rosa_chinensis | RchiOBHm_Chr1g0330501 RchiOBHm_Chr1g0341541 RchiOBHm_Chr3g0493181 RchiOBHm_Chr5g0068631 RchiOBHm_Chr7g0200611 RchiOBHm_Chr7g0235681 RchiOBHm_Chr7g0242661 |
| rosa_multiflora | Rmu_sc0002539.1_g000024 |
| rosa_roxburghii | Rroxscaffold_1G00071600 Rroxscaffold_3G00223660 Rroxscaffold_5G00346520 Rroxscaffold_5G00366050 |
| rosa_rugosa | Rorug05G0582300 |
| rosa_samantha | Rh3AG308700 Rh4BG032100 Rh5AG071000 Rh5AG405200 Rh5CG079900 Rh7AG127500 Rh7CG198000 |
| rosa_wichuraiana | Rw1G003250 Rw5G028180 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 220 |
| AcsI | RAATTY | 1 cut(s) | 298 |
| AgsI | TTSAA | 2 cut(s) | 149, 184 |
| AluBI | AGCT | 2 cut(s) | 143, 325 |
| AluI | AGCT | 2 cut(s) | 143, 325 |
| Alw26I | GTCTC | 1 cut(s) | 5 |
| AlwI | GGATC | 1 cut(s) | 220 |
| ApeKI | GCWGC | 3 cut(s) | 35, 250, 264 |
| ApoI | RAATTY | 1 cut(s) | 298 |
| AsuHPI | GGTGA | 1 cut(s) | 230 |
| AsuII | TTCGAA | 1 cut(s) | 92 |
| BbvI | GCAGC | 3 cut(s) | 47, 262, 276 |
| BcoDI | GTCTC | 1 cut(s) | 5 |
| BfaI | CTAG | 1 cut(s) | 158 |
| BfmI | CTRYAG | 1 cut(s) | 15 |
| BisI | GCNGC | 3 cut(s) | 36, 251, 265 |
| BlsI | GCNGC | 3 cut(s) | 37, 252, 266 |
| Bpu14I | TTCGAA | 1 cut(s) | 92 |
| BsaJI | CCNNGG | 2 cut(s) | 134, 207 |
| Bse1I | ACTGG | 1 cut(s) | 229 |
| BseDI | CCNNGG | 2 cut(s) | 134, 207 |
| BseGI | GGATG | 2 cut(s) | 87, 103 |
| BseNI | ACTGG | 1 cut(s) | 229 |
| BseXI | GCAGC | 3 cut(s) | 47, 262, 276 |
| BseYI | CCCAGC | 1 cut(s) | 260 |
| BslFI | GGGAC | 1 cut(s) | 137 |
| BsmAI | GTCTC | 1 cut(s) | 5 |
| BsmFI | GGGAC | 1 cut(s) | 137 |
| Bsp119I | TTCGAA | 1 cut(s) | 92 |
| Bsp143I | GATC | 1 cut(s) | 212 |
| BspMAI | CTGCAG | 1 cut(s) | 19 |
| BspPI | GGATC | 1 cut(s) | 220 |
| BspT104I | TTCGAA | 1 cut(s) | 92 |
| BsrI | ACTGG | 1 cut(s) | 229 |
| BssECI | CCNNGG | 2 cut(s) | 134, 207 |
| BssMI | GATC | 1 cut(s) | 212 |
| BssT1I | CCWWGG | 2 cut(s) | 134, 207 |
| BstBI | TTCGAA | 1 cut(s) | 92 |
| BstEII | GGTNACC | 1 cut(s) | 352 |
| BstF5I | GGATG | 2 cut(s) | 87, 103 |
| BstKTI | GATC | 1 cut(s) | 215 |
| BstMAI | GTCTC | 1 cut(s) | 5 |
| BstMBI | GATC | 1 cut(s) | 212 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 193, 202 |
| BstPI | GGTNACC | 1 cut(s) | 352 |
| BstSFI | CTRYAG | 1 cut(s) | 15 |
| BstV1I | GCAGC | 3 cut(s) | 47, 262, 276 |
| BstX2I | RGATCY | 1 cut(s) | 212 |
| BstYI | RGATCY | 1 cut(s) | 212 |
| BtsCI | GGATG | 2 cut(s) | 87, 103 |
| BtsI | GCAGTG | 1 cut(s) | 235 |
| BtsIMutI | CAGTG | 1 cut(s) | 235 |
| CviJI | RGCY | 6 cut(s) | 112, 129, 143, 196, 205, 325 |
| CviKI_1 | RGCY | 6 cut(s) | 112, 129, 143, 196, 205, 325 |
| DpnI | GATC | 1 cut(s) | 214 |
| DpnII | GATC | 1 cut(s) | 212 |
