PAS fold
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_1g27651 |
| rosa_chinensis | RchiOBHm_Chr1g0330501 RchiOBHm_Chr1g0341541 RchiOBHm_Chr3g0493181 RchiOBHm_Chr5g0068631 RchiOBHm_Chr7g0200611 RchiOBHm_Chr7g0235681 RchiOBHm_Chr7g0242661 |
| rosa_multiflora | Rmu_sc0002539.1_g000024 |
| rosa_roxburghii | Rroxscaffold_1G00071600 Rroxscaffold_3G00223660 Rroxscaffold_5G00346520 Rroxscaffold_5G00366050 |
| rosa_rugosa | Rorug05G0582300 |
| rosa_samantha | Rh3AG308700 Rh4BG032100 Rh5AG071000 Rh5AG405200 Rh5CG079900 Rh7AG127500 Rh7CG198000 |
| rosa_wichuraiana | Rw1G003250 Rw5G028180 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 564 |
| AccII | CGCG | 1 cut(s) | 60 |
| AciI | CCGC | 2 cut(s) | 47, 58 |
| AclWI | GGATC | 2 cut(s) | 104, 565 |
| AcuI | CTGAAG | 1 cut(s) | 339 |
| AfaI | GTAC | 4 cut(s) | 53, 168, 252, 270 |
| AgsI | TTSAA | 3 cut(s) | 95, 494, 529 |
| AjiI | CACGTC | 1 cut(s) | 160 |
| AluBI | AGCT | 3 cut(s) | 33, 43, 488 |
| AluI | AGCT | 3 cut(s) | 33, 43, 488 |
| Alw26I | GTCTC | 2 cut(s) | 98, 350 |
| AlwI | GGATC | 2 cut(s) | 104, 565 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 119 |
| ApeKI | GCWGC | 2 cut(s) | 223, 380 |
| AspS9I | GGNCC | 1 cut(s) | 98 |
| AsuHPI | GGTGA | 1 cut(s) | 575 |
| AsuII | TTCGAA | 1 cut(s) | 437 |
| AsuNHI | GCTAGC | 1 cut(s) | 43 |
| AvaII | GGWCC | 1 cut(s) | 98 |
| AxyI | CCTNAGG | 1 cut(s) | 553 |
| BbvI | GCAGC | 2 cut(s) | 235, 392 |
| BccI | CCATC | 1 cut(s) | 272 |
| BclI | TGATCA | 1 cut(s) | 235 |
| BcoDI | GTCTC | 2 cut(s) | 98, 350 |
| BfaI | CTAG | 2 cut(s) | 44, 503 |
| BfmI | CTRYAG | 2 cut(s) | 221, 360 |
| BfuAI | ACCTGC | 1 cut(s) | 564 |
| BisI | GCNGC | 3 cut(s) | 58, 224, 381 |
| BlsI | GCNGC | 3 cut(s) | 59, 225, 382 |
| Bme18I | GGWCC | 1 cut(s) | 98 |
| BmgBI | CACGTC | 1 cut(s) | 160 |
| BmgT120I | GGNCC | 1 cut(s) | 98 |
| BmsI | GCATC | 2 cut(s) | 32, 388 |
| BmtI | GCTAGC | 1 cut(s) | 47 |
| Bpu14I | TTCGAA | 1 cut(s) | 437 |
| BsaJI | CCNNGG | 1 cut(s) | 479 |
| Bse1I | ACTGG | 2 cut(s) | 351, 574 |
| Bse21I | CCTNAGG | 1 cut(s) | 553 |
| BseDI | CCNNGG | 1 cut(s) | 479 |
| BseGI | GGATG | 3 cut(s) | 23, 432, 448 |
| BseMII | CTCAG | 1 cut(s) | 93 |
| BseNI | ACTGG | 2 cut(s) | 351, 574 |
| BseXI | GCAGC | 2 cut(s) | 235, 392 |
| Bsh1236I | CGCG | 1 cut(s) | 60 |
| BslFI | GGGAC | 1 cut(s) | 482 |
| BsmAI | GTCTC | 2 cut(s) | 98, 350 |
| BsmFI | GGGAC | 1 cut(s) | 482 |
| Bsp119I | TTCGAA | 1 cut(s) | 437 |
| Bsp1407I | TGTACA | 1 cut(s) | 166 |
| Bsp143I | GATC | 3 cut(s) | 109, 235, 557 |
| BspACI | CCGC | 2 cut(s) | 47, 58 |
| BspCNI | CTCAG | 1 cut(s) | 94 |
| BspFNI | CGCG | 1 cut(s) | 60 |
| BspMAI | CTGCAG | 2 cut(s) | 225, 364 |
