Rh3BG327400

Homeobox-leucine zipper protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0006882
Physical Location & Seq
Reverse (-)
34119670 .. 34122262
2593 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG327400.1

Sequence Viewer

Length: 1122 bp
ATGGACCTTCCAATGGGAAATGAAAATGAAAATGGTGGAGCCTCGGGTGATGAACAGGAAGCATCGAATTCTCGCAAGAGAGGGAAGACTTATCACCGCCACACCTCTCAGCAGATACAACATCTCGAAGCATTTTTCAAGAAATGCCCCCACCCGGACGACAACCAACGTCGTCAGTTGAGCAAGGAGTTACGGTTAGAGCCACAACAGATCAAGTTTTGGTTCCAAAACAAGAGGACTCAAACAAAGACTCAAACTGAGAGAGCAGACAACTCCACTCTTCGAGCGGAAAATAGTAGGATCCAGTGTGAGAACTATGCAATTAAAGAGGCTTTGAAGAATGTCATTTGTCCTGCTTGTGGAGGTCCTCCTTTTGGAGAGCAAGACCGGCAAAAGAGTTTGCAGAAACTTCACTTGGAGAATGCCCAATTGAAAGAAGAGCATGACAAAGTAGCCACCCTTCTTTCCAAGTTTATTGGGAAACCGCTATCTCAAATAGATTCGTTGACATATGCTGCTAGATCCTCGCTGGATGTATCACCAGGATTGTTAATAAACCAAGCAATGAGAAGTTCTGACCTTAGTCATGAATTTATTAATCCTACAATTAGTAACAATGCTGCGCTAGCTTATTACCAGGTAAATGCAATCCCTGAGACTGAAAAGACGACAGTCATGATAGAGACAGCGGCAAGTGCCATGGAAGAGTTAATTAGAATTTTGAGGATCAATGAGCCTATGTGGATCAAGTCCAACAGTGACGGGAGATATGTCCTTAACCATGAAAACTACGATAAGATATTTCCAAGGGCTTATCGCTTAAAAACCTCCAGTGCTCGTATAGAGTCCTCAAAAGATTCAGGAATTGCGAGCATTAGTGCACTACAATTGGTTGACACATTTTTAGATGCAAATAAGTGGGTAGACCTCTTTCCAACAATTGTGACGAAAGCTAAAACAATTGAAGTACTCCAAGCAGGAATGTTTGGGACCCAGAGTGGTTGCTTACAACGTACTGATGTATGGGCAAATGCACATTCTTTCACCACTGGTGCTTCCACGAGATTTCTACTTTCTCCGCTTTTGTCAGCAAATCGAAGTTGGCACATGGGTGATTGTTGA

Protein Analysis

373

Amino Acids

42.03

Weight (kDa)

8.42

Isoelectric Point (pI)

