Rh3AG308700

PAS fold

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0008833
Physical Location & Seq
Reverse (-)
38684716 .. 38689319
4604 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG308700.1

Sequence Viewer

Length: 660 bp
ATGGAGCTGATCGATGTAAAACTCCAAAAATTACTGTGGGCAGCTCGTCAGAAAGAGATGGCTACACATTCAGTAACTGAGCTTGTGCAGGCAGTGAGGAGACCGAGGTCACTTAGTGAATCGACAAATCGTCCCTTTAGAAAGTCTGGAGGTGGCGGTAGGGGAGAGAAGGTAATTGAAGCTCTTGCGAGGAGAAACTCCGAGAGTTTTCCTAGGAGAAACTCAGAGAATGTGGCACCACCTAGACGTAACTCACTTGGGGATGCTAAAATCTCAATGCAGTGTATCAATGAGTTTCCTGAAAAGAAACAGAAAAAATCTAGACGGCGCTCTTTCATGGGTCAGCACATTGAGCCTCTGCATAACTCTATTCCTGAAGTTACAGTAAAAGAGAGTGAAAAACTGGTCAAAGAGACTGCAGTTAATGTTGATGAGGCAGCAAGAGAACTTCCAGATGCCAATATGAAACCAGAAGATTTATGGATGAATCATTCGAAGGTCGTTCATCCAAAGCCTCATAGACGGGACAGCCCCCCTTGGAGAGCTATTCAAAAGATTCTAGACAGTGGAGAACAGATAGGATTGAAACATTTTAAGCCTATAAAGCCCTTAGGATCTGGTGATACTGGCAGTTCTACAGCAATATTTGCTCTGCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0007623 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009628 GO:0009637 GO:0009638 GO:0009657 GO:0009658 GO:0009785 GO:0009881 GO:0009882 GO:0009898 GO:0009902 GO:0009903 GO:0009904 GO:0009986 GO:0009987 GO:0010119 GO:0010155 GO:0010181 GO:0010359 GO:0010360 GO:0010361 GO:0010362 GO:0016020 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019750 GO:0022898 GO:0023052 GO:0030522 GO:0032409 GO:0032410 GO:0032412 GO:0032413 GO:0032553 GO:0032879 GO:0034762 GO:0034763 GO:0034765 GO:0034766 GO:0035556 GO:0036094 GO:0036211 GO:0038023 GO:0042802 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0043271 GO:0043412 GO:0044070 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046777 GO:0048037 GO:0048511 GO:0048519 GO:0050662 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051051 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051644 GO:0051649 GO:0051656 GO:0051667 GO:0051716 GO:0060089 GO:0065007 GO:0065009 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0097367 GO:0098552 GO:0098562 GO:0104004 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1903792 GO:1903959 GO:1903960 GO:1904062
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAS_9 Pkinase

Protein Analysis

219

Amino Acids

24.75

Weight (kDa)

10.07

Isoelectric Point (pI)