| BspMI | ACCTGC | 1 cut(s) | 564 |
| BspOI | GCTAGC | 1 cut(s) | 47 |
| BspPI | GGATC | 2 cut(s) | 104, 565 |
| BspT104I | TTCGAA | 1 cut(s) | 437 |
| BsrGI | TGTACA | 1 cut(s) | 166 |
| BsrI | ACTGG | 2 cut(s) | 351, 574 |
| BssECI | CCNNGG | 1 cut(s) | 479 |
| BssMI | GATC | 3 cut(s) | 109, 235, 557 |
| BssT1I | CCWWGG | 1 cut(s) | 479 |
| Bst4CI | ACNGT | 5 cut(s) | 121, 166, 255, 328, 509 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 229 |
| BstAUI | TGTACA | 1 cut(s) | 166 |
| BstBI | TTCGAA | 1 cut(s) | 437 |
| BstC8I | GCNNGC | 1 cut(s) | 45 |
| BstDEI | CTNAG | 3 cut(s) | 37, 102, 553 |
| BstF5I | GGATG | 3 cut(s) | 23, 432, 448 |
| BstFNI | CGCG | 1 cut(s) | 60 |
| BstKTI | GATC | 3 cut(s) | 112, 238, 560 |
| BstMAI | GTCTC | 2 cut(s) | 98, 350 |
| BstMBI | GATC | 3 cut(s) | 109, 235, 557 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 229, 295, 547 |
| BstSFI | CTRYAG | 2 cut(s) | 221, 360 |
| BstUI | CGCG | 1 cut(s) | 60 |
| BstV1I | GCAGC | 2 cut(s) | 235, 392 |
| BstX2I | RGATCY | 1 cut(s) | 557 |
| BstYI | RGATCY | 1 cut(s) | 557 |
| Bsu36I | CCTNAGG | 1 cut(s) | 553 |
| BtrI | CACGTC | 1 cut(s) | 160 |
| BtsCI | GGATG | 3 cut(s) | 23, 432, 448 |
| BtsIMutI | CAGTG | 1 cut(s) | 514 |
| BveI | ACCTGC | 1 cut(s) | 564 |
| Cac8I | GCNNGC | 1 cut(s) | 45 |
| CaiI | CAGNNNCTG | 1 cut(s) | 119 |
| Cfr13I | GGNCC | 1 cut(s) | 98 |
| Csp6I | GTAC | 4 cut(s) | 52, 167, 251, 269 |
| CviQI | GTAC | 4 cut(s) | 52, 167, 251, 269 |
| DdeI | CTNAG | 3 cut(s) | 37, 102, 553 |
| DpnI | GATC | 3 cut(s) | 111, 237, 559 |
| DpnII | GATC | 3 cut(s) | 109, 235, 557 |
| Eco130I | CCWWGG | 1 cut(s) | 479 |
| Eco47I | GGWCC | 1 cut(s) | 98 |
| Eco57I | CTGAAG | 1 cut(s) | 339 |
| Eco81I | CCTNAGG | 1 cut(s) | 553 |
| EcoO109I | RGGNCCY | 1 cut(s) | 98 |
| EcoT14I | CCWWGG | 1 cut(s) | 479 |
| ErhI | CCWWGG | 1 cut(s) | 479 |
| FaiI | YATR | 8 cut(s) | 6, 230, 306, 407, 424, 462, 545, 583 |
| FaqI | GGGAC | 1 cut(s) | 482 |
| FbaI | TGATCA | 1 cut(s) | 235 |
| Fnu4HI | GCNGC | 3 cut(s) | 58, 224, 381 |
| FokI | GGATG | 3 cut(s) | 10, 435, 439 |
| Fsp4HI | GCNGC | 3 cut(s) | 58, 224, 381 |
| FspBI | CTAG | 2 cut(s) | 44, 503 |
| GluI | GCNGC | 3 cut(s) | 58, 224, 381 |
| HinfI | GANTC | 3 cut(s) | 87, 430, 499 |
| HphI | GGTGA | 1 cut(s) | 575 |
| Hpy188I | TCNGA | 2 cut(s) | 15, 28 |
| Hpy188III | TCNNGA | 4 cut(s) | 205, 317, 395, 503 |
| HpyAV | CCTTC | 2 cut(s) | 101, 433 |
| HpyCH4III | ACNGT | 5 cut(s) | 121, 166, 255, 328, 509 |
| HpyCH4IV | ACGT | 1 cut(s) | 159 |
| HpyCH4V | TGCA | 5 cut(s) | 23, 84, 223, 304, 362 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 229, 295, 547 |
| HpyF3I | CTNAG | 3 cut(s) | 37, 102, 553 |
| HpySE526I | ACGT | 1 cut(s) | 159 |
