Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0008833

Physical Location & Seq

Genomic Coordinates Reverse (-)

5742249 .. 5743369

Gene Structure 1121 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG032100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGCTGAGCCCGGGACCGAGCCCGAAGTTTTCGGGTCGGTCTCAGATGAAGTTTTCCGGCAGTCGGGACCGGAGAGAGCCTGGACCGATGTTTTCCAGGCCGGGTTTCTCGGGTTTTCGGGCCTTTTGCACCATCTCAAGATTTGAAAAATCCGGTGAAGATCCACCACCGATCCGGTTAGAAACAGATCAACCGATGAAGGAACTTGAAGAATTTGAGGAGATCGAGGAATTTGACGAAGAAATCCGGCCAAAAACACATTCGTCGTGGTTTAGATGGAGGAATTTGAGGAGGTCGACTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

101

Amino Acids

11.85

Weight (kDa)

7.93

Isoelectric Point (pI)

93.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008833)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g27651
rosa_chinensis	RchiOBHm_Chr1g0330501 RchiOBHm_Chr1g0341541 RchiOBHm_Chr3g0493181 RchiOBHm_Chr5g0068631 RchiOBHm_Chr7g0200611 RchiOBHm_Chr7g0235681 RchiOBHm_Chr7g0242661
rosa_multiflora	Rmu_sc0002539.1_g000024
rosa_roxburghii	Rroxscaffold_1G00071600 Rroxscaffold_3G00223660 Rroxscaffold_5G00346520 Rroxscaffold_5G00366050
rosa_rugosa	Rorug05G0582300
rosa_samantha	Rh3AG308700 Rh4BG032100 Rh5AG071000 Rh5AG405200 Rh5CG079900 Rh7AG127500 Rh7CG198000
rosa_wichuraiana	Rw1G003250 Rw5G028180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	296
AclWI	GGATC	2 cut(s)	155, 166
AcoI	YGGCCR	1 cut(s)	248
AcsI	RAATTY	3 cut(s)	212, 230, 283
AfiI	CCNNNNNNNGG	1 cut(s)	63
AgsI	TTSAA	2 cut(s)	146, 209
AjnI	CCWGG	2 cut(s)	79, 95
AjuI	GAANNNNNNNTTGG	2 cut(s)	244, 276
Alw26I	GTCTC	1 cut(s)	45
AlwI	GGATC	2 cut(s)	155, 166
Ama87I	CYCGRG	2 cut(s)	10, 109
AoxI	GGCC	3 cut(s)	98, 120, 248
ApoI	RAATTY	3 cut(s)	212, 230, 283
AspS9I	GGNCC	4 cut(s)	14, 67, 83, 120
AsuC2I	CCSGG	3 cut(s)	11, 12, 102
AsuHPI	GGTGA	1 cut(s)	167
AvaI	CYCGRG	2 cut(s)	10, 109
AvaII	GGWCC	3 cut(s)	14, 67, 83
BanII	GRGCYC	2 cut(s)	11, 23
BccI	CCATC	2 cut(s)	140, 270
BciT130I	CCWGG	2 cut(s)	81, 97
BcnI	CCSGG	3 cut(s)	11, 12, 102
BcoDI	GTCTC	1 cut(s)	45
BlpI	GCTNAGC	1 cut(s)	5
Bme1390I	CCNGG	5 cut(s)	11, 12, 81, 97, 102
Bme18I	GGWCC	3 cut(s)	14, 67, 83
BmeT110I	CYCGRG	2 cut(s)	10, 109
BmgT120I	GGNCC	4 cut(s)	14, 67, 83, 120
BmiI	GGNNCC	2 cut(s)	15, 68
BmrFI	CCNGG	5 cut(s)	11, 12, 81, 97, 102
Bpu1102I	GCTNAGC	1 cut(s)	5
BpuEI	CTTGAG	1 cut(s)	121
BpuMI	CCSGG	3 cut(s)	11, 12, 102
BsaI	GGTCTC	1 cut(s)	45
BsaJI	CCNNGG	1 cut(s)	10
BsaWI	WCCGGW	3 cut(s)	69, 152, 174
Bsc4I	CCNNNNNNNGG	1 cut(s)	63
Bse1I	ACTGG	1 cut(s)	304
BseBI	CCWGG	2 cut(s)	81, 97
BseDI	CCNNGG	1 cut(s)	10
BseLI	CCNNNNNNNGG	1 cut(s)	63
BseMII	CTCAG	1 cut(s)	56
BseNI	ACTGG	1 cut(s)	304
BseRI	GAGGAG	2 cut(s)	233, 304
BshFI	GGCC	3 cut(s)	100, 122, 250
BsiHKCI	CYCGRG	2 cut(s)	10, 109
BsiSI	CCGG	7 cut(s)	11, 57, 70, 101, 153, 175, 247
BslFI	GGGAC	2 cut(s)	27, 80
BslI	CCNNNNNNNGG	1 cut(s)	63
BsmAI	GTCTC	1 cut(s)	45
BsmFI	GGGAC	2 cut(s)	27, 80
BsnI	GGCC	3 cut(s)	100, 122, 250
Bso31I	GGTCTC	1 cut(s)	45
BsoBI	CYCGRG	2 cut(s)	10, 109
