Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002539.1

Orthogroup ID

OG0008833

Physical Location & Seq

Genomic Coordinates Forward (+)

71590 .. 76110

Gene Structure 4521 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002539.1_g000024.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

atgcatcacttcccttacaactcttacaggacactgactttgctatgtcttgaacacagaaaccctaaagcgacaatcctcccaacagttgacattcacaggtatagacctgcaccaacagtcgcgtatttttcatcgagaggtcctgcacagcttaccgaaaatgttctcaagcctgacataatggctccgggagtggcaattttagctgccatcagtcccgacaataaatcagggagtatcccccatggagaaaagccatccaagttttccataaagtctggaacatcaatggcttgcccacatgtaacaggcgctgctgcattcatcaagtcagtgcatcgtggatggacatcttccatgatcaaatcagcacttatgacaacagcaaccatgtacaacaacatgaaaaagcctttgataaacagcactaacaactatgcaaatccacatgaggatggatatgtcaaagagactgcagttaatgttgatgaggcagcaagagaacttccagatgccaatatgaaaccagaagatttatggatgaatcattcgaaggtcgttcatccaaagcctcatagacgggacagccccccttggagagctattcaaaagattctagacagtggagaacagataggattgaagcattttaagcctataaagcccttgggatatggatatgtacttttggaaatcccgagggtcaatatgctgagcccgggaccgagcccaaagttttcgggtcggtctcagatgaagttttccggcagtcgggaccggagagagcctggaccgatgttttccaggctgggtttctcgggttttcgggacttttgcaccatctcaagatttgaaaaatctggtgaagatccaccaccgatcaggttagaaacagataaaccgattaaggaacttgaagaatttgaggagatcgaggaatttgacgaagaaatccggccaaaaacacattcgtcggggtttagatggaggaatttgaggaggtcgactggttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9 PA Peptidase_S8

Protein Analysis

338

Amino Acids

38.12

Weight (kDa)

9.48

Isoelectric Point (pI)

