Rh7AG127500

PAS fold

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0008833
Physical Location & Seq
Forward (+)
10099303 .. 10103191
3889 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG127500.1

Sequence Viewer

Length: 600 bp
ATGGAGTACAGCCTCGGTGGACTCAGCGAAGTTGGAGTGGGAGGTGAGCTCGACATGCTCATGGGAATTGGTGACGGTGGAGACCATCAGGGAAGGGTTTCTGCAATTTCAAAAAGACCCGTCGCAGAGTCGGTGGAATGTCGAAGTCGGAAACACTACCGTTCCGGGTCCGTCCGTGGCGAAATTGAGCTTGGGCGACCTGGCTTTCTTTCTCATGGGCTCATGGCCTTCATCACCTGCACGGGAGAAGTACAGTATTTTATTGGAGTACAACTTGATGGCAGTCAGCACATTGAGCCTCTGCATAACTCTATTCCTGAAGTTACAGTAAAAGAAAGTGAAAAACTGGTCAAAGAGACTGCAGTTAATGTTGATGAGGCAGCAAGAGAACTTCCAGATGCCAATATGAAACTAGAAGATTTATGGATGAATCATTCGAAGGTCGTTCATCCAAAGCCTCATAGACGTGACAGCCCCCCTTGGAGAGCTATTCAAAAGATTCTAGACAGTGGAGAACAGATAGGATTGAAGCATTTTAAGCCTATAAAGCCCTTGGGATCTGGTGATACTGGCAGGTTTGAAGTAGTCTATGGAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0007623 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009628 GO:0009637 GO:0009638 GO:0009657 GO:0009658 GO:0009785 GO:0009881 GO:0009882 GO:0009898 GO:0009902 GO:0009903 GO:0009904 GO:0009986 GO:0009987 GO:0010119 GO:0010155 GO:0010181 GO:0010359 GO:0010360 GO:0010361 GO:0010362 GO:0016020 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019750 GO:0022898 GO:0023052 GO:0030522 GO:0032409 GO:0032410 GO:0032412 GO:0032413 GO:0032553 GO:0032879 GO:0034762 GO:0034763 GO:0034765 GO:0034766 GO:0035556 GO:0036094 GO:0036211 GO:0038023 GO:0042802 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0043271 GO:0043412 GO:0044070 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046777 GO:0048037 GO:0048511 GO:0048519 GO:0050662 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051051 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051644 GO:0051649 GO:0051656 GO:0051667 GO:0051716 GO:0060089 GO:0065007 GO:0065009 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0097367 GO:0098552 GO:0098562 GO:0104004 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1903792 GO:1903959 GO:1903960 GO:1904062
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAS_9 Pkinase

Protein Analysis

199

Amino Acids

21.88

Weight (kDa)

6.14

Isoelectric Point (pI)

