Rroxscaffold_5G00366050

PAS fold

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0008833
Physical Location & Seq
Reverse (-)
47819834 .. 47824807
4974 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00366050.1

Sequence Viewer

Length: 444 bp
ATGAAAAAGGATCCACGGCAATGCAGATATCGGAATGCAGATTCTGAACGAGCTTCTGCACATTCTAAAAAAACCGGAGAAGTACAGTATTTTATTGGAGTACCACTTGATGGCAGTCAGCACATTGAGCCTCTGCATAACTCTATTCCTGAAGTTACAGTAAAAGAAAGTGAAAAACTGGTCAAAGAGACTGCAGTTAATGTTGATGAGGCAGCAAGAGAACTTCCATATGCCAATATGATTCTAGACAGTGGAGAACAGATAGGATTGAAGCATTTTAAGCCTATAAAGCCCTTGGGATCTGGTGATACTGGCAGAAGGAGGTTCCATCATGAAGAGACCAGCAACTACCATTTTAAGAGCAAGGTTGAGGTCAAGGAAGAGCATGAGGAAGGCAAAGAAAGAGCCTTGGGTTTGTTCAAGGTTATAAAGAACCACCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0007623 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009628 GO:0009637 GO:0009638 GO:0009657 GO:0009658 GO:0009785 GO:0009881 GO:0009882 GO:0009898 GO:0009902 GO:0009903 GO:0009904 GO:0009986 GO:0009987 GO:0010119 GO:0010155 GO:0010181 GO:0010359 GO:0010360 GO:0010361 GO:0010362 GO:0016020 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019750 GO:0022898 GO:0023052 GO:0030522 GO:0032409 GO:0032410 GO:0032412 GO:0032413 GO:0032553 GO:0032879 GO:0034762 GO:0034763 GO:0034765 GO:0034766 GO:0035556 GO:0036094 GO:0036211 GO:0038023 GO:0042802 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0043271 GO:0043412 GO:0044070 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046777 GO:0048037 GO:0048511 GO:0048519 GO:0050662 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051051 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051644 GO:0051649 GO:0051656 GO:0051667 GO:0051716 GO:0060089 GO:0065007 GO:0065009 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0097367 GO:0098552 GO:0098562 GO:0104004 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1903792 GO:1903959 GO:1903960 GO:1904062
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAS_9 Pkinase

Protein Analysis

147

Amino Acids

16.78

Weight (kDa)

7.89

Isoelectric Point (pI)