47.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008833)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g27651
rosa_chinensis	RchiOBHm_Chr1g0330501 RchiOBHm_Chr1g0341541 RchiOBHm_Chr3g0493181 RchiOBHm_Chr5g0068631 RchiOBHm_Chr7g0200611 RchiOBHm_Chr7g0235681 RchiOBHm_Chr7g0242661
rosa_multiflora	Rmu_sc0002539.1_g000024
rosa_roxburghii	Rroxscaffold_1G00071600 Rroxscaffold_3G00223660 Rroxscaffold_5G00346520 Rroxscaffold_5G00366050
rosa_rugosa	Rorug05G0582300
rosa_samantha	Rh3AG308700 Rh4BG032100 Rh5AG071000 Rh5AG405200 Rh5CG079900 Rh7AG127500 Rh7CG198000
rosa_wichuraiana	Rw1G003250 Rw5G028180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	118
AccI	GTMKAC	1 cut(s)	1007
AccII	CGCG	1 cut(s)	125
AclWI	GGATC	1 cut(s)	866
AcoI	YGGCCR	1 cut(s)	959
AcsI	RAATTY	3 cut(s)	923, 941, 994
AfaI	GTAC	2 cut(s)	398, 687
AfiI	CCNNNNNNNGG	1 cut(s)	774
AflIII	ACRYGT	1 cut(s)	304
AgsI	TTSAA	5 cut(s)	53, 611, 646, 857, 920
AjnI	CCWGG	2 cut(s)	790, 806
AjuI	GAANNNNNNNTTGG	2 cut(s)	955, 987
AluBI	AGCT	3 cut(s)	154, 209, 605
AluI	AGCT	3 cut(s)	154, 209, 605
Alw26I	GTCTC	2 cut(s)	467, 756
AlwI	GGATC	1 cut(s)	866
AlwNI	CAGNNNCTG	1 cut(s)	317
Ama87I	CYCGRG	3 cut(s)	700, 721, 820
AoxI	GGCC	1 cut(s)	959
ApeKI	GCWGC	4 cut(s)	209, 317, 320, 497
ApoI	RAATTY	3 cut(s)	923, 941, 994
ArsI	GACNNNNNNTTYG	2 cut(s)	22, 54
Asp700I	GAANNNNTTC	1 cut(s)	165
AspLEI	GCGC	1 cut(s)	317
AspS9I	GGNCC	4 cut(s)	143, 725, 778, 794
AsuC2I	CCSGG	3 cut(s)	192, 722, 723
AsuHPI	GGTGA	1 cut(s)	878
AsuII	TTCGAA	1 cut(s)	554
AvaI	CYCGRG	3 cut(s)	700, 721, 820
AvaII	GGWCC	4 cut(s)	143, 725, 778, 794
BanII	GRGCYC	2 cut(s)	722, 734
BbvI	GCAGC	4 cut(s)	196, 304, 307, 509
BccI	CCATC	6 cut(s)	221, 268, 342, 452, 851, 981
BciT130I	CCWGG	2 cut(s)	792, 808
BciVI	GTATCC	1 cut(s)	251
BclI	TGATCA	1 cut(s)	363
BcnI	CCSGG	3 cut(s)	192, 722, 723
BcoDI	GTCTC	2 cut(s)	467, 756
BfaI	CTAG	1 cut(s)	620
BfmI	CTRYAG	1 cut(s)	477
BfoI	RGCGCY	1 cut(s)	318
BfuAI	ACCTGC	1 cut(s)	118
BfuI	GTATCC	1 cut(s)	251
BisI	GCNGC	4 cut(s)	210, 318, 321, 498
BlpI	GCTNAGC	1 cut(s)	716
BlsI	GCNGC	4 cut(s)	211, 319, 322, 499
Bme1390I	CCNGG	5 cut(s)	192, 722, 723, 792, 808
Bme18I	GGWCC	4 cut(s)	143, 725, 778, 794
BmeT110I	CYCGRG	3 cut(s)	700, 721, 820
BmgT120I	GGNCC	4 cut(s)	143, 725, 778, 794
BmiI	GGNNCC	3 cut(s)	189, 726, 779
BmrFI	CCNGG	5 cut(s)	192, 722, 723, 792, 808
BmsI	GCATC	3 cut(s)	13, 349, 505
Bpu1102I	GCTNAGC	1 cut(s)	716
Bpu14I	TTCGAA	1 cut(s)	554
BpuEI	CTTGAG	2 cut(s)	155, 832
BpuMI	CCSGG	3 cut(s)	192, 722, 723
BsaBI	GATNNNNATC	1 cut(s)	352
