PAS fold
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_1g27651 |
| rosa_chinensis | RchiOBHm_Chr1g0330501 RchiOBHm_Chr1g0341541 RchiOBHm_Chr3g0493181 RchiOBHm_Chr5g0068631 RchiOBHm_Chr7g0200611 RchiOBHm_Chr7g0235681 RchiOBHm_Chr7g0242661 |
| rosa_multiflora | Rmu_sc0002539.1_g000024 |
| rosa_roxburghii | Rroxscaffold_1G00071600 Rroxscaffold_3G00223660 Rroxscaffold_5G00346520 Rroxscaffold_5G00366050 |
| rosa_rugosa | Rorug05G0582300 |
| rosa_samantha | Rh3AG308700 Rh4BG032100 Rh5AG071000 Rh5AG405200 Rh5CG079900 Rh7AG127500 Rh7CG198000 |
| rosa_wichuraiana | Rw1G003250 Rw5G028180 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 2 cut(s) | 957, 1081 |
| AccIII | TCCGGA | 1 cut(s) | 919 |
| AciI | CCGC | 1 cut(s) | 473 |
| AclWI | GGATC | 6 cut(s) | 361, 507, 1068, 1127, 1289, 1302 |
| AcoI | YGGCCR | 1 cut(s) | 940 |
| AcsI | RAATTY | 2 cut(s) | 886, 1067 |
| AcuI | CTGAAG | 5 cut(s) | 135, 644, 716, 924, 1287 |
| AfaI | GTAC | 4 cut(s) | 48, 66, 407, 911 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 598, 1016, 1256 |
| AflIII | ACRYGT | 2 cut(s) | 492, 547 |
| AgsI | TTSAA | 3 cut(s) | 290, 325, 712 |
| AjnI | CCWGG | 2 cut(s) | 574, 1072 |
| AluBI | AGCT | 6 cut(s) | 284, 467, 799, 938, 1271, 1288 |
| AluI | AGCT | 6 cut(s) | 284, 467, 799, 938, 1271, 1288 |
| Alw21I | GWGCWC | 1 cut(s) | 462 |
| Alw26I | GTCTC | 3 cut(s) | 146, 1097, 1158 |
| Alw44I | GTGCAC | 1 cut(s) | 458 |
| AlwI | GGATC | 6 cut(s) | 361, 507, 1068, 1127, 1289, 1302 |
| Aor13HI | TCCGGA | 1 cut(s) | 919 |
| AoxI | GGCC | 2 cut(s) | 344, 940 |
| ApaLI | GTGCAC | 1 cut(s) | 458 |
| ApeKI | GCWGC | 2 cut(s) | 176, 1221 |
| ApoI | RAATTY | 2 cut(s) | 886, 1067 |
| AspS9I | GGNCC | 3 cut(s) | 345, 382, 619 |
| AsuHPI | GGTGA | 3 cut(s) | 371, 494, 1175 |
| AsuII | TTCGAA | 1 cut(s) | 233 |
| AvaII | GGWCC | 2 cut(s) | 382, 619 |
| BaeGI | GKGCMC | 2 cut(s) | 462, 747 |
| BalI | TGGCCA | 1 cut(s) | 942 |
| BamHI | GGATCC | 1 cut(s) | 1294 |
| BanII | GRGCYC | 2 cut(s) | 970, 1213 |
| Bbv12I | GWGCWC | 1 cut(s) | 462 |
| BbvI | GCAGC | 2 cut(s) | 188, 1208 |
| BccI | CCATC | 1 cut(s) | 68 |
| BciT130I | CCWGG | 2 cut(s) | 576, 1074 |
| BclI | TGATCA | 2 cut(s) | 400, 558 |
| BcoDI | GTCTC | 3 cut(s) | 146, 1097, 1158 |
| BfaI | CTAG | 4 cut(s) | 299, 948, 1089, 1214 |