43.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 29 - 83 2e-17 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 287
AccI GTMKAC 1 cut(s) 924
AciI CCGC 5 cut(s) 97, 287, 485, 689, 1079
AclWI GGATC 5 cut(s) 295, 308, 516, 734, 752
AcsI RAATTY 3 cut(s) 67, 590, 717
AfaI GTAC 2 cut(s) 969, 1015
AfiI CCNNNNNNNGG 4 cut(s) 13, 154, 359, 374
AgsI TTSAA 4 cut(s) 139, 337, 433, 965
AjnI CCWGG 2 cut(s) 541, 636
AjuI GAANNNNNNNTTGG 2 cut(s) 398, 430
AleI CACNNNNGTG 1 cut(s) 1110
AluBI AGCT 2 cut(s) 629, 953
AluI AGCT 2 cut(s) 629, 953
Alw21I GWGCWC 2 cut(s) 838, 883
Alw26I GTCTC 2 cut(s) 650, 677
Alw44I GTGCAC 1 cut(s) 879
AlwI GGATC 5 cut(s) 295, 308, 516, 734, 752
Ama87I CYCGRG 1 cut(s) 43
ApaLI GTGCAC 1 cut(s) 879
ApeKI GCWGC 2 cut(s) 515, 620
ApoI RAATTY 3 cut(s) 67, 590, 717
AseI ATTAAT 1 cut(s) 597
AspLEI GCGC 1 cut(s) 625
AspS9I GGNCC 3 cut(s) 4, 365, 990
AsuC2I CCSGG 1 cut(s) 155
AsuHPI GGTGA 4 cut(s) 59, 86, 531, 1036
AsuNHI GCTAGC 1 cut(s) 625
AvaI CYCGRG 1 cut(s) 43
AvaII GGWCC 3 cut(s) 4, 365, 990
BaeGI GKGCMC 1 cut(s) 883
BamHI GGATCC 1 cut(s) 300
BarI GAAGNNNNNNTAC 2 cut(s) 444, 476
BauI CACGAG 1 cut(s) 1060
BbsI GAAGAC 1 cut(s) 92
Bbv12I GWGCWC 2 cut(s) 838, 883
BbvI GCAGC 2 cut(s) 502, 607
BciT130I CCWGG 2 cut(s) 543, 638
BcnI CCSGG 1 cut(s) 155
BcoDI GTCTC 2 cut(s) 650, 677
BfaI CTAG 2 cut(s) 519, 626
BisI GCNGC 3 cut(s) 516, 621, 690
BlsI GCNGC 3 cut(s) 517, 622, 691
BmcAI AGTACT 1 cut(s) 969
Bme1390I CCNGG 3 cut(s) 155, 543, 638
Bme18I GGWCC 3 cut(s) 4, 365, 990
BmeT110I CYCGRG 1 cut(s) 43
BmgT120I GGNCC 3 cut(s) 4, 365, 990
BmiI GGNNCC 5 cut(s) 40, 224, 302, 991, 992
BmrFI CCNGG 3 cut(s) 155, 543, 638
BmsI GCATC 2 cut(s) 71, 898
BmtI GCTAGC 1 cut(s) 629
BoxI GACNNNNGTC 2 cut(s) 582, 671
BpiI GAAGAC 1 cut(s) 92
BpmI CTGGAG 1 cut(s) 814
BpuMI CCSGG 1 cut(s) 155
BsaJI CCNNGG 3 cut(s) 42, 699, 806
BsaXI ACNNNNNCTCC 2 cut(s) 179, 209
Bsc4I CCNNNNNNNGG 4 cut(s) 13, 154, 359, 374
Bse118I RCCGGY 1 cut(s) 387
Bse1I ACTGG 3 cut(s) 304, 831, 1054
Bse3DI GCAATG 1 cut(s) 570
BseBI CCWGG 2 cut(s) 543, 638
BseDI CCNNGG 3 cut(s) 42, 699, 806
BseGI GGATG 1 cut(s) 538
BseLI CCNNNNNNNGG 4 cut(s) 13, 154, 359, 374
BseMI GCAATG 1 cut(s) 570
BseMII CTCAG 3 cut(s) 122, 249, 645
BseNI ACTGG 3 cut(s) 304, 831, 1054
BseSI GKGCMC 1 cut(s) 883
BseXI GCAGC 2 cut(s) 502, 607