BsaI	GGTCTC	1 cut(s)	756
BsaJI	CCNNGG	5 cut(s)	247, 596, 669, 701, 721
BsaWI	WCCGGW	1 cut(s)	780
Bsc4I	CCNNNNNNNGG	1 cut(s)	774
Bse1I	ACTGG	1 cut(s)	1015
Bse8I	GATNNNNATC	1 cut(s)	352
BseBI	CCWGG	2 cut(s)	792, 808
BseDI	CCNNGG	5 cut(s)	247, 596, 669, 701, 721
BseGI	GGATG	5 cut(s)	260, 353, 463, 549, 565
BseJI	GATNNNNATC	1 cut(s)	352
BseLI	CCNNNNNNNGG	1 cut(s)	774
BseMII	CTCAG	2 cut(s)	707, 767
BseNI	ACTGG	1 cut(s)	1015
BseRI	GAGGAG	2 cut(s)	944, 1015
BseXI	GCAGC	4 cut(s)	196, 304, 307, 509
BseYI	CCCAGC	1 cut(s)	811
BsgI	GTGCAG	2 cut(s)	96, 132
Bsh1236I	CGCG	1 cut(s)	125
BshFI	GGCC	1 cut(s)	961
BsiHKCI	CYCGRG	3 cut(s)	700, 721, 820
BsiSI	CCGG	5 cut(s)	191, 722, 768, 781, 958
BslFI	GGGAC	5 cut(s)	204, 599, 738, 791, 845
BslI	CCNNNNNNNGG	1 cut(s)	774
BsmAI	GTCTC	2 cut(s)	467, 756
BsmFI	GGGAC	5 cut(s)	204, 599, 738, 791, 845
BsmI	GAATGC	1 cut(s)	323
BsnI	GGCC	1 cut(s)	961
Bso31I	GGTCTC	1 cut(s)	756
BsoBI	CYCGRG	3 cut(s)	700, 721, 820
Bsp119I	TTCGAA	1 cut(s)	554
Bsp1286I	GDGCHC	2 cut(s)	722, 734
Bsp1407I	TGTACA	1 cut(s)	396
Bsp143I	GATC	4 cut(s)	363, 871, 882, 933
Bsp1720I	GCTNAGC	1 cut(s)	716
Bsp19I	CCATGG	1 cut(s)	247
BspANI	GGCC	1 cut(s)	961
BspCNI	CTCAG	2 cut(s)	708, 766
BspFNI	CGCG	1 cut(s)	125
BspLI	GGNNCC	3 cut(s)	189, 726, 779
BspMAI	CTGCAG	1 cut(s)	481
BspMI	ACCTGC	1 cut(s)	118
BspPI	GGATC	1 cut(s)	866
BspT104I	TTCGAA	1 cut(s)	554
BspTNI	GGTCTC	1 cut(s)	756
BsrGI	TGTACA	1 cut(s)	396
BsrI	ACTGG	1 cut(s)	1015
BssECI	CCNNGG	5 cut(s)	247, 596, 669, 701, 721
BssMI	GATC	4 cut(s)	363, 871, 882, 933
BssT1I	CCWWGG	3 cut(s)	247, 596, 669
Bst2UI	CCWGG	2 cut(s)	792, 808
Bst4CI	ACNGT	3 cut(s)	88, 121, 626
BstAUI	TGTACA	1 cut(s)	396
BstBI	TTCGAA	1 cut(s)	554
BstC8I	GCNNGC	1 cut(s)	298
BstDEI	CTNAG	2 cut(s)	716, 753
BstDSI	CCRYGG	1 cut(s)	247
BstF5I	GGATG	5 cut(s)	260, 353, 463, 549, 565
BstFNI	CGCG	1 cut(s)	125
BstH2I	RGCGCY	1 cut(s)	318
BstHHI	GCGC	1 cut(s)	317
BstKTI	GATC	4 cut(s)	366, 874, 885, 936
BstMAI	GTCTC	2 cut(s)	467, 756
BstMBI	GATC	4 cut(s)	363, 871, 882, 933
BstMWI	GCNNNNNNNGC	3 cut(s)	206, 655, 664
BstNI	CCWGG	2 cut(s)	792, 808
BstNSI	RCATGY	1 cut(s)	308
BstSCI	CCNGG	5 cut(s)	190, 720, 721, 790, 806
BstSFI	CTRYAG	1 cut(s)	477
BstUI	CGCG	1 cut(s)	125
BstV1I	GCAGC	4 cut(s)	196, 304, 307, 509
BstX2I	RGATCY	1 cut(s)	871
BstYI	RGATCY	1 cut(s)	871
BsuI	GTATCC	1 cut(s)	251
BsuRI	GGCC	1 cut(s)	961
BtgI	CCRYGG	1 cut(s)	247
BtsCI	GGATG	5 cut(s)	260, 353, 463, 549, 565
BtsIMutI	CAGTG	3 cut(s)	32, 342, 631
BveI	ACCTGC	1 cut(s)	118
Cac8I	GCNNGC	1 cut(s)	298
CaiI	CAGNNNCTG	1 cut(s)	317
CfoI	GCGC	1 cut(s)	317