Bsp1286I	GDGCHC	2 cut(s)	11, 23
Bsp143I	GATC	4 cut(s)	160, 171, 187, 222
Bsp1720I	GCTNAGC	1 cut(s)	5
BspANI	GGCC	3 cut(s)	100, 122, 250
BspCNI	CTCAG	1 cut(s)	55
BspLI	GGNNCC	2 cut(s)	15, 68
BspPI	GGATC	2 cut(s)	155, 166
BspTNI	GGTCTC	1 cut(s)	45
BsrI	ACTGG	1 cut(s)	304
BssECI	CCNNGG	1 cut(s)	10
BssMI	GATC	4 cut(s)	160, 171, 187, 222
Bst2UI	CCWGG	2 cut(s)	81, 97
BstDEI	CTNAG	2 cut(s)	5, 42
BstKTI	GATC	4 cut(s)	163, 174, 190, 225
BstMAI	GTCTC	1 cut(s)	45
BstMBI	GATC	4 cut(s)	160, 171, 187, 222
BstNI	CCWGG	2 cut(s)	81, 97
BstSCI	CCNGG	5 cut(s)	9, 10, 79, 95, 100
BstX2I	RGATCY	1 cut(s)	160
BstYI	RGATCY	1 cut(s)	160
BsuRI	GGCC	3 cut(s)	100, 122, 250
Cfr13I	GGNCC	4 cut(s)	14, 67, 83, 120
Cfr9I	CCCGGG	1 cut(s)	10
CviJI	RGCY	6 cut(s)	9, 21, 79, 100, 122, 250
CviKI_1	RGCY	6 cut(s)	9, 21, 79, 100, 122, 250
DdeI	CTNAG	2 cut(s)	5, 42
DpnI	GATC	4 cut(s)	162, 173, 189, 224
DpnII	GATC	4 cut(s)	160, 171, 187, 222
EaeI	YGGCCR	1 cut(s)	248
Eco24I	GRGCYC	2 cut(s)	11, 23
Eco31I	GGTCTC	1 cut(s)	45
Eco47I	GGWCC	3 cut(s)	14, 67, 83
Eco88I	CYCGRG	2 cut(s)	10, 109
EcoRII	CCWGG	2 cut(s)	79, 95
EcoT38I	GRGCYC	2 cut(s)	11, 23
FaqI	GGGAC	2 cut(s)	27, 80
FblI	GTMKAC	1 cut(s)	296
FriOI	GRGCYC	2 cut(s)	11, 23
HaeIII	GGCC	3 cut(s)	100, 122, 250
HapII	CCGG	7 cut(s)	11, 57, 70, 101, 153, 175, 247
HincII	GTYRAC	1 cut(s)	297
HindII	GTYRAC	1 cut(s)	297
HpaII	CCGG	7 cut(s)	11, 57, 70, 101, 153, 175, 247
HphI	GGTGA	1 cut(s)	167
Hpy166II	GTNNAC	1 cut(s)	297
Hpy188I	TCNGA	1 cut(s)	45
Hpy188III	TCNNGA	2 cut(s)	65, 138
Hpy8I	GTNNAC	1 cut(s)	297
Hpy99I	CGWCG	1 cut(s)	268
HpyAV	CCTTC	1 cut(s)	193
HpyCH4V	TGCA	1 cut(s)	129
HpyF3I	CTNAG	2 cut(s)	5, 42
Kzo9I	GATC	4 cut(s)	160, 171, 187, 222
MalI	GATC	4 cut(s)	162, 173, 189, 224
MboI	GATC	4 cut(s)	160, 171, 187, 222
MboII	GAAGA	3 cut(s)	170, 221, 251
MflI	RGATCY	1 cut(s)	160
MhlI	GDGCHC	2 cut(s)	11, 23
MluCI	AATT	3 cut(s)	212, 230, 283
MnlI	CCTC	5 cut(s)	211, 220, 273, 282, 285
MspI	CCGG	7 cut(s)	11, 57, 70, 101, 153, 175, 247
MspR9I	CCNGG	5 cut(s)	11, 12, 81, 97, 102
MvaI	CCWGG	2 cut(s)	81, 97
NciI	CCSGG	3 cut(s)	11, 12, 102
NdeII	GATC	4 cut(s)	160, 171, 187, 222
NlaIV	GGNNCC	2 cut(s)	15, 68
Psp6I	CCWGG	2 cut(s)	79, 95
PspGI	CCWGG	2 cut(s)	79, 95
PspN4I	GGNNCC	2 cut(s)	15, 68
PspPI	GGNCC	4 cut(s)	14, 67, 83, 120
PsuI	RGATCY	1 cut(s)	160
SalI	GTCGAC	1 cut(s)	295
Sau3AI	GATC	4 cut(s)	160, 171, 187, 222
Sau96I	GGNCC	4 cut(s)	14, 67, 83, 120
ScrFI	CCNGG	5 cut(s)	11, 12, 81, 97, 102
SduI	GDGCHC	2 cut(s)	11, 23
SetI	ASST	1 cut(s)	296
SinI	GGWCC	3 cut(s)	14, 67, 83
SmaI	CCCGGG	1 cut(s)	12
SmlI	CTYRAG	1 cut(s)	136
SmoI	CTYRAG	1 cut(s)	136
Sse9I	AATT	3 cut(s)	212, 230, 283
StyD4I	CCNGG	5 cut(s)	9, 10, 79, 95, 100
TaqI	TCGA	2 cut(s)	225, 296
TaqII	GACCGA	3 cut(s)	27, 31, 100
TasI	AATT	3 cut(s)	212, 230, 283
TspDTI	ATGAA	2 cut(s)	62, 212
TspMI	CCCGGG	1 cut(s)	10
VpaK11BI	GGWCC	3 cut(s)	14, 67, 83
XapI	RAATTY	3 cut(s)	212, 230, 283
XmaI	CCCGGG	1 cut(s)	10
XmiI	GTMKAC	1 cut(s)	296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.