BsiHKAI GWGCWC 2 cut(s) 838, 883
BsiHKCI CYCGRG 1 cut(s) 43
BsiSI CCGG 2 cut(s) 155, 388
BslFI GGGAC 1 cut(s) 1003
BslI CCNNNNNNNGG 4 cut(s) 13, 154, 359, 374
BsmAI GTCTC 2 cut(s) 650, 677
BsmFI GGGAC 1 cut(s) 1003
BsmI GAATGC 1 cut(s) 427
BsoBI CYCGRG 1 cut(s) 43
Bsp1286I GDGCHC 2 cut(s) 838, 883
Bsp143I GATC 5 cut(s) 210, 300, 521, 726, 744
Bsp19I CCATGG 1 cut(s) 699
BspACI CCGC 5 cut(s) 97, 287, 485, 689, 1079
BspCNI CTCAG 3 cut(s) 121, 250, 646
BspHI TCATGA 2 cut(s) 586, 675
BspLI GGNNCC 5 cut(s) 40, 224, 302, 991, 992
BspOI GCTAGC 1 cut(s) 629
BspPI GGATC 5 cut(s) 295, 308, 516, 734, 752
BspQI GCTCTTC 1 cut(s) 432
BsrBI CCGCTC 1 cut(s) 287
BsrDI GCAATG 1 cut(s) 570
BsrFI RCCGGY 1 cut(s) 387
BsrI ACTGG 3 cut(s) 304, 831, 1054
BssAI RCCGGY 1 cut(s) 387
BssECI CCNNGG 3 cut(s) 42, 699, 806
BssMI GATC 5 cut(s) 210, 300, 521, 726, 744
BssSI CACGAG 1 cut(s) 1060
BssT1I CCWWGG 2 cut(s) 699, 806
Bst2BI CACGAG 1 cut(s) 1060
Bst2UI CCWGG 2 cut(s) 543, 638
Bst4CI ACNGT 3 cut(s) 195, 673, 758
Bst6I CTCTTC 3 cut(s) 285, 432, 699
BstC8I GCNNGC 2 cut(s) 627, 871
BstDEI CTNAG 4 cut(s) 108, 258, 581, 654
BstDSI CCRYGG 1 cut(s) 699
BstF5I GGATG 1 cut(s) 538
BstHHI GCGC 1 cut(s) 625
BstKTI GATC 5 cut(s) 213, 303, 524, 729, 747
BstMAI GTCTC 2 cut(s) 650, 677
BstMBI GATC 5 cut(s) 210, 300, 521, 726, 744
BstMWI GCNNNNNNNGC 3 cut(s) 388, 626, 695
BstNI CCWGG 2 cut(s) 543, 638
BstPAI GACNNNNGTC 2 cut(s) 582, 671
BstSCI CCNGG 3 cut(s) 153, 541, 636
BstSLI GKGCMC 1 cut(s) 883
BstV1I GCAGC 2 cut(s) 502, 607
BstV2I GAAGAC 1 cut(s) 92
BstX2I RGATCY 2 cut(s) 300, 521
BstYI RGATCY 2 cut(s) 300, 521
BtgI CCRYGG 1 cut(s) 699
BtsCI GGATG 1 cut(s) 538
BtsIMutI CAGTG 4 cut(s) 311, 763, 838, 1047
Cac8I GCNNGC 2 cut(s) 627, 871
CciI TCATGA 2 cut(s) 586, 675
CfoI GCGC 1 cut(s) 625
Cfr10I RCCGGY 1 cut(s) 387
Cfr13I GGNCC 3 cut(s) 4, 365, 990
CsiI ACCWGGT 1 cut(s) 636
Csp6I GTAC 2 cut(s) 968, 1014
CviAII CATG 6 cut(s) 443, 587, 676, 700, 782, 1108
CviJI RGCY 8 cut(s) 41, 202, 332, 455, 629, 736, 812, 953
CviKI_1 RGCY 8 cut(s) 41, 202, 332, 455, 629, 736, 812, 953
CviQI GTAC 2 cut(s) 968, 1014
DdeI CTNAG 4 cut(s) 108, 258, 581, 654
DpnI GATC 5 cut(s) 212, 302, 523, 728, 746
DpnII GATC 5 cut(s) 210, 300, 521, 726, 744
Eam1104I CTCTTC 3 cut(s) 285, 432, 699
EarI CTCTTC 3 cut(s) 285, 432, 699
Eco130I CCWWGG 2 cut(s) 699, 806