Cfr13I	GGNCC	4 cut(s)	143, 725, 778, 794
Cfr9I	CCCGGG	1 cut(s)	721
Csp6I	GTAC	2 cut(s)	397, 686
CviAII	CATG	6 cut(s)	248, 305, 361, 394, 406, 452
CviQI	GTAC	2 cut(s)	397, 686
DdeI	CTNAG	2 cut(s)	716, 753
DpnI	GATC	4 cut(s)	365, 873, 884, 935
DpnII	GATC	4 cut(s)	363, 871, 882, 933
EaeI	YGGCCR	1 cut(s)	959
Eco130I	CCWWGG	3 cut(s)	247, 596, 669
Eco24I	GRGCYC	2 cut(s)	722, 734
Eco31I	GGTCTC	1 cut(s)	756
Eco47I	GGWCC	4 cut(s)	143, 725, 778, 794
Eco88I	CYCGRG	3 cut(s)	700, 721, 820
EcoO109I	RGGNCCY	1 cut(s)	143
EcoRII	CCWGG	2 cut(s)	790, 806
EcoT14I	CCWWGG	3 cut(s)	247, 596, 669
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	2 cut(s)	722, 734
ErhI	CCWWGG	3 cut(s)	247, 596, 669
FaeI	CATG	6 cut(s)	251, 308, 364, 397, 409, 455
FaqI	GGGAC	5 cut(s)	204, 599, 738, 791, 845
FatI	CATG	6 cut(s)	247, 304, 360, 393, 405, 451
FbaI	TGATCA	1 cut(s)	363
FblI	GTMKAC	1 cut(s)	1007
Fnu4HI	GCNGC	4 cut(s)	210, 318, 321, 498
FokI	GGATG	5 cut(s)	247, 360, 470, 552, 556
FriOI	GRGCYC	2 cut(s)	722, 734
Fsp4HI	GCNGC	4 cut(s)	210, 318, 321, 498
FspBI	CTAG	1 cut(s)	620
GlaI	GCGC	1 cut(s)	316
GluI	GCNGC	4 cut(s)	210, 318, 321, 498
GsaI	CCCAGC	1 cut(s)	815
HaeII	RGCGCY	1 cut(s)	318
HaeIII	GGCC	1 cut(s)	961
HapII	CCGG	5 cut(s)	191, 722, 768, 781, 958
HhaI	GCGC	1 cut(s)	317
Hin1II	CATG	6 cut(s)	251, 308, 364, 397, 409, 455
Hin6I	GCGC	1 cut(s)	315
HinP1I	GCGC	1 cut(s)	315
HincII	GTYRAC	2 cut(s)	91, 1008
HindII	GTYRAC	2 cut(s)	91, 1008
HinfI	GANTC	2 cut(s)	547, 616
HpaII	CCGG	5 cut(s)	191, 722, 768, 781, 958
HphI	GGTGA	1 cut(s)	878
Hpy166II	GTNNAC	2 cut(s)	91, 1008
Hpy188I	TCNGA	1 cut(s)	756
Hpy8I	GTNNAC	2 cut(s)	91, 1008
Hpy99I	CGWCG	1 cut(s)	979
HpyAV	CCTTC	1 cut(s)	550
HpyCH4III	ACNGT	3 cut(s)	88, 121, 626
HpyCH4V	TGCA	8 cut(s)	4, 113, 149, 323, 340, 443, 479, 840
HpyF10VI	GCNNNNNNNGC	3 cut(s)	206, 655, 664
HpyF3I	CTNAG	2 cut(s)	716, 753
Hsp92II	CATG	6 cut(s)	251, 308, 364, 397, 409, 455
HspAI	GCGC	1 cut(s)	315
Ksp22I	TGATCA	1 cut(s)	363
Kzo9I	GATC	4 cut(s)	363, 871, 882, 933
LmnI	GCTCC	1 cut(s)	193
Lsp1109I	GCAGC	4 cut(s)	196, 304, 307, 509
LweI	GCATC	3 cut(s)	13, 349, 505
MaeI	CTAG	1 cut(s)	620
MaeIII	GTNAC	1 cut(s)	307
MalI	GATC	4 cut(s)	365, 873, 884, 935
MboI	GATC	4 cut(s)	363, 871, 882, 933
MboII	GAAGA	5 cut(s)	348, 545, 881, 932, 962
MflI	RGATCY	1 cut(s)	871
MhlI	GDGCHC	2 cut(s)	722, 734
MluCI	AATT	4 cut(s)	201, 923, 941, 994
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	165
MseI	TTAA	3 cut(s)	483, 654, 909
MslI	CAYNNNNRTG	1 cut(s)	456
MspI	CCGG	5 cut(s)	191, 722, 768, 781, 958