| BfmI | CTRYAG | 1 cut(s) | 156 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 343, 419 |
| BglII | AGATCT | 1 cut(s) | 1309 |
| BisI | GCNGC | 2 cut(s) | 177, 1222 |
| BlpI | GCTNAGC | 1 cut(s) | 1284 |
| BlsI | GCNGC | 2 cut(s) | 178, 1223 |
| BmcAI | AGTACT | 1 cut(s) | 407 |
| Bme1390I | CCNGG | 2 cut(s) | 576, 1074 |
| Bme18I | GGWCC | 2 cut(s) | 382, 619 |
| BmgT120I | GGNCC | 3 cut(s) | 345, 382, 619 |
| BmiI | GGNNCC | 1 cut(s) | 1296 |
| BmrFI | CCNGG | 2 cut(s) | 576, 1074 |
| BmrI | ACTGGG | 1 cut(s) | 1216 |
| BmsI | GCATC | 6 cut(s) | 184, 841, 890, 1135, 1234, 1293 |
| BmuI | ACTGGG | 1 cut(s) | 1216 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 471, 503 |
| BpmI | CTGGAG | 1 cut(s) | 954 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1284 |
| Bpu14I | TTCGAA | 1 cut(s) | 233 |
| BsaAI | YACGTR | 1 cut(s) | 748 |
| BsaI | GGTCTC | 1 cut(s) | 1158 |
| BsaJI | CCNNGG | 4 cut(s) | 275, 348, 574, 669 |
| BsaWI | WCCGGW | 1 cut(s) | 919 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 598, 1016, 1256 |
| Bse118I | RCCGGY | 1 cut(s) | 1084 |
| Bse1I | ACTGG | 5 cut(s) | 147, 370, 937, 965, 1211 |
| BseAI | TCCGGA | 1 cut(s) | 919 |
| BseBI | CCWGG | 2 cut(s) | 576, 1074 |
| BseDI | CCNNGG | 4 cut(s) | 275, 348, 574, 669 |
| BseGI | GGATG | 2 cut(s) | 228, 244 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 598, 1016, 1256 |
| BseMII | CTCAG | 2 cut(s) | 1169, 1290 |
| BseNI | ACTGG | 5 cut(s) | 147, 370, 937, 965, 1211 |
| BseRI | GAGGAG | 2 cut(s) | 1224, 1239 |
| BseSI | GKGCMC | 2 cut(s) | 462, 747 |
| BseXI | GCAGC | 2 cut(s) | 188, 1208 |
| BsgI | GTGCAG | 1 cut(s) | 972 |
| BshFI | GGCC | 2 cut(s) | 346, 942 |
| BsiHKAI | GWGCWC | 1 cut(s) | 462 |
| BsiSI | CCGG | 2 cut(s) | 920, 1085 |
| BslFI | GGGAC | 2 cut(s) | 278, 1273 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 598, 1016, 1256 |
| BsmAI | GTCTC | 3 cut(s) | 146, 1097, 1158 |
| BsmFI | GGGAC | 2 cut(s) | 278, 1273 |
| BsnI | GGCC | 2 cut(s) | 346, 942 |
| Bso31I | GGTCTC | 1 cut(s) | 1158 |
| Bsp119I | TTCGAA | 1 cut(s) | 233 |
| Bsp1286I | GDGCHC | 4 cut(s) | 462, 747, 970, 1213 |
| Bsp13I | TCCGGA | 1 cut(s) | 919 |
| Bsp143I | GATC | 8 cut(s) | 353, 400, 499, 558, 1060, 1132, 1294, 1309 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1284 |
| BspACI | CCGC | 1 cut(s) | 473 |
| BspANI | GGCC | 2 cut(s) | 346, 942 |
