Rh5CG079900

PAS fold

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0008833
Physical Location & Seq
Forward (+)
6074116 .. 6092726
18611 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG079900.1

Sequence Viewer

Length: 423 bp
ATGGTCAAAGAGACTGCAGTTAATGTTGATGAGGCAGCAAGAGAACTTCCATATGCCAATATGAAACCAGAAGATTTATGGATGAATCATTCGAAGGTCGTTCATCCAAAGCCTCATAGACGGGACAGCCCCCCTTGGAGAGCTATTCAAAAGATTCTAGACAGTGGAGAACAGATAGGATTGAAGCATTTTAAGCCTATAAAGCCCTTGGGATCTGGTGATACTGGCAGCCTTAGAGAAAATGGAAAGAAAACCATTGATCTTCTGCACGGCGTCCATGTCATCTTGGTCTTCTTCTCTCCAATTGTACTGAGAGAATTTGACTACTACGGTGCACTGACTTCCCTTCTGTGGCTTCAAGCTCGATCAACAGATATAGCCAAAAGATTGGTGCAATTGTATGACTTGCATAGCTTGCGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0007623 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009628 GO:0009637 GO:0009638 GO:0009657 GO:0009658 GO:0009785 GO:0009881 GO:0009882 GO:0009898 GO:0009902 GO:0009903 GO:0009904 GO:0009986 GO:0009987 GO:0010119 GO:0010155 GO:0010181 GO:0010359 GO:0010360 GO:0010361 GO:0010362 GO:0016020 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019750 GO:0022898 GO:0023052 GO:0030522 GO:0032409 GO:0032410 GO:0032412 GO:0032413 GO:0032553 GO:0032879 GO:0034762 GO:0034763 GO:0034765 GO:0034766 GO:0035556 GO:0036094 GO:0036211 GO:0038023 GO:0042802 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0043271 GO:0043412 GO:0044070 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046777 GO:0048037 GO:0048511 GO:0048519 GO:0050662 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051051 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051644 GO:0051649 GO:0051656 GO:0051667 GO:0051716 GO:0060089 GO:0065007 GO:0065009 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0097367 GO:0098552 GO:0098562 GO:0104004 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1903792 GO:1903959 GO:1903960 GO:1904062
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAS_9 Pkinase

Protein Analysis

140

Amino Acids

16.02

Weight (kDa)

9.4

Isoelectric Point (pI)