32.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 428
AccB7I CCANNNNNTGG 1 cut(s) 110
AclWI GGATC 3 cut(s) 5, 18, 307
AcuI CTGAAG 1 cut(s) 171
AfaI GTAC 2 cut(s) 84, 102
AfiI CCNNNNNNNGG 1 cut(s) 110
AgsI TTSAA 2 cut(s) 271, 421
AluBI AGCT 1 cut(s) 53
AluI AGCT 1 cut(s) 53
Alw26I GTCTC 2 cut(s) 182, 332
AlwI GGATC 3 cut(s) 5, 18, 307
AlwNI CAGNNNCTG 1 cut(s) 44
ApeKI GCWGC 1 cut(s) 212
AsuHPI GGTGA 1 cut(s) 317
BamHI GGATCC 1 cut(s) 10
BbvI GCAGC 1 cut(s) 224
BccI CCATC 2 cut(s) 104, 336
BceAI ACGGC 1 cut(s) 32
BcoDI GTCTC 2 cut(s) 182, 332
BfaI CTAG 1 cut(s) 245
BfmI CTRYAG 1 cut(s) 192
BisI GCNGC 1 cut(s) 213
BlsI GCNGC 1 cut(s) 214
BmiI GGNNCC 2 cut(s) 12, 326
BsaI GGTCTC 1 cut(s) 332
BsaJI CCNNGG 3 cut(s) 14, 294, 408
BsaWI WCCGGW 1 cut(s) 74
Bsc4I CCNNNNNNNGG 1 cut(s) 110
Bse1I ACTGG 2 cut(s) 183, 316
Bse3DI GCAATG 1 cut(s) 26
BseDI CCNNGG 3 cut(s) 14, 294, 408
BseLI CCNNNNNNNGG 1 cut(s) 110
BseMI GCAATG 1 cut(s) 26
BseNI ACTGG 2 cut(s) 183, 316
BseXI GCAGC 1 cut(s) 224
BsgI GTGCAG 1 cut(s) 42
BsiSI CCGG 1 cut(s) 75
BslI CCNNNNNNNGG 1 cut(s) 110
BsmAI GTCTC 2 cut(s) 182, 332
BsmI GAATGC 1 cut(s) 40
Bso31I GGTCTC 1 cut(s) 332
Bsp143I GATC 2 cut(s) 10, 299
BspHI TCATGA 1 cut(s) 331
BspLI GGNNCC 2 cut(s) 12, 326
BspMAI CTGCAG 1 cut(s) 196
BspPI GGATC 3 cut(s) 5, 18, 307
BspQI GCTCTTC 1 cut(s) 375
BspTNI GGTCTC 1 cut(s) 332
BsrDI GCAATG 1 cut(s) 26
BsrI ACTGG 2 cut(s) 183, 316
BssECI CCNNGG 3 cut(s) 14, 294, 408
BssMI GATC 2 cut(s) 10, 299
BssT1I CCWWGG 2 cut(s) 294, 408
Bst4CI ACNGT 3 cut(s) 87, 160, 251
Bst6I CTCTTC 2 cut(s) 330, 375
BstDSI CCRYGG 1 cut(s) 14
BstKTI GATC 2 cut(s) 13, 302
BstMAI GTCTC 2 cut(s) 182, 332
BstMBI GATC 2 cut(s) 10, 299
BstMWI GCNNNNNNNGC 3 cut(s) 127, 280, 289
BstSFI CTRYAG 1 cut(s) 192
BstV1I GCAGC 1 cut(s) 224
BstX2I RGATCY 2 cut(s) 10, 299
BstYI RGATCY 2 cut(s) 10, 299
BtgI CCRYGG 1 cut(s) 14
BtsIMutI CAGTG 1 cut(s) 256
CaiI CAGNNNCTG 1 cut(s) 44
CciI TCATGA 1 cut(s) 331
Csp6I GTAC 2 cut(s) 83, 101
CviAII CATG 2 cut(s) 332, 386
CviJI RGCY 5 cut(s) 53, 130, 283, 292, 407
CviKI_1 RGCY 5 cut(s) 53, 130, 283, 292, 407
CviQI GTAC 2 cut(s) 83, 101
DpnI GATC 2 cut(s) 12, 301
DpnII GATC 2 cut(s) 10, 299
Eam1104I CTCTTC 2 cut(s) 330, 375
EarI CTCTTC 2 cut(s) 330, 375
Eco130I CCWWGG 2 cut(s) 294, 408
Eco31I GGTCTC 1 cut(s) 332
Eco32I GATATC 1 cut(s) 29
Eco57I CTGAAG 1 cut(s) 171