43.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 245
Acc36I ACCTGC 2 cut(s) 245, 564
AclWI GGATC 1 cut(s) 565
AcuI CTGAAG 1 cut(s) 339
AfaI GTAC 3 cut(s) 8, 252, 270
AgsI TTSAA 4 cut(s) 111, 494, 529, 581
AjiI CACGTC 1 cut(s) 467
AjnI CCWGG 1 cut(s) 199
AjuI GAANNNNNNNTTGG 2 cut(s) 174, 206
AluBI AGCT 3 cut(s) 49, 190, 488
AluI AGCT 3 cut(s) 49, 190, 488
Alw21I GWGCWC 1 cut(s) 51
Alw26I GTCTC 2 cut(s) 75, 350
AlwI GGATC 1 cut(s) 565
AoxI GGCC 1 cut(s) 225
ApeKI GCWGC 1 cut(s) 380
Asp700I GAANNNNTTC 1 cut(s) 97
AspS9I GGNCC 1 cut(s) 168
AsuC2I CCSGG 1 cut(s) 166
AsuHPI GGTGA 4 cut(s) 56, 83, 226, 575
AsuII TTCGAA 1 cut(s) 437
AvaII GGWCC 1 cut(s) 168
BanII GRGCYC 2 cut(s) 51, 222
Bbv12I GWGCWC 1 cut(s) 51
BbvI GCAGC 1 cut(s) 392
BccI CCATC 2 cut(s) 93, 272
BciT130I CCWGG 1 cut(s) 201
BcnI CCSGG 1 cut(s) 166
BcoDI GTCTC 2 cut(s) 75, 350
BfaI CTAG 2 cut(s) 413, 503
BfmI CTRYAG 1 cut(s) 360
BfuAI ACCTGC 2 cut(s) 245, 564
BisI GCNGC 1 cut(s) 381
BlsI GCNGC 1 cut(s) 382
Bme1390I CCNGG 2 cut(s) 166, 201
Bme18I GGWCC 1 cut(s) 168
BmgBI CACGTC 1 cut(s) 467
BmgT120I GGNCC 1 cut(s) 168
BmiI GGNNCC 1 cut(s) 169
BmrFI CCNGG 2 cut(s) 166, 201
BmsI GCATC 1 cut(s) 388
BplI GAGNNNNNCTC 2 cut(s) 33, 65
Bpu14I TTCGAA 1 cut(s) 437
BpuMI CCSGG 1 cut(s) 166
BsaI GGTCTC 1 cut(s) 75
BsaJI CCNNGG 4 cut(s) 13, 175, 479, 552
Bse1I ACTGG 2 cut(s) 351, 574
BseBI CCWGG 1 cut(s) 201
BseDI CCNNGG 4 cut(s) 13, 175, 479, 552
BseGI GGATG 2 cut(s) 432, 448
BseMII CTCAG 1 cut(s) 37
BseNI ACTGG 2 cut(s) 351, 574
BseXI GCAGC 1 cut(s) 392
BsgI GTGCAG 1 cut(s) 223
BshFI GGCC 1 cut(s) 227
BsiHKAI GWGCWC 1 cut(s) 51
BsiSI CCGG 1 cut(s) 165
BsmAI GTCTC 2 cut(s) 75, 350
BsnI GGCC 1 cut(s) 227
Bso31I GGTCTC 1 cut(s) 75
Bsp119I TTCGAA 1 cut(s) 437
Bsp1286I GDGCHC 2 cut(s) 51, 222
Bsp143I GATC 1 cut(s) 557
BspANI GGCC 1 cut(s) 227
BspCNI CTCAG 1 cut(s) 36
BspLI GGNNCC 1 cut(s) 169
BspMAI CTGCAG 1 cut(s) 364
BspMI ACCTGC 2 cut(s) 245, 564
BspPI GGATC 1 cut(s) 565
BspT104I TTCGAA 1 cut(s) 437
BspTNI GGTCTC 1 cut(s) 75
BsrI ACTGG 2 cut(s) 351, 574
BssECI CCNNGG 4 cut(s) 13, 175, 479, 552
BssMI GATC 1 cut(s) 557
BssT1I CCWWGG 2 cut(s) 479, 552
Bst2UI CCWGG 1 cut(s) 201
Bst4CI ACNGT 5 cut(s) 77, 161, 255, 328, 509
BstBI TTCGAA 1 cut(s) 437