41.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 220
AcsI RAATTY 1 cut(s) 317
AcyI GRCGYC 1 cut(s) 273
AfaI GTAC 1 cut(s) 309
AfiI CCNNNNNNNGG 1 cut(s) 351
AgsI TTSAA 3 cut(s) 149, 184, 359
AluBI AGCT 3 cut(s) 143, 362, 414
AluI AGCT 3 cut(s) 143, 362, 414
Alw21I GWGCWC 1 cut(s) 337
Alw26I GTCTC 1 cut(s) 5
Alw44I GTGCAC 1 cut(s) 333
AlwI GGATC 1 cut(s) 220
ApaLI GTGCAC 1 cut(s) 333
ApeKI GCWGC 2 cut(s) 35, 228
ApoI RAATTY 1 cut(s) 317
AsuHPI GGTGA 1 cut(s) 230
AsuII TTCGAA 1 cut(s) 92
BaeGI GKGCMC 1 cut(s) 337
BbsI GAAGAC 1 cut(s) 283
Bbv12I GWGCWC 1 cut(s) 337
BbvI GCAGC 2 cut(s) 47, 240
BceAI ACGGC 1 cut(s) 286
BcoDI GTCTC 1 cut(s) 5
BfaI CTAG 1 cut(s) 158
BfmI CTRYAG 1 cut(s) 15
BisI GCNGC 2 cut(s) 36, 229
BlsI GCNGC 2 cut(s) 37, 230
BpiI GAAGAC 1 cut(s) 283
Bpu14I TTCGAA 1 cut(s) 92
BsaHI GRCGYC 1 cut(s) 273
BsaJI CCNNGG 2 cut(s) 134, 207
Bsc4I CCNNNNNNNGG 1 cut(s) 351
Bse1I ACTGG 1 cut(s) 229
BseDI CCNNGG 2 cut(s) 134, 207
BseGI GGATG 2 cut(s) 87, 103
BseLI CCNNNNNNNGG 1 cut(s) 351
BseMII CTCAG 1 cut(s) 302
BseNI ACTGG 1 cut(s) 229
BseSI GKGCMC 1 cut(s) 337
BseXI GCAGC 2 cut(s) 47, 240
BsgI GTGCAG 1 cut(s) 251
BsiHKAI GWGCWC 1 cut(s) 337
BslFI GGGAC 1 cut(s) 137
BslI CCNNNNNNNGG 1 cut(s) 351
BsmAI GTCTC 1 cut(s) 5
BsmFI GGGAC 1 cut(s) 137
Bsp119I TTCGAA 1 cut(s) 92
Bsp1286I GDGCHC 1 cut(s) 337
Bsp143I GATC 3 cut(s) 212, 259, 365
BspCNI CTCAG 1 cut(s) 303
BspMAI CTGCAG 1 cut(s) 19
BspPI GGATC 1 cut(s) 220
BspT104I TTCGAA 1 cut(s) 92
BsrI ACTGG 1 cut(s) 229
BssECI CCNNGG 2 cut(s) 134, 207
BssMI GATC 3 cut(s) 212, 259, 365
BssNI GRCGYC 1 cut(s) 273
BssT1I CCWWGG 2 cut(s) 134, 207
Bst4CI ACNGT 2 cut(s) 164, 332
BstACI GRCGYC 1 cut(s) 273
BstAPI GCANNNNNTGC 1 cut(s) 415
BstBI TTCGAA 1 cut(s) 92
BstC8I GCNNGC 1 cut(s) 416
BstDEI CTNAG 2 cut(s) 233, 311
BstF5I GGATG 2 cut(s) 87, 103
BstKTI GATC 3 cut(s) 215, 262, 368
BstMAI GTCTC 1 cut(s) 5
BstMBI GATC 3 cut(s) 212, 259, 365
BstMWI GCNNNNNNNGC 3 cut(s) 193, 202, 415
BstSFI CTRYAG 1 cut(s) 15
BstSLI GKGCMC 1 cut(s) 337
BstV1I GCAGC 2 cut(s) 47, 240
BstV2I GAAGAC 1 cut(s) 283
BstX2I RGATCY 1 cut(s) 212
BstXI CCANNNNNNTGG 1 cut(s) 388
BstYI RGATCY 1 cut(s) 212
BtsCI GGATG 2 cut(s) 87, 103
BtsIMutI CAGTG 2 cut(s) 169, 335
Cac8I GCNNGC 1 cut(s) 416
CseI GACGC 1 cut(s) 262
Csp6I GTAC 1 cut(s) 308
CviAII CATG 1 cut(s) 278
CviQI GTAC 1 cut(s) 308
DdeI CTNAG 2 cut(s) 233, 311