| Eco130I | CCWWGG | 2 cut(s) | 134, 207 |
| Eco91I | GGTNACC | 1 cut(s) | 352 |
| EcoO65I | GGTNACC | 1 cut(s) | 352 |
| EcoT14I | CCWWGG | 2 cut(s) | 134, 207 |
| ErhI | CCWWGG | 2 cut(s) | 134, 207 |
| FaqI | GGGAC | 1 cut(s) | 137 |
| FauNDI | CATATG | 1 cut(s) | 52 |
| Fnu4HI | GCNGC | 3 cut(s) | 36, 251, 265 |
| FokI | GGATG | 2 cut(s) | 90, 94 |
| Fsp4HI | GCNGC | 3 cut(s) | 36, 251, 265 |
| FspBI | CTAG | 1 cut(s) | 158 |
| GluI | GCNGC | 3 cut(s) | 36, 251, 265 |
| GsaI | CCCAGC | 1 cut(s) | 264 |
| HindIII | AAGCTT | 1 cut(s) | 323 |
| HinfI | GANTC | 2 cut(s) | 85, 154 |
| HphI | GGTGA | 1 cut(s) | 230 |
| Hpy188I | TCNGA | 1 cut(s) | 283 |
| Hpy188III | TCNNGA | 1 cut(s) | 158 |
| HpyAV | CCTTC | 1 cut(s) | 88 |
| HpyCH4V | TGCA | 1 cut(s) | 17 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 193, 202 |
| Kzo9I | GATC | 1 cut(s) | 212 |
| LpnPI | CCDG | 4 cut(s) | 81, 201, 210, 274 |
| Lsp1109I | GCAGC | 3 cut(s) | 47, 262, 276 |
| MaeI | CTAG | 1 cut(s) | 158 |
| MaeIII | GTNAC | 1 cut(s) | 352 |
| MalI | GATC | 1 cut(s) | 214 |
| MboI | GATC | 1 cut(s) | 212 |
| MboII | GAAGA | 1 cut(s) | 83 |
| MflI | RGATCY | 1 cut(s) | 212 |
| MluCI | AATT | 1 cut(s) | 298 |
| MnlI | CCTC | 2 cut(s) | 25, 123 |
| MseI | TTAA | 3 cut(s) | 21, 192, 308 |
| MslI | CAYNNNNRTG | 1 cut(s) | 272 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 193, 202 |
| NdeI | CATATG | 1 cut(s) | 52 |
| NdeII | GATC | 1 cut(s) | 212 |
| NspV | TTCGAA | 1 cut(s) | 92 |
| PfeI | GAWTC | 2 cut(s) | 85, 154 |
| PkrI | GCNGC | 3 cut(s) | 37, 252, 266 |
| PspEI | GGTNACC | 1 cut(s) | 352 |
| PspFI | CCCAGC | 1 cut(s) | 260 |
| PstI | CTGCAG | 1 cut(s) | 19 |
| PsuI | RGATCY | 1 cut(s) | 212 |
| RseI | CAYNNNNRTG | 1 cut(s) | 272 |
| SaqAI | TTAA | 3 cut(s) | 21, 192, 308 |
| SatI | GCNGC | 3 cut(s) | 36, 251, 265 |
| Sau3AI | GATC | 1 cut(s) | 212 |
| SetI | ASST | 4 cut(s) | 99, 145, 327, 359 |
| SfcI | CTRYAG | 1 cut(s) | 15 |
| SfuI | TTCGAA | 1 cut(s) | 92 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 272 |
| Sse9I | AATT | 1 cut(s) | 298 |
| SspMI | CTAG | 1 cut(s) | 158 |
| StyI | CCWWGG | 2 cut(s) | 134, 207 |
| TaqI | TCGA | 2 cut(s) | 92, 340 |
| TasI | AATT | 1 cut(s) | 298 |
| TfiI | GAWTC | 2 cut(s) | 85, 154 |
| Tru1I | TTAA | 3 cut(s) | 21, 192, 308 |
| Tru9I | TTAA | 3 cut(s) | 21, 192, 308 |
| TscAI | CASTG | 1 cut(s) | 235 |
| TseI | GCWGC | 3 cut(s) | 35, 250, 264 |
| TspDTI | ATGAA | 4 cut(s) | 77, 92, 98, 290 |
| TspRI | CASTG | 1 cut(s) | 235 |
| XapI | RAATTY | 1 cut(s) | 298 |
| XbaI | TCTAGA | 1 cut(s) | 157 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 75 |
| XspI | CTAG | 1 cut(s) | 158 |