Eco47I GGWCC 3 cut(s) 4, 365, 990
Eco88I CYCGRG 1 cut(s) 43
EcoO109I RGGNCCY 2 cut(s) 365, 990
EcoRI GAATTC 1 cut(s) 67
EcoRII CCWGG 2 cut(s) 541, 636
EcoT14I CCWWGG 2 cut(s) 699, 806
ErhI CCWWGG 2 cut(s) 699, 806
FaeI CATG 6 cut(s) 446, 590, 679, 703, 785, 1111
FaqI GGGAC 1 cut(s) 1003
FatI CATG 6 cut(s) 442, 586, 675, 699, 781, 1107
FauNDI CATATG 1 cut(s) 511
FblI GTMKAC 1 cut(s) 924
Fnu4HI GCNGC 3 cut(s) 516, 621, 690
FokI GGATG 1 cut(s) 545
Fsp4HI GCNGC 3 cut(s) 516, 621, 690
FspBI CTAG 2 cut(s) 519, 626
GlaI GCGC 1 cut(s) 624
GluI GCNGC 3 cut(s) 516, 621, 690
GsuI CTGGAG 1 cut(s) 814
HapII CCGG 2 cut(s) 155, 388
HhaI GCGC 1 cut(s) 625
Hin1II CATG 6 cut(s) 446, 590, 679, 703, 785, 1111
Hin6I GCGC 1 cut(s) 623
HinP1I GCGC 1 cut(s) 623
HincII GTYRAC 2 cut(s) 507, 895
HindII GTYRAC 2 cut(s) 507, 895
HinfI GANTC 5 cut(s) 238, 250, 500, 845, 857
HpaII CCGG 2 cut(s) 155, 388
HphI GGTGA 4 cut(s) 59, 86, 531, 1036
Hpy166II GTNNAC 4 cut(s) 507, 881, 895, 925
Hpy188I TCNGA 1 cut(s) 577
Hpy188III TCNNGA 5 cut(s) 125, 139, 587, 676, 861
Hpy8I GTNNAC 4 cut(s) 507, 881, 895, 925
Hpy99I CGWCG 1 cut(s) 174
HpyAV CCTTC 2 cut(s) 17, 470
HpyCH4III ACNGT 3 cut(s) 195, 673, 758
HpyCH4IV ACGT 2 cut(s) 169, 1012
HpyCH4V TGCA 6 cut(s) 320, 403, 647, 881, 911, 1034
HpyF10VI GCNNNNNNNGC 3 cut(s) 388, 626, 695
HpyF3I CTNAG 4 cut(s) 108, 258, 581, 654
HpySE526I ACGT 2 cut(s) 169, 1012
Hsp92II CATG 6 cut(s) 446, 590, 679, 703, 785, 1111
HspAI GCGC 1 cut(s) 623
KflI GGGWCCC 1 cut(s) 990
Kzo9I GATC 5 cut(s) 210, 300, 521, 726, 744
LguI GCTCTTC 1 cut(s) 432
LmnI GCTCC 1 cut(s) 38
Lsp1109I GCAGC 2 cut(s) 502, 607
LweI GCATC 2 cut(s) 71, 898
MabI ACCWGGT 1 cut(s) 636
MaeI CTAG 2 cut(s) 519, 626
MaeII ACGT 2 cut(s) 169, 1012
MaeIII GTNAC 4 cut(s) 189, 611, 758, 943
MalI GATC 5 cut(s) 212, 302, 523, 728, 746
MbiI CCGCTC 1 cut(s) 287
MboI GATC 5 cut(s) 210, 300, 521, 726, 744
MboII GAAGA 5 cut(s) 97, 272, 349, 449, 716
MfeI CAATTG 4 cut(s) 428, 887, 939, 960
MflI RGATCY 2 cut(s) 300, 521
MhlI GDGCHC 2 cut(s) 838, 883
MlyI GAGTC 3 cut(s) 232, 244, 854
MmeI TCCRAC 2 cut(s) 777, 959
MseI TTAA 6 cut(s) 324, 551, 597, 710, 777, 821
MslI CAYNNNNRTG 1 cut(s) 1110
MspA1I CMGCKG 1 cut(s) 689
MspI CCGG 2 cut(s) 155, 388
MspR9I CCNGG 3 cut(s) 155, 543, 638
MunI CAATTG 4 cut(s) 428, 887, 939, 960
Mva1269I GAATGC 1 cut(s) 427