DpnI GATC 3 cut(s) 214, 261, 367
DpnII GATC 3 cut(s) 212, 259, 365
Eco130I CCWWGG 2 cut(s) 134, 207
EcoT14I CCWWGG 2 cut(s) 134, 207
ErhI CCWWGG 2 cut(s) 134, 207
FaeI CATG 1 cut(s) 281
FaqI GGGAC 1 cut(s) 137
FatI CATG 1 cut(s) 277
FauNDI CATATG 1 cut(s) 52
Fnu4HI GCNGC 2 cut(s) 36, 229
FokI GGATG 2 cut(s) 90, 94
Fsp4HI GCNGC 2 cut(s) 36, 229
FspBI CTAG 1 cut(s) 158
GluI GCNGC 2 cut(s) 36, 229
HgaI GACGC 1 cut(s) 262
Hin1I GRCGYC 1 cut(s) 273
Hin1II CATG 1 cut(s) 281
HinfI GANTC 2 cut(s) 85, 154
HphI GGTGA 1 cut(s) 230
Hpy166II GTNNAC 1 cut(s) 335
Hpy188III TCNNGA 1 cut(s) 158
Hpy8I GTNNAC 1 cut(s) 335
HpyAV CCTTC 2 cut(s) 88, 356
HpyCH4III ACNGT 2 cut(s) 164, 332
HpyCH4V TGCA 5 cut(s) 17, 268, 335, 394, 409
HpyF10VI GCNNNNNNNGC 3 cut(s) 193, 202, 415
HpyF3I CTNAG 2 cut(s) 233, 311
Hsp92I GRCGYC 1 cut(s) 273
Hsp92II CATG 1 cut(s) 281
Kzo9I GATC 3 cut(s) 212, 259, 365
LpnPI CCDG 3 cut(s) 81, 201, 210
Lsp1109I GCAGC 2 cut(s) 47, 240
MaeI CTAG 1 cut(s) 158
MalI GATC 3 cut(s) 214, 261, 367
MboI GATC 3 cut(s) 212, 259, 365
MboII GAAGA 4 cut(s) 83, 254, 283, 286
MfeI CAATTG 2 cut(s) 303, 395
MflI RGATCY 1 cut(s) 212
MhlI GDGCHC 1 cut(s) 337
MluCI AATT 3 cut(s) 303, 317, 395
MnlI CCTC 2 cut(s) 25, 123
MseI TTAA 3 cut(s) 21, 192, 421
MunI CAATTG 2 cut(s) 303, 395
MwoI GCNNNNNNNGC 3 cut(s) 193, 202, 415
NdeI CATATG 1 cut(s) 52
NdeII GATC 3 cut(s) 212, 259, 365
NlaIII CATG 1 cut(s) 281
NspV TTCGAA 1 cut(s) 92
PfeI GAWTC 2 cut(s) 85, 154
PkrI GCNGC 2 cut(s) 37, 230
PstI CTGCAG 1 cut(s) 19
PsuI RGATCY 1 cut(s) 212
RsaI GTAC 1 cut(s) 309
RsaNI GTAC 1 cut(s) 308
SaqAI TTAA 3 cut(s) 21, 192, 421
SatI GCNGC 2 cut(s) 36, 229
Sau3AI GATC 3 cut(s) 212, 259, 365
SduI GDGCHC 1 cut(s) 337
SetI ASST 4 cut(s) 99, 145, 364, 416
SfcI CTRYAG 1 cut(s) 15
SfuI TTCGAA 1 cut(s) 92
Sse9I AATT 3 cut(s) 303, 317, 395
SspMI CTAG 1 cut(s) 158
StyI CCWWGG 2 cut(s) 134, 207
TaaI ACNGT 2 cut(s) 164, 332
TaqI TCGA 2 cut(s) 92, 364
TasI AATT 3 cut(s) 303, 317, 395
TatI WGTACW 1 cut(s) 307
TfiI GAWTC 2 cut(s) 85, 154
Tru1I TTAA 3 cut(s) 21, 192, 421
Tru9I TTAA 3 cut(s) 21, 192, 421
TscAI CASTG 2 cut(s) 169, 342
TseI GCWGC 2 cut(s) 35, 228
TspDTI ATGAA 3 cut(s) 77, 92, 98
TspRI CASTG 2 cut(s) 169, 342
VneI GTGCAC 1 cut(s) 333
XapI RAATTY 1 cut(s) 317
XbaI TCTAGA 1 cut(s) 157
XcmI CCANNNNNNNNNTGG 1 cut(s) 75
XspI CTAG 1 cut(s) 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.