| BspCNI | CTCAG | 2 cut(s) | 1168, 1291 |
| BspEI | TCCGGA | 1 cut(s) | 919 |
| BspLI | GGNNCC | 1 cut(s) | 1296 |
| BspMAI | CTGCAG | 1 cut(s) | 160 |
| BspPI | GGATC | 6 cut(s) | 361, 507, 1068, 1127, 1289, 1302 |
| BspT104I | TTCGAA | 1 cut(s) | 233 |
| BspTNI | GGTCTC | 1 cut(s) | 1158 |
| BsrFI | RCCGGY | 1 cut(s) | 1084 |
| BsrI | ACTGG | 5 cut(s) | 147, 370, 937, 965, 1211 |
| BssAI | RCCGGY | 1 cut(s) | 1084 |
| BssECI | CCNNGG | 4 cut(s) | 275, 348, 574, 669 |
| BssMI | GATC | 8 cut(s) | 353, 400, 499, 558, 1060, 1132, 1294, 1309 |
| BssNAI | GTATAC | 1 cut(s) | 1082 |
| BssT1I | CCWWGG | 3 cut(s) | 275, 348, 669 |
| Bst1107I | GTATAC | 1 cut(s) | 1082 |
| Bst2UI | CCWGG | 2 cut(s) | 576, 1074 |
| Bst4CI | ACNGT | 4 cut(s) | 51, 305, 686, 1107 |
| Bst6I | CTCTTC | 3 cut(s) | 593, 900, 1259 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 524 |
| BstBAI | YACGTR | 1 cut(s) | 748 |
| BstBI | TTCGAA | 1 cut(s) | 233 |
| BstC8I | GCNNGC | 2 cut(s) | 940, 1168 |
| BstDEI | CTNAG | 3 cut(s) | 1155, 1284, 1299 |
| BstF5I | GGATG | 2 cut(s) | 228, 244 |
| BstKTI | GATC | 8 cut(s) | 356, 403, 502, 561, 1063, 1135, 1297, 1312 |
| BstMAI | GTCTC | 3 cut(s) | 146, 1097, 1158 |
| BstMBI | GATC | 8 cut(s) | 353, 400, 499, 558, 1060, 1132, 1294, 1309 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 91, 343, 419, 524 |
| BstNI | CCWGG | 2 cut(s) | 576, 1074 |
| BstNSI | RCATGY | 2 cut(s) | 496, 551 |
| BstSCI | CCNGG | 2 cut(s) | 574, 1072 |
| BstSFI | CTRYAG | 1 cut(s) | 156 |
| BstSLI | GKGCMC | 2 cut(s) | 462, 747 |
| BstV1I | GCAGC | 2 cut(s) | 188, 1208 |
| BstX2I | RGATCY | 4 cut(s) | 353, 1060, 1294, 1309 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 392 |
| BstYI | RGATCY | 4 cut(s) | 353, 1060, 1294, 1309 |
| BstZ17I | GTATAC | 1 cut(s) | 1082 |
| BsuRI | GGCC | 2 cut(s) | 346, 942 |
| BtgZI | GCGATG | 1 cut(s) | 898 |
| BtsCI | GGATG | 2 cut(s) | 228, 244 |
| BtsI | GCAGTG | 2 cut(s) | 376, 745 |
| BtsIMutI | CAGTG | 7 cut(s) | 310, 376, 561, 642, 682, 745, 900 |
| Cac8I | GCNNGC | 2 cut(s) | 940, 1168 |
| Cfr10I | RCCGGY | 1 cut(s) | 1084 |
| Cfr13I | GGNCC | 3 cut(s) | 345, 382, 619 |
| CseI | GACGC | 1 cut(s) | 1169 |
| Csp6I | GTAC | 4 cut(s) | 47, 65, 406, 910 |
| CviAII | CATG | 6 cut(s) | 415, 439, 493, 548, 862, 1225 |