EcoRV GATATC 1 cut(s) 29
EcoT14I CCWWGG 2 cut(s) 294, 408
ErhI CCWWGG 2 cut(s) 294, 408
FaeI CATG 2 cut(s) 335, 389
FaiI YATR 8 cut(s) 138, 229, 231, 239, 287, 333, 387, 428
FatI CATG 2 cut(s) 331, 385
FauNDI CATATG 1 cut(s) 229
Fnu4HI GCNGC 1 cut(s) 213
Fsp4HI GCNGC 1 cut(s) 213
FspBI CTAG 1 cut(s) 245
GluI GCNGC 1 cut(s) 213
HapII CCGG 1 cut(s) 75
Hin1II CATG 2 cut(s) 335, 389
HinfI GANTC 2 cut(s) 41, 241
HpaII CCGG 1 cut(s) 75
HphI GGTGA 1 cut(s) 317
Hpy188I TCNGA 2 cut(s) 33, 46
Hpy188III TCNNGA 3 cut(s) 149, 245, 332
HpyAV CCTTC 2 cut(s) 312, 386
HpyCH4III ACNGT 3 cut(s) 87, 160, 251
HpyCH4V TGCA 5 cut(s) 24, 38, 59, 136, 194
HpyF10VI GCNNNNNNNGC 3 cut(s) 127, 280, 289
Hsp92II CATG 2 cut(s) 335, 389
Kzo9I GATC 2 cut(s) 10, 299
LguI GCTCTTC 1 cut(s) 375
LpnPI CCDG 6 cut(s) 88, 162, 164, 288, 297, 355
Lsp1109I GCAGC 1 cut(s) 224
MaeI CTAG 1 cut(s) 245
MaeIII GTNAC 1 cut(s) 154
MalI GATC 2 cut(s) 12, 301
MboI GATC 2 cut(s) 10, 299
MboII GAAGA 2 cut(s) 347, 392
MflI RGATCY 2 cut(s) 10, 299
MnlI CCTC 5 cut(s) 141, 202, 315, 364, 382
MseI TTAA 3 cut(s) 198, 279, 357
MslI CAYNNNNRTG 1 cut(s) 19
MspI CCGG 1 cut(s) 75
Mva1269I GAATGC 1 cut(s) 40
MwoI GCNNNNNNNGC 3 cut(s) 127, 280, 289
NdeI CATATG 1 cut(s) 229
NdeII GATC 2 cut(s) 10, 299
NlaIII CATG 2 cut(s) 335, 389
NlaIV GGNNCC 2 cut(s) 12, 326
PagI TCATGA 1 cut(s) 331
PciSI GCTCTTC 1 cut(s) 375
PctI GAATGC 1 cut(s) 40
PfeI GAWTC 2 cut(s) 41, 241
PflMI CCANNNNNTGG 1 cut(s) 110
PkrI GCNGC 1 cut(s) 214
PsiI TTATAA 1 cut(s) 428
PspN4I GGNNCC 2 cut(s) 12, 326
PstI CTGCAG 1 cut(s) 196
PstNI CAGNNNCTG 1 cut(s) 44
PsuI RGATCY 2 cut(s) 10, 299
RsaI GTAC 2 cut(s) 84, 102
RsaNI GTAC 2 cut(s) 83, 101
RseI CAYNNNNRTG 1 cut(s) 19
SapI GCTCTTC 1 cut(s) 375
SaqAI TTAA 3 cut(s) 198, 279, 357
SatI GCNGC 1 cut(s) 213
Sau3AI GATC 2 cut(s) 10, 299
SetI ASST 6 cut(s) 55, 326, 369, 375, 426, 441
SfcI CTRYAG 1 cut(s) 192
SmiMI CAYNNNNRTG 1 cut(s) 19
SspMI CTAG 1 cut(s) 245
StyI CCWWGG 2 cut(s) 294, 408
TaaI ACNGT 3 cut(s) 87, 160, 251
TatI WGTACW 1 cut(s) 82
TfiI GAWTC 2 cut(s) 41, 241
Tru1I TTAA 3 cut(s) 198, 279, 357
Tru9I TTAA 3 cut(s) 198, 279, 357
TscAI CASTG 1 cut(s) 256
TseI GCWGC 1 cut(s) 212
TspDTI ATGAA 2 cut(s) 17, 348
TspRI CASTG 1 cut(s) 256
Van91I CCANNNNNTGG 1 cut(s) 110
XbaI TCTAGA 1 cut(s) 244
XspI CTAG 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.