| Ksp22I | TGATCA | 1 cut(s) | 235 |
| Kzo9I | GATC | 3 cut(s) | 109, 235, 557 |
| Lsp1109I | GCAGC | 2 cut(s) | 235, 392 |
| LweI | GCATC | 2 cut(s) | 32, 388 |
| MaeI | CTAG | 2 cut(s) | 44, 503 |
| MaeII | ACGT | 1 cut(s) | 159 |
| MaeIII | GTNAC | 2 cut(s) | 160, 322 |
| MalI | GATC | 3 cut(s) | 111, 237, 559 |
| MboI | GATC | 3 cut(s) | 109, 235, 557 |
| MboII | GAAGA | 3 cut(s) | 74, 87, 428 |
| MfeI | CAATTG | 1 cut(s) | 141 |
| MflI | RGATCY | 1 cut(s) | 557 |
| MluCI | AATT | 3 cut(s) | 79, 141, 178 |
| MmeI | TCCRAC | 1 cut(s) | 51 |
| MnlI | CCTC | 4 cut(s) | 130, 309, 370, 468 |
| MseI | TTAA | 3 cut(s) | 366, 537, 586 |
| MunI | CAATTG | 1 cut(s) | 141 |
| MvnI | CGCG | 1 cut(s) | 60 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 229, 295, 547 |
| NdeII | GATC | 3 cut(s) | 109, 235, 557 |
| NheI | GCTAGC | 1 cut(s) | 43 |
| NmuCI | GTSAC | 1 cut(s) | 160 |
| NspV | TTCGAA | 1 cut(s) | 437 |
| PfeI | GAWTC | 3 cut(s) | 87, 430, 499 |
| PkrI | GCNGC | 3 cut(s) | 59, 225, 382 |
| PpuMI | RGGWCCY | 1 cut(s) | 98 |
| Psp5II | RGGWCCY | 1 cut(s) | 98 |
| PspPI | GGNCC | 1 cut(s) | 98 |
| PspPPI | RGGWCCY | 1 cut(s) | 98 |
| PstI | CTGCAG | 2 cut(s) | 225, 364 |
| PstNI | CAGNNNCTG | 1 cut(s) | 119 |
| PsuI | RGATCY | 1 cut(s) | 557 |
| RsaI | GTAC | 4 cut(s) | 53, 168, 252, 270 |
| RsaNI | GTAC | 4 cut(s) | 52, 167, 251, 269 |
| SaqAI | TTAA | 3 cut(s) | 366, 537, 586 |
| SatI | GCNGC | 3 cut(s) | 58, 224, 381 |
| Sau3AI | GATC | 3 cut(s) | 109, 235, 557 |
| Sau96I | GGNCC | 1 cut(s) | 98 |
| SetI | ASST | 7 cut(s) | 35, 45, 103, 162, 444, 490, 578 |
| SfaNI | GCATC | 2 cut(s) | 32, 388 |
| SfcI | CTRYAG | 2 cut(s) | 221, 360 |
| SfuI | TTCGAA | 1 cut(s) | 437 |
| SinI | GGWCC | 1 cut(s) | 98 |
| Sse9I | AATT | 3 cut(s) | 79, 141, 178 |
| SsiI | CCGC | 2 cut(s) | 47, 58 |
| SspI | AATATT | 1 cut(s) | 69 |
| SspMI | CTAG | 2 cut(s) | 44, 503 |
| StyI | CCWWGG | 1 cut(s) | 479 |
| TaaI | ACNGT | 5 cut(s) | 121, 166, 255, 328, 509 |
| TaiI | ACGT | 1 cut(s) | 162 |
| TaqI | TCGA | 1 cut(s) | 437 |
| TasI | AATT | 3 cut(s) | 79, 141, 178 |
| TatI | WGTACW | 4 cut(s) | 51, 166, 250, 268 |
| TauI | GCSGC | 1 cut(s) | 60 |
| TfiI | GAWTC | 3 cut(s) | 87, 430, 499 |
| Tru1I | TTAA | 3 cut(s) | 366, 537, 586 |
| Tru9I | TTAA | 3 cut(s) | 366, 537, 586 |
| TscAI | CASTG | 1 cut(s) | 514 |
| TseFI | GTSAC | 1 cut(s) | 160 |
| TseI | GCWGC | 2 cut(s) | 223, 380 |
| Tsp45I | GTSAC | 1 cut(s) | 160 |
| TspDTI | ATGAA | 4 cut(s) | 206, 422, 437, 443 |
| TspRI | CASTG | 1 cut(s) | 514 |
| VpaK11BI | GGWCC | 1 cut(s) | 98 |
| XbaI | TCTAGA | 1 cut(s) | 502 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 420 |
| XspI | CTAG | 2 cut(s) | 44, 503 |