| CviQI | GTAC | 4 cut(s) | 47, 65, 406, 910 |
| DdeI | CTNAG | 3 cut(s) | 1155, 1284, 1299 |
| DpnI | GATC | 8 cut(s) | 355, 402, 501, 560, 1062, 1134, 1296, 1311 |
| DpnII | GATC | 8 cut(s) | 353, 400, 499, 558, 1060, 1132, 1294, 1309 |
| EaeI | YGGCCR | 1 cut(s) | 940 |
| Eam1104I | CTCTTC | 3 cut(s) | 593, 900, 1259 |
| EarI | CTCTTC | 3 cut(s) | 593, 900, 1259 |
| Eco130I | CCWWGG | 3 cut(s) | 275, 348, 669 |
| Eco24I | GRGCYC | 2 cut(s) | 970, 1213 |
| Eco31I | GGTCTC | 1 cut(s) | 1158 |
| Eco47I | GGWCC | 2 cut(s) | 382, 619 |
| Eco57I | CTGAAG | 5 cut(s) | 135, 644, 716, 924, 1287 |
| EcoO109I | RGGNCCY | 2 cut(s) | 345, 619 |
| EcoRII | CCWGG | 2 cut(s) | 574, 1072 |
| EcoT14I | CCWWGG | 3 cut(s) | 275, 348, 669 |
| EcoT38I | GRGCYC | 2 cut(s) | 970, 1213 |
| ErhI | CCWWGG | 3 cut(s) | 275, 348, 669 |
| FaeI | CATG | 6 cut(s) | 418, 442, 496, 551, 865, 1228 |
| FaqI | GGGAC | 2 cut(s) | 278, 1273 |
| FatI | CATG | 6 cut(s) | 414, 438, 492, 547, 861, 1224 |
| FbaI | TGATCA | 2 cut(s) | 400, 558 |
| FblI | GTMKAC | 2 cut(s) | 957, 1081 |
| Fnu4HI | GCNGC | 2 cut(s) | 177, 1222 |
| FokI | GGATG | 2 cut(s) | 231, 235 |
| FriOI | GRGCYC | 2 cut(s) | 970, 1213 |
| Fsp4HI | GCNGC | 2 cut(s) | 177, 1222 |
| FspBI | CTAG | 4 cut(s) | 299, 948, 1089, 1214 |
| GluI | GCNGC | 2 cut(s) | 177, 1222 |
| GsuI | CTGGAG | 1 cut(s) | 954 |
| HaeIII | GGCC | 2 cut(s) | 346, 942 |
| HapII | CCGG | 2 cut(s) | 920, 1085 |
| HgaI | GACGC | 1 cut(s) | 1169 |
| Hin1II | CATG | 6 cut(s) | 418, 442, 496, 551, 865, 1228 |
| HincII | GTYRAC | 2 cut(s) | 845, 1204 |
| HindII | GTYRAC | 2 cut(s) | 845, 1204 |
| HindIII | AAGCTT | 1 cut(s) | 1286 |
| HinfI | GANTC | 4 cut(s) | 226, 295, 632, 850 |
| HpaII | CCGG | 2 cut(s) | 920, 1085 |
| HphI | GGTGA | 3 cut(s) | 371, 494, 1175 |
| Hpy166II | GTNNAC | 6 cut(s) | 35, 460, 845, 958, 1082, 1204 |
| Hpy188I | TCNGA | 2 cut(s) | 537, 735 |
| Hpy188III | TCNNGA | 9 cut(s) | 113, 191, 299, 622, 920, 1130, 1157, 1258, 1298 |
| Hpy8I | GTNNAC | 6 cut(s) | 35, 460, 845, 958, 1082, 1204 |
| HpyAV | CCTTC | 6 cut(s) | 229, 255, 412, 610, 619, 1154 |
| HpyCH4III | ACNGT | 4 cut(s) | 51, 305, 686, 1107 |
| HpyCH4IV | ACGT | 2 cut(s) | 747, 1037 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 91, 343, 419, 524 |
| HpyF3I | CTNAG | 3 cut(s) | 1155, 1284, 1299 |
| HpySE526I | ACGT | 2 cut(s) | 747, 1037 |