MvaI CCWGG 2 cut(s) 543, 638
MwoI GCNNNNNNNGC 3 cut(s) 388, 626, 695
NciI CCSGG 1 cut(s) 155
NcoI CCATGG 1 cut(s) 699
NdeI CATATG 1 cut(s) 511
NdeII GATC 5 cut(s) 210, 300, 521, 726, 744
NheI GCTAGC 1 cut(s) 625
NlaIII CATG 6 cut(s) 446, 590, 679, 703, 785, 1111
NlaIV GGNNCC 5 cut(s) 40, 224, 302, 991, 992
NmuCI GTSAC 2 cut(s) 758, 943
OliI CACNNNNGTG 1 cut(s) 1110
PagI TCATGA 2 cut(s) 586, 675
PciSI GCTCTTC 1 cut(s) 432
PctI GAATGC 1 cut(s) 427
PfeI GAWTC 2 cut(s) 500, 857
PkrI GCNGC 3 cut(s) 517, 622, 691
PleI GAGTC 3 cut(s) 232, 244, 853
PpsI GAGTC 3 cut(s) 232, 244, 853
PpuMI RGGWCCY 2 cut(s) 365, 990
PshAI GACNNNNGTC 2 cut(s) 582, 671
PshBI ATTAAT 1 cut(s) 597
Psp5II RGGWCCY 2 cut(s) 365, 990
Psp6I CCWGG 2 cut(s) 541, 636
PspGI CCWGG 2 cut(s) 541, 636
PspN4I GGNNCC 5 cut(s) 40, 224, 302, 991, 992
PspPI GGNCC 3 cut(s) 4, 365, 990
PspPPI RGGWCCY 2 cut(s) 365, 990
PsuI RGATCY 2 cut(s) 300, 521
RsaI GTAC 2 cut(s) 969, 1015
RsaNI GTAC 2 cut(s) 968, 1014
RseI CAYNNNNRTG 1 cut(s) 1110
SapI GCTCTTC 1 cut(s) 432
SaqAI TTAA 6 cut(s) 324, 551, 597, 710, 777, 821
SatI GCNGC 3 cut(s) 516, 621, 690
Sau3AI GATC 5 cut(s) 210, 300, 521, 726, 744
Sau96I GGNCC 3 cut(s) 4, 365, 990
ScaI AGTACT 1 cut(s) 969
SchI GAGTC 3 cut(s) 232, 244, 854
ScrFI CCNGG 3 cut(s) 155, 543, 638
SduI GDGCHC 2 cut(s) 838, 883
SexAI ACCWGGT 1 cut(s) 636
SfaNI GCATC 2 cut(s) 71, 898
SinI GGWCC 3 cut(s) 4, 365, 990
SmiMI CAYNNNNRTG 1 cut(s) 1110
SsiI CCGC 5 cut(s) 97, 287, 485, 689, 1079
SspMI CTAG 2 cut(s) 519, 626
StyD4I CCNGG 3 cut(s) 153, 541, 636
StyI CCWWGG 2 cut(s) 699, 806
TaaI ACNGT 3 cut(s) 195, 673, 758
TaiI ACGT 2 cut(s) 172, 1015
TaqI TCGA 4 cut(s) 65, 126, 283, 1096
TatI WGTACW 1 cut(s) 967
TauI GCSGC 1 cut(s) 692
TfiI GAWTC 2 cut(s) 500, 857
Tru1I TTAA 6 cut(s) 324, 551, 597, 710, 777, 821
Tru9I TTAA 6 cut(s) 324, 551, 597, 710, 777, 821
TscAI CASTG 4 cut(s) 311, 763, 838, 1054
TseFI GTSAC 2 cut(s) 758, 943
TseI GCWGC 2 cut(s) 515, 620
Tsp45I GTSAC 2 cut(s) 758, 943
TspDTI ATGAA 5 cut(s) 36, 42, 66, 603, 798
TspRI CASTG 4 cut(s) 311, 763, 838, 1054
VneI GTGCAC 1 cut(s) 879
VpaK11BI GGWCC 3 cut(s) 4, 365, 990
VspI ATTAAT 1 cut(s) 597
XapI RAATTY 3 cut(s) 67, 590, 717
XmiI GTMKAC 1 cut(s) 924
XspI CTAG 2 cut(s) 519, 626
ZrmI AGTACT 1 cut(s) 969
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.