MspR9I	CCNGG	5 cut(s)	192, 722, 723, 792, 808
Mva1269I	GAATGC	1 cut(s)	323
MvaI	CCWGG	2 cut(s)	792, 808
MvnI	CGCG	1 cut(s)	125
MwoI	GCNNNNNNNGC	3 cut(s)	206, 655, 664
NciI	CCSGG	3 cut(s)	192, 722, 723
NcoI	CCATGG	1 cut(s)	247
NdeII	GATC	4 cut(s)	363, 871, 882, 933
NlaIII	CATG	6 cut(s)	251, 308, 364, 397, 409, 455
NlaIV	GGNNCC	3 cut(s)	189, 726, 779
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	308
NspV	TTCGAA	1 cut(s)	554
PciI	ACATGT	1 cut(s)	304
PctI	GAATGC	1 cut(s)	323
PdmI	GAANNNNTTC	1 cut(s)	165
PfeI	GAWTC	2 cut(s)	547, 616
PfoI	TCCNGGA	1 cut(s)	190
PkrI	GCNGC	4 cut(s)	211, 319, 322, 499
PpuMI	RGGWCCY	1 cut(s)	143
PscI	ACATGT	1 cut(s)	304
Psp5II	RGGWCCY	1 cut(s)	143
Psp6I	CCWGG	2 cut(s)	790, 806
PspFI	CCCAGC	1 cut(s)	811
PspGI	CCWGG	2 cut(s)	790, 806
PspN4I	GGNNCC	3 cut(s)	189, 726, 779
PspPI	GGNCC	4 cut(s)	143, 725, 778, 794
PspPPI	RGGWCCY	1 cut(s)	143
PstI	CTGCAG	1 cut(s)	481
PstNI	CAGNNNCTG	1 cut(s)	317
PsuI	RGATCY	1 cut(s)	871
RsaI	GTAC	2 cut(s)	398, 687
RsaNI	GTAC	2 cut(s)	397, 686
RseI	CAYNNNNRTG	1 cut(s)	456
SalI	GTCGAC	1 cut(s)	1006
SaqAI	TTAA	3 cut(s)	483, 654, 909
SatI	GCNGC	4 cut(s)	210, 318, 321, 498
Sau3AI	GATC	4 cut(s)	363, 871, 882, 933
Sau96I	GGNCC	4 cut(s)	143, 725, 778, 794
ScrFI	CCNGG	5 cut(s)	192, 722, 723, 792, 808
SduI	GDGCHC	2 cut(s)	722, 734
SetI	ASST	9 cut(s)	104, 112, 145, 156, 211, 561, 607, 890, 1007
SfaNI	GCATC	3 cut(s)	13, 349, 505
SfcI	CTRYAG	1 cut(s)	477
SfuI	TTCGAA	1 cut(s)	554
SinI	GGWCC	4 cut(s)	143, 725, 778, 794
SmaI	CCCGGG	1 cut(s)	723
SmiMI	CAYNNNNRTG	1 cut(s)	456
SmlI	CTYRAG	2 cut(s)	170, 847
SmoI	CTYRAG	2 cut(s)	170, 847
Sse9I	AATT	4 cut(s)	201, 923, 941, 994
SspMI	CTAG	1 cut(s)	620
StyD4I	CCNGG	5 cut(s)	190, 720, 721, 790, 806
StyI	CCWWGG	3 cut(s)	247, 596, 669
TaaI	ACNGT	3 cut(s)	88, 121, 626
TaqI	TCGA	4 cut(s)	137, 554, 936, 1007
TaqII	GACCGA	3 cut(s)	738, 742, 811
TasI	AATT	4 cut(s)	201, 923, 941, 994
TatI	WGTACW	2 cut(s)	396, 685
TfiI	GAWTC	2 cut(s)	547, 616
Tru1I	TTAA	3 cut(s)	483, 654, 909
Tru9I	TTAA	3 cut(s)	483, 654, 909
TscAI	CASTG	3 cut(s)	39, 342, 631
TseI	GCWGC	4 cut(s)	209, 317, 320, 497
TspDTI	ATGAA	7 cut(s)	123, 316, 422, 539, 554, 560, 773
TspMI	CCCGGG	1 cut(s)	721
TspRI	CASTG	3 cut(s)	39, 342, 631
VpaK11BI	GGWCC	4 cut(s)	143, 725, 778, 794
XapI	RAATTY	3 cut(s)	923, 941, 994
XbaI	TCTAGA	1 cut(s)	619
XceI	RCATGY	1 cut(s)	308
XcmI	CCANNNNNNNNNTGG	1 cut(s)	537
XmaI	CCCGGG	1 cut(s)	721
XmiI	GTMKAC	1 cut(s)	1007
XmnI	GAANNNNTTC	1 cut(s)	165
XspI	CTAG	1 cut(s)	620
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.