BstDEI CTNAG 1 cut(s) 23
BstDSI CCRYGG 1 cut(s) 175
BstF5I GGATG 2 cut(s) 432, 448
BstKTI GATC 1 cut(s) 560
BstMAI GTCTC 2 cut(s) 75, 350
BstMBI GATC 1 cut(s) 557
BstMWI GCNNNNNNNGC 4 cut(s) 55, 295, 538, 547
BstNI CCWGG 1 cut(s) 201
BstNSI RCATGY 1 cut(s) 58
BstSCI CCNGG 2 cut(s) 164, 199
BstSFI CTRYAG 1 cut(s) 360
BstV1I GCAGC 1 cut(s) 392
BstX2I RGATCY 1 cut(s) 557
BstYI RGATCY 1 cut(s) 557
BsuRI GGCC 1 cut(s) 227
BtgI CCRYGG 1 cut(s) 175
BtrI CACGTC 1 cut(s) 467
BtsCI GGATG 2 cut(s) 432, 448
BtsIMutI CAGTG 1 cut(s) 514
BveI ACCTGC 2 cut(s) 245, 564
Cfr13I GGNCC 1 cut(s) 168
Csp6I GTAC 3 cut(s) 7, 251, 269
CviAII CATG 4 cut(s) 55, 61, 215, 223
CviQI GTAC 3 cut(s) 7, 251, 269
DdeI CTNAG 1 cut(s) 23
DpnI GATC 1 cut(s) 559
DpnII GATC 1 cut(s) 557
Ecl136II GAGCTC 1 cut(s) 49
Eco130I CCWWGG 2 cut(s) 479, 552
Eco24I GRGCYC 2 cut(s) 51, 222
Eco31I GGTCTC 1 cut(s) 75
Eco47I GGWCC 1 cut(s) 168
Eco53kI GAGCTC 1 cut(s) 49
Eco57I CTGAAG 1 cut(s) 339
EcoICRI GAGCTC 1 cut(s) 49
EcoRII CCWGG 1 cut(s) 199
EcoT14I CCWWGG 2 cut(s) 479, 552
EcoT38I GRGCYC 2 cut(s) 51, 222
ErhI CCWWGG 2 cut(s) 479, 552
FaeI CATG 4 cut(s) 58, 64, 218, 226
FatI CATG 4 cut(s) 54, 60, 214, 222
Fnu4HI GCNGC 1 cut(s) 381
FokI GGATG 2 cut(s) 435, 439
FriOI GRGCYC 2 cut(s) 51, 222
Fsp4HI GCNGC 1 cut(s) 381
FspBI CTAG 2 cut(s) 413, 503
GluI GCNGC 1 cut(s) 381
HaeIII GGCC 1 cut(s) 227
HapII CCGG 1 cut(s) 165
Hin1II CATG 4 cut(s) 58, 64, 218, 226
HinfI GANTC 4 cut(s) 21, 128, 430, 499
HpaII CCGG 1 cut(s) 165
HphI GGTGA 4 cut(s) 56, 83, 226, 575
Hpy166II GTNNAC 1 cut(s) 20
Hpy188I TCNGA 1 cut(s) 150
Hpy188III TCNNGA 3 cut(s) 317, 395, 503
Hpy8I GTNNAC 1 cut(s) 20
Hpy99I CGWCG 1 cut(s) 125
HpyAV CCTTC 3 cut(s) 87, 238, 433
HpyCH4III ACNGT 5 cut(s) 77, 161, 255, 328, 509
HpyCH4IV ACGT 1 cut(s) 466
HpyCH4V TGCA 4 cut(s) 104, 240, 304, 362
HpyF10VI GCNNNNNNNGC 4 cut(s) 55, 295, 538, 547
HpyF3I CTNAG 1 cut(s) 23
HpySE526I ACGT 1 cut(s) 466
Hsp92II CATG 4 cut(s) 58, 64, 218, 226
Kzo9I GATC 1 cut(s) 557
Lsp1109I GCAGC 1 cut(s) 392
LweI GCATC 1 cut(s) 388
MaeI CTAG 2 cut(s) 413, 503
MaeII ACGT 1 cut(s) 466
MaeIII GTNAC 3 cut(s) 71, 322, 467
MalI GATC 1 cut(s) 559
MboI GATC 1 cut(s) 557
MboII GAAGA 1 cut(s) 428
MflI RGATCY 1 cut(s) 557