62.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 235
AciI CCGC 1 cut(s) 156
AclWI GGATC 1 cut(s) 622
AcuI CTGAAG 1 cut(s) 396
AdeI CACNNNGTG 1 cut(s) 116
AgsI TTSAA 3 cut(s) 179, 551, 586
AhdI GACNNNNNGTC 1 cut(s) 129
AluBI AGCT 5 cut(s) 7, 44, 82, 182, 545
AluI AGCT 5 cut(s) 7, 44, 82, 182, 545
Alw26I GTCTC 2 cut(s) 94, 407
AlwI GGATC 1 cut(s) 622
AlwNI CAGNNNCTG 1 cut(s) 77
ApeKI GCWGC 2 cut(s) 41, 437
AspA2I CCTAGG 1 cut(s) 212
AspLEI GCGC 1 cut(s) 330
AsuHPI GGTGA 1 cut(s) 632
AsuII TTCGAA 1 cut(s) 494
AvrII CCTAGG 1 cut(s) 212
AxyI CCTNAGG 1 cut(s) 610
BanI GGYRCC 1 cut(s) 235
BbvI GCAGC 2 cut(s) 53, 449
BccI CCATC 1 cut(s) 52
BceAI ACGGC 1 cut(s) 341
BcoDI GTCTC 2 cut(s) 94, 407
BfaI CTAG 4 cut(s) 213, 243, 321, 560
BfmI CTRYAG 2 cut(s) 417, 636
BfoI RGCGCY 1 cut(s) 331
BisI GCNGC 2 cut(s) 42, 438
BlnI CCTAGG 1 cut(s) 212
BlsI GCNGC 2 cut(s) 43, 439
BmeRI GACNNNNNGTC 1 cut(s) 129
BmiI GGNNCC 1 cut(s) 237
BmsI GCATC 2 cut(s) 253, 445
BoxI GACNNNNGTC 1 cut(s) 106
BpmI CTGGAG 1 cut(s) 168
Bpu14I TTCGAA 1 cut(s) 494
Bsa29I ATCGAT 1 cut(s) 12
BsaI GGTCTC 1 cut(s) 94
BsaJI CCNNGG 3 cut(s) 104, 212, 536
BsaXI ACNNNNNCTCC 2 cut(s) 156, 186
Bse1I ACTGG 2 cut(s) 408, 631
Bse21I CCTNAGG 1 cut(s) 610
BseCI ATCGAT 1 cut(s) 12
BseDI CCNNGG 3 cut(s) 104, 212, 536
BseGI GGATG 3 cut(s) 268, 489, 505
BseMII CTCAG 2 cut(s) 69, 237
BseNI ACTGG 2 cut(s) 408, 631
BseRI GAGGAG 2 cut(s) 112, 205
BseXI GCAGC 2 cut(s) 53, 449
BsgI GTGCAG 1 cut(s) 107
BshNI GGYRCC 1 cut(s) 235
BshVI ATCGAT 1 cut(s) 12
BslFI GGGAC 2 cut(s) 117, 539
BsmAI GTCTC 2 cut(s) 94, 407
BsmFI GGGAC 2 cut(s) 117, 539
Bso31I GGTCTC 1 cut(s) 94
Bsp119I TTCGAA 1 cut(s) 494
Bsp143I GATC 2 cut(s) 9, 614
BspACI CCGC 1 cut(s) 156
BspCNI CTCAG 2 cut(s) 70, 236
BspDI ATCGAT 1 cut(s) 12
BspLI GGNNCC 1 cut(s) 237
BspMAI CTGCAG 1 cut(s) 421
BspPI GGATC 1 cut(s) 622
BspT104I TTCGAA 1 cut(s) 494
BspT107I GGYRCC 1 cut(s) 235
BspTNI GGTCTC 1 cut(s) 94
BsrI ACTGG 2 cut(s) 408, 631
BssECI CCNNGG 3 cut(s) 104, 212, 536
BssMI GATC 2 cut(s) 9, 614
BssT1I CCWWGG 2 cut(s) 212, 536
Bst4CI ACNGT 3 cut(s) 36, 385, 566
BstAPI GCANNNNNTGC 1 cut(s) 647
BstBI TTCGAA 1 cut(s) 494
BstC8I GCNNGC 1 cut(s) 90
BstDEI CTNAG 4 cut(s) 78, 113, 223, 610
BstF5I GGATG 3 cut(s) 268, 489, 505
BstH2I RGCGCY 1 cut(s) 331
BstHHI GCGC 1 cut(s) 330
BstKTI GATC 2 cut(s) 12, 617
BstMAI GTCTC 2 cut(s) 94, 407
BstMBI GATC 2 cut(s) 9, 614
BstMWI GCNNNNNNNGC 3 cut(s) 352, 604, 647
BstPAI GACNNNNGTC 1 cut(s) 106
BstSFI CTRYAG 2 cut(s) 417, 636
BstV1I GCAGC 2 cut(s) 53, 449
BstX2I RGATCY 1 cut(s) 614
BstYI RGATCY 1 cut(s) 614
Bsu15I ATCGAT 1 cut(s) 12
Bsu36I CCTNAGG 1 cut(s) 610
BsuTUI ATCGAT 1 cut(s) 12
BtsCI GGATG 3 cut(s) 268, 489, 505
BtsI GCAGTG 2 cut(s) 99, 287
BtsIMutI CAGTG 3 cut(s) 99, 287, 571
Cac8I GCNNGC 1 cut(s) 90
CaiI CAGNNNCTG 1 cut(s) 77
CfoI GCGC 1 cut(s) 330
ClaI ATCGAT 1 cut(s) 12
CviAII CATG 1 cut(s) 337
DdeI CTNAG 4 cut(s) 78, 113, 223, 610
DpnI GATC 2 cut(s) 11, 616
DpnII GATC 2 cut(s) 9, 614
