FvH4_1g27700

Homeobox-leucine zipper protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0006882
Physical Location & Seq
Forward (+)
19328778 .. 19329509
732 bp
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UTR
Exon/CDS
Intron
FvH4_1g27700.t1

Sequence Viewer

Length: 444 bp
ATGGGTGAGATTGCGCATATTCCAACCGGAGCTCATCCAGGGAACTGTATTTCTATTATTCAGCCTTTTATACCGACAGAGAGTAATATGCTCATTTTGCAAGAAAGTTATATAGACCCTTTAGGGTCTATGATTATCTATGCTCCTATCGAGGTAGCTACTATCAATATCACAGTGGGTGGGGAGCTCAACTCTTCTCGCATTCCTATTCTTCCCTCGGGGTTCATTATCTCGGATGATGGTTGTCTTGGTACTGGAACTTCGAGTTACACAAACCCGAACAGGTCAGGTGGTTCACTCCTTACAGTGGCATTCCAGATATTGGTTCCCTTTTCCTCACATTCACAAATGCTGAACGTTGAGTCTATAGCAACCATCAATACTCTAATAAGTTTGACTGTTCAAAAAATAAAAGTTGCTCTCAATTGTGAAAACTTGGATTAA

Protein Analysis

148

Amino Acids

15.57

Weight (kDa)

4.62

Isoelectric Point (pI)

