Rorug05G0582300

PAS fold

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0008833
Physical Location & Seq
Reverse (-)
77942636 .. 77942905
270 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0582300.1

Sequence Viewer

Length: 270 bp
ATGGGAAGAGGCACTGAGTTTGGGTCTTCTTCGAGGGCGGTGATTCAGCGTCCTGATGCTGATGGGTTGCTTCGGCGGTGGATGGTGACTCTGTGTGCGAATCCTCGGTCCTGGTTGCAATGGATTCTGCGTCGAGATCTTTGGAGCCAGAGGGTTGGAGCGCTTGGGTCAACAGATTGCTATGGGATTCTCATTCTAGTGTCGGCCTGGCCTTGGCGGAGATGCAGCGTTGCAGTTCAGTGGGGTGGCGTTGCAGATCTAGAAGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0007623 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009628 GO:0009637 GO:0009638 GO:0009657 GO:0009658 GO:0009785 GO:0009881 GO:0009882 GO:0009898 GO:0009902 GO:0009903 GO:0009904 GO:0009986 GO:0009987 GO:0010119 GO:0010155 GO:0010181 GO:0010359 GO:0010360 GO:0010361 GO:0010362 GO:0016020 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019750 GO:0022898 GO:0023052 GO:0030522 GO:0032409 GO:0032410 GO:0032412 GO:0032413 GO:0032553 GO:0032879 GO:0034762 GO:0034763 GO:0034765 GO:0034766 GO:0035556 GO:0036094 GO:0036211 GO:0038023 GO:0042802 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0043271 GO:0043412 GO:0044070 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046777 GO:0048037 GO:0048511 GO:0048519 GO:0050662 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051051 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051644 GO:0051649 GO:0051656 GO:0051667 GO:0051716 GO:0060089 GO:0065007 GO:0065009 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0097367 GO:0098552 GO:0098562 GO:0104004 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1903792 GO:1903959 GO:1903960 GO:1904062
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAS_9 Pkinase

Protein Analysis

89

Amino Acids

10.02

Weight (kDa)

9.77

Isoelectric Point (pI)