MhlI GDGCHC 2 cut(s) 51, 222
MluCI AATT 4 cut(s) 66, 105, 183, 595
MlyI GAGTC 2 cut(s) 15, 137
MmeI TCCRAC 2 cut(s) 13, 128
MnlI CCTC 5 cut(s) 23, 35, 309, 370, 468
MroXI GAANNNNTTC 1 cut(s) 97
MseI TTAA 2 cut(s) 366, 537
MslI CAYNNNNRTG 2 cut(s) 59, 465
MspI CCGG 1 cut(s) 165
MspR9I CCNGG 2 cut(s) 166, 201
MvaI CCWGG 1 cut(s) 201
MwoI GCNNNNNNNGC 4 cut(s) 55, 295, 538, 547
NciI CCSGG 1 cut(s) 166
NdeII GATC 1 cut(s) 557
NlaIII CATG 4 cut(s) 58, 64, 218, 226
NlaIV GGNNCC 1 cut(s) 169
NmuCI GTSAC 2 cut(s) 71, 467
NspI RCATGY 1 cut(s) 58
NspV TTCGAA 1 cut(s) 437
PaqCI CACCTGC 1 cut(s) 245
PdmI GAANNNNTTC 1 cut(s) 97
PfeI GAWTC 2 cut(s) 430, 499
PkrI GCNGC 1 cut(s) 382
PleI GAGTC 2 cut(s) 15, 136
PpsI GAGTC 2 cut(s) 15, 136
Psp124BI GAGCTC 1 cut(s) 51
Psp6I CCWGG 1 cut(s) 199
PspGI CCWGG 1 cut(s) 199
PspN4I GGNNCC 1 cut(s) 169
PspPI GGNCC 1 cut(s) 168
PstI CTGCAG 1 cut(s) 364
PsuI RGATCY 1 cut(s) 557
RsaI GTAC 3 cut(s) 8, 252, 270
RsaNI GTAC 3 cut(s) 7, 251, 269
RseI CAYNNNNRTG 2 cut(s) 59, 465
SacI GAGCTC 1 cut(s) 51
SaqAI TTAA 2 cut(s) 366, 537
SatI GCNGC 1 cut(s) 381
Sau3AI GATC 1 cut(s) 557
Sau96I GGNCC 1 cut(s) 168
SchI GAGTC 2 cut(s) 15, 137
ScrFI CCNGG 2 cut(s) 166, 201
SduI GDGCHC 2 cut(s) 51, 222
SetI ASST 9 cut(s) 46, 51, 192, 202, 239, 444, 469, 490, 578
SfaNI GCATC 1 cut(s) 388
SfcI CTRYAG 1 cut(s) 360
SfuI TTCGAA 1 cut(s) 437
SinI GGWCC 1 cut(s) 168
SmiMI CAYNNNNRTG 2 cut(s) 59, 465
Sse9I AATT 4 cut(s) 66, 105, 183, 595
SspMI CTAG 2 cut(s) 413, 503
SstI GAGCTC 1 cut(s) 51
StyD4I CCNGG 2 cut(s) 164, 199
StyI CCWWGG 2 cut(s) 479, 552
TaaI ACNGT 5 cut(s) 77, 161, 255, 328, 509
TaiI ACGT 1 cut(s) 469
TaqI TCGA 3 cut(s) 51, 142, 437
TasI AATT 4 cut(s) 66, 105, 183, 595
TatI WGTACW 3 cut(s) 6, 250, 268
TfiI GAWTC 2 cut(s) 430, 499
Tru1I TTAA 2 cut(s) 366, 537
Tru9I TTAA 2 cut(s) 366, 537
TscAI CASTG 1 cut(s) 514
TseFI GTSAC 2 cut(s) 71, 467
TseI GCWGC 1 cut(s) 380
Tsp45I GTSAC 2 cut(s) 71, 467
TspDTI ATGAA 4 cut(s) 220, 422, 437, 443
TspGWI ACGGA 2 cut(s) 160, 164
TspRI CASTG 1 cut(s) 514
VpaK11BI GGWCC 1 cut(s) 168
XbaI TCTAGA 1 cut(s) 502
XceI RCATGY 1 cut(s) 58
XmnI GAANNNNTTC 1 cut(s) 97
XspI CTAG 2 cut(s) 413, 503
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.