44.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDF2_C PF25797 2 - 143 6.5e-54 PDF2-like, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 15
AccB7I CCANNNNNTGG 1 cut(s) 322
AclI AACGTT 1 cut(s) 357
AfaI GTAC 1 cut(s) 253
AfiI CCNNNNNNNGG 2 cut(s) 307, 322
AgsI TTSAA 1 cut(s) 404
AjnI CCWGG 1 cut(s) 37
AluBI AGCT 3 cut(s) 32, 158, 187
AluI AGCT 3 cut(s) 32, 158, 187
Alw21I GWGCWC 2 cut(s) 34, 189
Ama87I CYCGRG 1 cut(s) 217
AspLEI GCGC 1 cut(s) 16
AsuHPI GGTGA 1 cut(s) 17
AvaI CYCGRG 1 cut(s) 217
BanII GRGCYC 2 cut(s) 34, 189
BarI GAAGNNNNNNTAC 2 cut(s) 244, 276
Bbv12I GWGCWC 2 cut(s) 34, 189
BccI CCATC 2 cut(s) 233, 383
BciT130I CCWGG 1 cut(s) 39
BfmI CTRYAG 1 cut(s) 366
Bme1390I CCNGG 1 cut(s) 39
BmeT110I CYCGRG 1 cut(s) 217
BmiI GGNNCC 1 cut(s) 327
BmrFI CCNGG 1 cut(s) 39
BplI GAGNNNNNCTC 2 cut(s) 176, 208
BsaJI CCNNGG 2 cut(s) 38, 216
BsaWI WCCGGW 1 cut(s) 26
Bsc4I CCNNNNNNNGG 2 cut(s) 307, 322
Bse1I ACTGG 1 cut(s) 259
BseBI CCWGG 1 cut(s) 39
BseDI CCNNGG 2 cut(s) 38, 216
BseGI GGATG 2 cut(s) 34, 241
BseLI CCNNNNNNNGG 2 cut(s) 307, 322
BseNI ACTGG 1 cut(s) 259
BsiHKAI GWGCWC 2 cut(s) 34, 189
BsiHKCI CYCGRG 1 cut(s) 217
BsiSI CCGG 1 cut(s) 27
BslI CCNNNNNNNGG 2 cut(s) 307, 322
BsmI GAATGC 2 cut(s) 201, 311
BsoBI CYCGRG 1 cut(s) 217
Bsp1286I GDGCHC 2 cut(s) 34, 189
BspLI GGNNCC 1 cut(s) 327
BsrI ACTGG 1 cut(s) 259
BssECI CCNNGG 2 cut(s) 38, 216
Bst2UI CCWGG 1 cut(s) 39
Bst4CI ACNGT 4 cut(s) 47, 175, 307, 400
Bst6I CTCTTC 1 cut(s) 199
BstF5I GGATG 2 cut(s) 34, 241
BstHHI GCGC 1 cut(s) 16
BstMWI GCNNNNNNNGC 1 cut(s) 97
BstNI CCWGG 1 cut(s) 39
BstSCI CCNGG 1 cut(s) 37
BstSFI CTRYAG 1 cut(s) 366
BtsCI GGATG 2 cut(s) 34, 241
BtsIMutI CAGTG 2 cut(s) 180, 312
CfoI GCGC 1 cut(s) 16
Csp6I GTAC 1 cut(s) 252
CviJI RGCY 4 cut(s) 32, 64, 158, 187
CviKI_1 RGCY 4 cut(s) 32, 64, 158, 187
CviQI GTAC 1 cut(s) 252
Eam1104I CTCTTC 1 cut(s) 199
EarI CTCTTC 1 cut(s) 199
Ecl136II GAGCTC 2 cut(s) 32, 187
Eco24I GRGCYC 2 cut(s) 34, 189
Eco53kI GAGCTC 2 cut(s) 32, 187
Eco88I CYCGRG 1 cut(s) 217
EcoICRI GAGCTC 2 cut(s) 32, 187
EcoRII CCWGG 1 cut(s) 37
EcoT38I GRGCYC 2 cut(s) 34, 189
FaiI YATR 8 cut(s) 18, 71, 89, 111, 113, 131, 141, 368
FokI GGATG 2 cut(s) 21, 248
FriOI GRGCYC 2 cut(s) 34, 189
FspI TGCGCA 1 cut(s) 15
GlaI GCGC 1 cut(s) 15
HapII CCGG 1 cut(s) 27
HhaI GCGC 1 cut(s) 16
Hin6I GCGC 1 cut(s) 14
HinP1I GCGC 1 cut(s) 14
HinfI GANTC 1 cut(s) 362
HpaII CCGG 1 cut(s) 27
HphI GGTGA 1 cut(s) 17
Hpy166II GTNNAC 1 cut(s) 296
Hpy188I TCNGA 1 cut(s) 235
Hpy188III TCNNGA 1 cut(s) 316
Hpy8I GTNNAC 1 cut(s) 296
HpyCH4III ACNGT 4 cut(s) 47, 175, 307, 400
HpyCH4IV ACGT 1 cut(s) 357
HpyCH4V TGCA 1 cut(s) 100
HpyF10VI GCNNNNNNNGC 1 cut(s) 97
HpySE526I ACGT 1 cut(s) 357
HspAI GCGC 1 cut(s) 14
LmnI GCTCC 3 cut(s) 29, 148, 184
LpnPI CCDG 7 cut(s) 24, 40, 51, 240, 268, 273, 329
MaeII ACGT 1 cut(s) 357
MaeIII GTNAC 1 cut(s) 266
MboII GAAGA 2 cut(s) 186, 203
MfeI CAATTG 1 cut(s) 424
MhlI GDGCHC 2 cut(s) 34, 189
MluCI AATT 1 cut(s) 424
MlyI GAGTC 1 cut(s) 371
MmeI TCCRAC 1 cut(s) 47
MnlI CCTC 3 cut(s) 145, 226, 346
MseI TTAA 1 cut(s) 442
MspI CCGG 1 cut(s) 27
MspR9I CCNGG 1 cut(s) 39
MunI CAATTG 1 cut(s) 424
Mva1269I GAATGC 2 cut(s) 201, 311
MvaI CCWGG 1 cut(s) 39
MwoI GCNNNNNNNGC 1 cut(s) 97
NlaIV GGNNCC 1 cut(s) 327
NsbI TGCGCA 1 cut(s) 15
PctI GAATGC 2 cut(s) 201, 311
PflMI CCANNNNNTGG 1 cut(s) 322
PleI GAGTC 1 cut(s) 370
PpsI GAGTC 1 cut(s) 370
Psp124BI GAGCTC 2 cut(s) 34, 189
Psp1406I AACGTT 1 cut(s) 357
Psp6I CCWGG 1 cut(s) 37
PspGI CCWGG 1 cut(s) 37
PspN4I GGNNCC 1 cut(s) 327
RsaI GTAC 1 cut(s) 253
RsaNI GTAC 1 cut(s) 252
SacI GAGCTC 2 cut(s) 34, 189
SaqAI TTAA 1 cut(s) 442
SchI GAGTC 1 cut(s) 371
ScrFI CCNGG 1 cut(s) 39
SduI GDGCHC 2 cut(s) 34, 189
SetI ASST 7 cut(s) 34, 156, 160, 189, 287, 292, 360
SfcI CTRYAG 1 cut(s) 366
Sse9I AATT 1 cut(s) 424
SstI GAGCTC 2 cut(s) 34, 189
StyD4I CCNGG 1 cut(s) 37
TaaI ACNGT 4 cut(s) 47, 175, 307, 400
TaiI ACGT 1 cut(s) 360
TaqI TCGA 2 cut(s) 150, 263
TasI AATT 1 cut(s) 424
Tru1I TTAA 1 cut(s) 442
Tru9I TTAA 1 cut(s) 442
TscAI CASTG 2 cut(s) 180, 312
TspDTI ATGAA 1 cut(s) 214
TspRI CASTG 2 cut(s) 180, 312
Van91I CCANNNNNTGG 1 cut(s) 322
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.