Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008833

Physical Location & Seq

Genomic Coordinates Forward (+)

20212655 .. 20213402

Gene Structure 748 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ55969

Sequence Viewer

CDS Protein Promoter (2k)

Length: 222 bp

ATGGAACTGATTTGCCATTCTACTTGTTTATGTAAACACGGAGAAGTACAGTATTGTATTGGAGTACAACTTGATGGCAGTCAGCACATTGAGCCTCTGCATAACTCTATTCCTGAAGTTACAGTAAAAGAGAGTGAAAAACTGGTCAAAGAGACTGCAGTTAATGTTGATGAGGCAGCAAGAGAGAAATGGAAAGCGAACTTGCTGAAGAAAATGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007154 GO:0007165 GO:0007623 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009628 GO:0009637 GO:0009638 GO:0009657 GO:0009658 GO:0009785 GO:0009881 GO:0009882 GO:0009898 GO:0009902 GO:0009903 GO:0009904 GO:0009986 GO:0009987 GO:0010119 GO:0010155 GO:0010181 GO:0010359 GO:0010360 GO:0010361 GO:0010362 GO:0016020 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019750 GO:0022898 GO:0023052 GO:0030522 GO:0032409 GO:0032410 GO:0032412 GO:0032413 GO:0032553 GO:0032879 GO:0034762 GO:0034763 GO:0034765 GO:0034766 GO:0035556 GO:0036094 GO:0036211 GO:0038023 GO:0042802 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0043271 GO:0043412 GO:0044070 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046777 GO:0048037 GO:0048511 GO:0048519 GO:0050662 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051051 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051644 GO:0051649 GO:0051656 GO:0051667 GO:0051716 GO:0060089 GO:0065007 GO:0065009 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0097367 GO:0098552 GO:0098562 GO:0104004 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1903792 GO:1903959 GO:1903960 GO:1904062

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAS_9 Pkinase

Protein Analysis

73

Amino Acids

8.26

Weight (kDa)

6.04

Isoelectric Point (pI)

38.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008833)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g27651
rosa_chinensis	RchiOBHm_Chr1g0330501 RchiOBHm_Chr1g0341541 RchiOBHm_Chr3g0493181 RchiOBHm_Chr5g0068631 RchiOBHm_Chr7g0200611 RchiOBHm_Chr7g0235681 RchiOBHm_Chr7g0242661
rosa_multiflora	Rmu_sc0002539.1_g000024
rosa_roxburghii	Rroxscaffold_1G00071600 Rroxscaffold_3G00223660 Rroxscaffold_5G00346520 Rroxscaffold_5G00366050
rosa_rugosa	Rorug05G0582300
rosa_samantha	Rh3AG308700 Rh4BG032100 Rh5AG071000 Rh5AG405200 Rh5CG079900 Rh7AG127500 Rh7CG198000
rosa_wichuraiana	Rw1G003250 Rw5G028180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	135
AfaI	GTAC	2 cut(s)	48, 66
Alw26I	GTCTC	1 cut(s)	146
ApeKI	GCWGC	1 cut(s)	176
BbvI	GCAGC	1 cut(s)	188
BccI	CCATC	1 cut(s)	68
BcoDI	GTCTC	1 cut(s)	146
BfmI	CTRYAG	1 cut(s)	156
BisI	GCNGC	1 cut(s)	177
BlsI	GCNGC	1 cut(s)	178
Bse1I	ACTGG	1 cut(s)	147
BseNI	ACTGG	1 cut(s)	147
BseXI	GCAGC	1 cut(s)	188
BsmAI	GTCTC	1 cut(s)	146
BspMAI	CTGCAG	1 cut(s)	160
BsrI	ACTGG	1 cut(s)	147
Bst4CI	ACNGT	2 cut(s)	51, 124
BstMAI	GTCTC	1 cut(s)	146
BstMWI	GCNNNNNNNGC	1 cut(s)	91
BstSFI	CTRYAG	1 cut(s)	156
BstV1I	GCAGC	1 cut(s)	188
Csp6I	GTAC	2 cut(s)	47, 65
CviJI	RGCY	1 cut(s)	94
CviKI_1	RGCY	1 cut(s)	94
CviQI	GTAC	2 cut(s)	47, 65
Eco57I	CTGAAG	1 cut(s)	135
FaiI	YATR	2 cut(s)	31, 102
Fnu4HI	GCNGC	1 cut(s)	177
Fsp4HI	GCNGC	1 cut(s)	177
FspEI	CC	9 cut(s)	24, 29, 45, 60, 108, 126, 128, 158, 175
GluI	GCNGC	1 cut(s)	177
Hpy166II	GTNNAC	1 cut(s)	35
Hpy188III	TCNNGA	1 cut(s)	113
Hpy8I	GTNNAC	1 cut(s)	35
HpyCH4III	ACNGT	2 cut(s)	51, 124
HpyCH4V	TGCA	3 cut(s)	100, 158, 217
HpyF10VI	GCNNNNNNNGC	1 cut(s)	91
LpnPI	CCDG	2 cut(s)	126, 128
Lsp1109I	GCAGC	1 cut(s)	188
MaeIII	GTNAC	1 cut(s)	118
MboII	GAAGA	1 cut(s)	220
MnlI	CCTC	2 cut(s)	105, 166
MseI	TTAA	1 cut(s)	162
MwoI	GCNNNNNNNGC	1 cut(s)	91
PkrI	GCNGC	1 cut(s)	178
PstI	CTGCAG	1 cut(s)	160
RsaI	GTAC	2 cut(s)	48, 66
RsaNI	GTAC	2 cut(s)	47, 65
SaqAI	TTAA	1 cut(s)	162
SatI	GCNGC	1 cut(s)	177
SfcI	CTRYAG	1 cut(s)	156
SgeI	CNNG	7 cut(s)	36, 50, 83, 125, 155, 192, 214
TaaI	ACNGT	2 cut(s)	51, 124
TatI	WGTACW	2 cut(s)	46, 64
Tru1I	TTAA	1 cut(s)	162
Tru9I	TTAA	1 cut(s)	162
TseI	GCWGC	1 cut(s)	176
TspGWI	ACGGA	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.