| Hsp92II | CATG | 6 cut(s) | 418, 442, 496, 551, 865, 1228 |
| Kpn2I | TCCGGA | 1 cut(s) | 919 |
| Ksp22I | TGATCA | 2 cut(s) | 400, 558 |
| Kzo9I | GATC | 8 cut(s) | 353, 400, 499, 558, 1060, 1132, 1294, 1309 |
| LmnI | GCTCC | 3 cut(s) | 922, 935, 1252 |
| Lsp1109I | GCAGC | 2 cut(s) | 188, 1208 |
| LweI | GCATC | 6 cut(s) | 184, 841, 890, 1135, 1234, 1293 |
| MaeI | CTAG | 4 cut(s) | 299, 948, 1089, 1214 |
| MaeII | ACGT | 2 cut(s) | 747, 1037 |
| MaeIII | GTNAC | 3 cut(s) | 118, 748, 1181 |
| MalI | GATC | 8 cut(s) | 355, 402, 501, 560, 1062, 1134, 1296, 1311 |
| MboI | GATC | 8 cut(s) | 353, 400, 499, 558, 1060, 1132, 1294, 1309 |
| MboII | GAAGA | 9 cut(s) | 224, 503, 580, 641, 671, 850, 917, 1043, 1246 |
| MfeI | CAATTG | 1 cut(s) | 386 |
| MflI | RGATCY | 4 cut(s) | 353, 1060, 1294, 1309 |
| MhlI | GDGCHC | 4 cut(s) | 462, 747, 970, 1213 |
| MlsI | TGGCCA | 1 cut(s) | 942 |
| MluCI | AATT | 6 cut(s) | 386, 696, 804, 886, 1067, 1173 |
| MluNI | TGGCCA | 1 cut(s) | 942 |
| MmeI | TCCRAC | 1 cut(s) | 477 |
| MnlI | CCTC | 8 cut(s) | 105, 166, 264, 497, 649, 1242, 1245, 1260 |
| Mox20I | TGGCCA | 1 cut(s) | 942 |
| MroI | TCCGGA | 1 cut(s) | 919 |
| MscI | TGGCCA | 1 cut(s) | 942 |
| MseI | TTAA | 5 cut(s) | 162, 333, 803, 1109, 1176 |
| MslI | CAYNNNNRTG | 1 cut(s) | 948 |
| Msp20I | TGGCCA | 1 cut(s) | 942 |
| MspI | CCGG | 2 cut(s) | 920, 1085 |
| MspR9I | CCNGG | 2 cut(s) | 576, 1074 |
| MunI | CAATTG | 1 cut(s) | 386 |
| MvaI | CCWGG | 2 cut(s) | 576, 1074 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 91, 343, 419, 524 |
| NdeII | GATC | 8 cut(s) | 353, 400, 499, 558, 1060, 1132, 1294, 1309 |
| NlaIII | CATG | 6 cut(s) | 418, 442, 496, 551, 865, 1228 |
| NlaIV | GGNNCC | 1 cut(s) | 1296 |
| NmuCI | GTSAC | 1 cut(s) | 1181 |
| NspI | RCATGY | 2 cut(s) | 496, 551 |
| NspV | TTCGAA | 1 cut(s) | 233 |
| PciI | ACATGT | 2 cut(s) | 492, 547 |
| PfeI | GAWTC | 4 cut(s) | 226, 295, 632, 850 |
| PfoI | TCCNGGA | 1 cut(s) | 1072 |
| PkrI | GCNGC | 2 cut(s) | 178, 1223 |
| Ppu21I | YACGTR | 1 cut(s) | 748 |
| PpuMI | RGGWCCY | 1 cut(s) | 619 |
| PscI | ACATGT | 2 cut(s) | 492, 547 |
| Psp5II | RGGWCCY | 1 cut(s) | 619 |
| Psp6I | CCWGG | 2 cut(s) | 574, 1072 |
| PspGI | CCWGG | 2 cut(s) | 574, 1072 |
| PspN4I | GGNNCC | 1 cut(s) | 1296 |
| PspPI | GGNCC | 3 cut(s) | 345, 382, 619 |