DraIII CACNNNGTG 1 cut(s) 116
DriI GACNNNNNGTC 1 cut(s) 129
Eam1105I GACNNNNNGTC 1 cut(s) 129
Eco130I CCWWGG 2 cut(s) 212, 536
Eco31I GGTCTC 1 cut(s) 94
Eco57I CTGAAG 1 cut(s) 396
Eco81I CCTNAGG 1 cut(s) 610
EcoT14I CCWWGG 2 cut(s) 212, 536
ErhI CCWWGG 2 cut(s) 212, 536
FaeI CATG 1 cut(s) 340
FaiI YATR 6 cut(s) 338, 363, 464, 481, 519, 602
FaqI GGGAC 2 cut(s) 117, 539
FatI CATG 1 cut(s) 336
Fnu4HI GCNGC 2 cut(s) 42, 438
FokI GGATG 3 cut(s) 275, 492, 496
Fsp4HI GCNGC 2 cut(s) 42, 438
FspBI CTAG 4 cut(s) 213, 243, 321, 560
GlaI GCGC 1 cut(s) 329
GluI GCNGC 2 cut(s) 42, 438
GsuI CTGGAG 1 cut(s) 168
HaeII RGCGCY 1 cut(s) 331
HhaI GCGC 1 cut(s) 330
Hin1II CATG 1 cut(s) 340
Hin6I GCGC 1 cut(s) 328
HinP1I GCGC 1 cut(s) 328
HinfI GANTC 3 cut(s) 119, 487, 556
HphI GGTGA 1 cut(s) 632
Hpy188I TCNGA 3 cut(s) 51, 202, 226
Hpy188III TCNNGA 6 cut(s) 147, 299, 321, 374, 452, 560
HpyAV CCTTC 2 cut(s) 163, 490
HpyCH4III ACNGT 3 cut(s) 36, 385, 566
HpyCH4IV ACGT 1 cut(s) 247
HpyCH4V TGCA 4 cut(s) 88, 280, 361, 419
HpyF10VI GCNNNNNNNGC 3 cut(s) 352, 604, 647
HpyF3I CTNAG 4 cut(s) 78, 113, 223, 610
HpySE526I ACGT 1 cut(s) 247
Hsp92II CATG 1 cut(s) 340
HspAI GCGC 1 cut(s) 328
Kzo9I GATC 2 cut(s) 9, 614
LmnI GCTCC 1 cut(s) 4
LpnPI CCDG 9 cut(s) 74, 132, 312, 387, 389, 465, 483, 603, 612
Lsp1109I GCAGC 2 cut(s) 53, 449
LweI GCATC 2 cut(s) 253, 445
MaeI CTAG 4 cut(s) 213, 243, 321, 560
MaeII ACGT 1 cut(s) 247
MaeIII GTNAC 4 cut(s) 73, 108, 248, 379
MalI GATC 2 cut(s) 11, 616
MboI GATC 2 cut(s) 9, 614
MboII GAAGA 1 cut(s) 485
MflI RGATCY 1 cut(s) 614
MluCI AATT 2 cut(s) 29, 174
MnlI CCTC 7 cut(s) 90, 99, 143, 183, 366, 427, 525
MseI TTAA 3 cut(s) 423, 594, 658
MwoI GCNNNNNNNGC 3 cut(s) 352, 604, 647
NdeII GATC 2 cut(s) 9, 614
NlaIII CATG 1 cut(s) 340
NlaIV GGNNCC 1 cut(s) 237
NmuCI GTSAC 1 cut(s) 108
NspV TTCGAA 1 cut(s) 494
PfeI GAWTC 3 cut(s) 119, 487, 556
PkrI GCNGC 2 cut(s) 43, 439
PshAI GACNNNNGTC 1 cut(s) 106
PspN4I GGNNCC 1 cut(s) 237
PstI CTGCAG 1 cut(s) 421
PstNI CAGNNNCTG 1 cut(s) 77
PsuI RGATCY 1 cut(s) 614
SaqAI TTAA 3 cut(s) 423, 594, 658
SatI GCNGC 2 cut(s) 42, 438
Sau3AI GATC 2 cut(s) 9, 614
SfaNI GCATC 2 cut(s) 253, 445
SfcI CTRYAG 2 cut(s) 417, 636
SfuI TTCGAA 1 cut(s) 494
Sse9I AATT 2 cut(s) 29, 174
SsiI CCGC 1 cut(s) 156
SspI AATATT 1 cut(s) 645
SspMI CTAG 4 cut(s) 213, 243, 321, 560
StyI CCWWGG 2 cut(s) 212, 536
TaaI ACNGT 3 cut(s) 36, 385, 566
TaiI ACGT 1 cut(s) 250
TaqI TCGA 3 cut(s) 12, 122, 494
TaqII GACCGA 1 cut(s) 118
TasI AATT 2 cut(s) 29, 174
TfiI GAWTC 3 cut(s) 119, 487, 556
Tru1I TTAA 3 cut(s) 423, 594, 658
Tru9I TTAA 3 cut(s) 423, 594, 658
TscAI CASTG 3 cut(s) 99, 287, 571
TseFI GTSAC 1 cut(s) 108
TseI GCWGC 2 cut(s) 41, 437
Tsp45I GTSAC 1 cut(s) 108
TspDTI ATGAA 4 cut(s) 325, 479, 494, 500
TspRI CASTG 3 cut(s) 99, 287, 571
XbaI TCTAGA 2 cut(s) 320, 559
XcmI CCANNNNNNNNNTGG 1 cut(s) 477
XmaJI CCTAGG 1 cut(s) 212
XspI CTAG 4 cut(s) 213, 243, 321, 560
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.