64.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 38, 76, 217
AfeI AGCGCT 1 cut(s) 162
AfiI CCNNNNNNNGG 1 cut(s) 213
AjnI CCWGG 2 cut(s) 110, 206
Aor51HI AGCGCT 1 cut(s) 162
AoxI GGCC 2 cut(s) 204, 209
ApeKI GCWGC 1 cut(s) 225
ArsI GACNNNNNNTTYG 2 cut(s) 92, 124
AspLEI GCGC 1 cut(s) 163
AspS9I GGNCC 1 cut(s) 108
AsuHPI GGTGA 2 cut(s) 52, 97
AvaII GGWCC 1 cut(s) 108
BbsI GAAGAC 1 cut(s) 18
BbvI GCAGC 1 cut(s) 237
BccI CCATC 2 cut(s) 56, 76
BciT130I CCWGG 2 cut(s) 112, 208
BfaI CTAG 2 cut(s) 197, 260
BfoI RGCGCY 1 cut(s) 164
BglII AGATCT 2 cut(s) 136, 256
BisI GCNGC 1 cut(s) 226
BlsI GCNGC 1 cut(s) 227
Bme1390I CCNGG 2 cut(s) 112, 208
Bme18I GGWCC 1 cut(s) 108
BmgT120I GGNCC 1 cut(s) 108
BmiI GGNNCC 1 cut(s) 146
BmrFI CCNGG 2 cut(s) 112, 208
BmsI GCATC 2 cut(s) 46, 212
BpiI GAAGAC 1 cut(s) 18
BsaJI CCNNGG 2 cut(s) 104, 212
Bsc4I CCNNNNNNNGG 1 cut(s) 213
Bse3DI GCAATG 1 cut(s) 125
BseBI CCWGG 2 cut(s) 112, 208
BseDI CCNNGG 2 cut(s) 104, 212
BseGI GGATG 1 cut(s) 87
BseLI CCNNNNNNNGG 1 cut(s) 213
BseMI GCAATG 1 cut(s) 125
BseMII CTCAG 1 cut(s) 6
BseXI GCAGC 1 cut(s) 237
BshFI GGCC 2 cut(s) 206, 211
BslI CCNNNNNNNGG 1 cut(s) 213
BsnI GGCC 2 cut(s) 206, 211
Bsp143I GATC 2 cut(s) 136, 256
BspACI CCGC 3 cut(s) 38, 76, 217
BspANI GGCC 2 cut(s) 206, 211
BspCNI CTCAG 1 cut(s) 7
BspLI GGNNCC 1 cut(s) 146
BsrDI GCAATG 1 cut(s) 125
BssECI CCNNGG 2 cut(s) 104, 212
BssMI GATC 2 cut(s) 136, 256
BssT1I CCWWGG 1 cut(s) 212
Bst2UI CCWGG 2 cut(s) 112, 208
BstDEI CTNAG 1 cut(s) 15
BstF5I GGATG 1 cut(s) 87
BstH2I RGCGCY 1 cut(s) 164
BstHHI GCGC 1 cut(s) 163
BstKTI GATC 2 cut(s) 139, 259
BstMBI GATC 2 cut(s) 136, 256
BstNI CCWGG 2 cut(s) 112, 208
BstSCI CCNGG 2 cut(s) 110, 206
BstV1I GCAGC 1 cut(s) 237
BstV2I GAAGAC 1 cut(s) 18
BstX2I RGATCY 2 cut(s) 136, 256
BstXI CCANNNNNNTGG 1 cut(s) 155
BstYI RGATCY 2 cut(s) 136, 256
BsuRI GGCC 2 cut(s) 206, 211
BtsCI GGATG 1 cut(s) 87
BtsIMutI CAGTG 2 cut(s) 12, 245
CfoI GCGC 1 cut(s) 163
Cfr13I GGNCC 1 cut(s) 108
CseI GACGC 2 cut(s) 38, 119
CviJI RGCY 3 cut(s) 147, 206, 211
CviKI_1 RGCY 3 cut(s) 147, 206, 211
DdeI CTNAG 1 cut(s) 15
DpnI GATC 2 cut(s) 138, 258
DpnII GATC 2 cut(s) 136, 256
EciI GGCGGA 1 cut(s) 232
Eco130I CCWWGG 1 cut(s) 212
Eco47I GGWCC 1 cut(s) 108
Eco47III AGCGCT 1 cut(s) 162
EcoRII CCWGG 2 cut(s) 110, 206
EcoT14I CCWWGG 1 cut(s) 212
ErhI CCWWGG 1 cut(s) 212
FaiI YATR 1 cut(s) 183
Fnu4HI GCNGC 1 cut(s) 226
FokI GGATG 1 cut(s) 94
Fsp4HI GCNGC 1 cut(s) 226
FspBI CTAG 2 cut(s) 197, 260
GlaI GCGC 1 cut(s) 162
GluI GCNGC 1 cut(s) 226
HaeII RGCGCY 1 cut(s) 164
HaeIII GGCC 2 cut(s) 206, 211
HgaI GACGC 2 cut(s) 38, 119
HhaI GCGC 1 cut(s) 163
Hin6I GCGC 1 cut(s) 161
HinP1I GCGC 1 cut(s) 161
HincII GTYRAC 1 cut(s) 171
HindII GTYRAC 1 cut(s) 171
HinfI GANTC 5 cut(s) 43, 88, 100, 124, 187
HphI GGTGA 2 cut(s) 52, 97
Hpy166II GTNNAC 1 cut(s) 171
Hpy188III TCNNGA 3 cut(s) 53, 134, 260
Hpy8I GTNNAC 1 cut(s) 171
Hpy99I CGWCG 1 cut(s) 135
HpyAV CCTTC 1 cut(s) 257
HpyCH4V TGCA 4 cut(s) 118, 225, 233, 254
HpyF3I CTNAG 1 cut(s) 15
HspAI GCGC 1 cut(s) 161
Kzo9I GATC 2 cut(s) 136, 256
LmnI GCTCC 2 cut(s) 144, 158
LpnPI CCDG 6 cut(s) 66, 97, 124, 161, 193, 220
Lsp1109I GCAGC 1 cut(s) 237
LweI GCATC 2 cut(s) 46, 212
MaeI CTAG 2 cut(s) 197, 260
MaeIII GTNAC 1 cut(s) 85
MalI GATC 2 cut(s) 138, 258
MboI GATC 2 cut(s) 136, 256
MboII GAAGA 3 cut(s) 18, 18, 21
MflI RGATCY 2 cut(s) 136, 256
MlyI GAGTC 1 cut(s) 82
MmeI TCCRAC 1 cut(s) 136
MnlI CCTC 3 cut(s) 27, 114, 144
MslI CAYNNNNRTG 1 cut(s) 197
MspR9I CCNGG 2 cut(s) 112, 208
MvaI CCWGG 2 cut(s) 112, 208
NdeII GATC 2 cut(s) 136, 256
NlaIV GGNNCC 1 cut(s) 146
NmuCI GTSAC 1 cut(s) 85
PfeI GAWTC 4 cut(s) 43, 100, 124, 187
PkrI GCNGC 1 cut(s) 227
PleI GAGTC 1 cut(s) 82
PpsI GAGTC 1 cut(s) 82
Psp6I CCWGG 2 cut(s) 110, 206
PspGI CCWGG 2 cut(s) 110, 206
PspN4I GGNNCC 1 cut(s) 146
PspPI GGNCC 1 cut(s) 108
PsuI RGATCY 2 cut(s) 136, 256
RseI CAYNNNNRTG 1 cut(s) 197
SatI GCNGC 1 cut(s) 226
Sau3AI GATC 2 cut(s) 136, 256
Sau96I GGNCC 1 cut(s) 108
SchI GAGTC 1 cut(s) 82
ScrFI CCNGG 2 cut(s) 112, 208
SfaNI GCATC 2 cut(s) 46, 212
SinI GGWCC 1 cut(s) 108
SmiMI CAYNNNNRTG 1 cut(s) 197
SsiI CCGC 3 cut(s) 38, 76, 217
SspMI CTAG 2 cut(s) 197, 260
StyD4I CCNGG 2 cut(s) 110, 206
StyI CCWWGG 1 cut(s) 212
TaqI TCGA 2 cut(s) 32, 133
TaqII GACCGA 1 cut(s) 96
TfiI GAWTC 4 cut(s) 43, 100, 124, 187
TscAI CASTG 2 cut(s) 19, 245
TseFI GTSAC 1 cut(s) 85
TseI GCWGC 1 cut(s) 225
Tsp45I GTSAC 1 cut(s) 85
TspRI CASTG 2 cut(s) 19, 245
VpaK11BI GGWCC 1 cut(s) 108
XbaI TCTAGA 1 cut(s) 259
XspI CTAG 2 cut(s) 197, 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.