| PspPPI | RGGWCCY | 1 cut(s) | 619 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 576, 608 |
| PstI | CTGCAG | 1 cut(s) | 160 |
| PsuI | RGATCY | 4 cut(s) | 353, 1060, 1294, 1309 |
| RsaI | GTAC | 4 cut(s) | 48, 66, 407, 911 |
| RsaNI | GTAC | 4 cut(s) | 47, 65, 406, 910 |
| RseI | CAYNNNNRTG | 1 cut(s) | 948 |
| SaqAI | TTAA | 5 cut(s) | 162, 333, 803, 1109, 1176 |
| SatI | GCNGC | 2 cut(s) | 177, 1222 |
| Sau3AI | GATC | 8 cut(s) | 353, 400, 499, 558, 1060, 1132, 1294, 1309 |
| Sau96I | GGNCC | 3 cut(s) | 345, 382, 619 |
| ScaI | AGTACT | 1 cut(s) | 407 |
| ScrFI | CCNGG | 2 cut(s) | 576, 1074 |
| SduI | GDGCHC | 4 cut(s) | 462, 747, 970, 1213 |
| SfaNI | GCATC | 6 cut(s) | 184, 841, 890, 1135, 1234, 1293 |
| SfcI | CTRYAG | 1 cut(s) | 156 |
| SfuI | TTCGAA | 1 cut(s) | 233 |
| SinI | GGWCC | 2 cut(s) | 382, 619 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 948 |
| Sse9I | AATT | 6 cut(s) | 386, 696, 804, 886, 1067, 1173 |
| SsiI | CCGC | 1 cut(s) | 473 |
| SspI | AATATT | 2 cut(s) | 1048, 1324 |
| SspMI | CTAG | 4 cut(s) | 299, 948, 1089, 1214 |
| StyD4I | CCNGG | 2 cut(s) | 574, 1072 |
| StyI | CCWWGG | 3 cut(s) | 275, 348, 669 |
| TaaI | ACNGT | 4 cut(s) | 51, 305, 686, 1107 |
| TaiI | ACGT | 2 cut(s) | 750, 1040 |
| TaqI | TCGA | 3 cut(s) | 233, 489, 1242 |
| TaqII | GACCGA | 1 cut(s) | 773 |
| TasI | AATT | 6 cut(s) | 386, 696, 804, 886, 1067, 1173 |
| TatI | WGTACW | 4 cut(s) | 46, 64, 405, 909 |
| TfiI | GAWTC | 4 cut(s) | 226, 295, 632, 850 |
| Tru1I | TTAA | 5 cut(s) | 162, 333, 803, 1109, 1176 |
| Tru9I | TTAA | 5 cut(s) | 162, 333, 803, 1109, 1176 |
| TscAI | CASTG | 7 cut(s) | 310, 376, 568, 642, 689, 745, 907 |
| TseFI | GTSAC | 1 cut(s) | 1181 |
| TseI | GCWGC | 2 cut(s) | 176, 1221 |
| Tsp45I | GTSAC | 1 cut(s) | 1181 |
| TspDTI | ATGAA | 7 cut(s) | 218, 233, 239, 431, 850, 1002, 1241 |
| TspRI | CASTG | 7 cut(s) | 310, 376, 568, 642, 689, 745, 907 |
| VneI | GTGCAC | 1 cut(s) | 458 |
| VpaK11BI | GGWCC | 2 cut(s) | 382, 619 |
| XapI | RAATTY | 2 cut(s) | 886, 1067 |
| XbaI | TCTAGA | 1 cut(s) | 298 |
| XceI | RCATGY | 2 cut(s) | 496, 551 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 216, 421, 1144 |
| XmiI | GTMKAC | 2 cut(s) | 957, 1081 |
| XspI | CTAG | 4 cut(s) | 299, 948, 1089, 1214 |
| ZrmI | AGTACT | 1 cut(s) | 407 |