Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0006882

Physical Location & Seq

Genomic Coordinates Forward (+)

19470110 .. 19472433

Gene Structure 2324 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g18710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1443 bp

ATGGAAAAGGCACTCATGAAAGACATTGCAGCCAGTGCCATGGAAGAACTGATCAAGCTTTTCCAGATCAACAAGCCTGTGTGGATGAAATCCCCAACTGATGGCAGATATCTCCTCAACCGGGACAACTACGATAAGATGTTCCCAAAAGCCAATCACTTCAGAAACTCTTGTGCTCGTGTCGAGTCTTCAAAGGATTCAGGAGTAGTGCACATTAGTGCAGCATACTTGGTTGACATGTTTTTAGATTTCAATAAATGGGAAGACCTCTTTCCTACAATCATAACAAAAGCAAGGACAATTGAAGTTCTCGAAAGTGGAATGATAGGAAATCGGAGTGGTTGCCTGCAGTTGATGTATGAAGAAATGCACATTCTCTCACCTTTGGTACTGCCGCGGGATTTCTACTTTCTTCGCCATTGTCAGCAAATTGAGCTAGGAACTTGGGTCATCGCTGATGTCTCCTATAACTTCACAAAAGGAAGTTTTGTGAGACAGCCTCAATCTTGGAGGCTACCTTCTGGATGCATGATAGAAGACATGCATAACGGATACTCCAAGATTACTTGGATTGAGCATATGGCGGTTGACGAAAAGACACAAACTCATCGGCTCTATAGAGATCTAATTTGTAGTAGTCTTGCATATGGAGCTGAGAGATGGATTGTTACTCTTCAAAAGATGTGTGAGAGATTCCATTGTTTAATGAACGGTTGTGTGTTTGGAGGAGTGGTTACTTTGCCTGAAGGCAAGAGAAGCTTAATGAAGCTTTCCCAGAGGATGGTGAAGAACTTTTGTGGAATGTTGAGCATGGCGGGAAATCTTGACTTCCCCCAATTGTCAGAAGTTGTCGATACTGGGATTCAAGTCTCTGTTCATACAAGCACAGAAATAGGACAACCGCATGGCATGATCGTCAGTGTTGCTACTTCTCTCTGGTTTCCTTTGTCGACGCAAACGATCCTTAACTTCTTCAAAGATGAGAAAACAAGAGTTCAGTGGGATGTTCTCTCTAATGGAAATCCAGTGCATGAGATTGCCTACATTTCAACAGGAACTCATCCCGAAAATCGTATATCCATCATTCGGCCTTTCACCCCGACGGAGGACAACATGTTGATTCTTCAAGAGTGCTACATAGACCCTCTTGGATCCTTTATCATATATGCTCCGGTTGACTTGCAAATTCTCAATGTAGCAGTAAGTGGTGAAGACTCTTCTAACATGTCCATACTCCCATCGGGGTTTATGATATCCCGCGATGGTCGTCCTGAAATGGGGGGTCCATGTGGTTCTCTTCTTACAGTGGCTTTCCACATATTGGTTTCCAGCCCCACAACTTCAAAGCAGATGAACACGGAGTTAGTGGCAACTGTCAATACTCTTATCAGTTCCAACGTTGAAAAAATAAAAGTTGCCCTCAACTGTTCTGGCTTGGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox START

Protein Analysis

481

Amino Acids

54.04

Weight (kDa)

6.03

Isoelectric Point (pI)

51.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
START	PF01852	9 - 231	5.3e-31	START domain
PDF2_C	PF25797	248 - 476	2.9e-94	PDF2-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006882)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03260 AT3G03260
fragaria_vesca	FvH4_1g27700
malus_domestica	MD09G1277500.v1.1 MD09G1277600.v1.1 MD09G1277900.v1.1 MD17G1271000.v1.1 MD17G1271100.v1.1
prunus_persica	Prupe.3G015300_v2.0.a1
pyrus_communis	pycom09g18690 pycom09g18700 pycom09g18710 pycom17g26940
rosa_chinensis	RchiOBHm_Chr3g0488861
rosa_laevigata	RLG00000022916
rosa_multiflora	Rmu_sc0001208.1_g000028
rosa_roxburghii	Rroxscaffold_6G00393800 Rroxscaffold_6G00393810
rosa_rugosa	Rorug03G0242100 Rorug03G0242200
rosa_samantha	Rh3AG290200 Rh3BG327300 Rh3BG327400 Rh3CG324700 Rh3DG323300
rosa_wichuraiana	Rw3G025720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	3 cut(s)	101, 781, 1321
AccI	GTMKAC	1 cut(s)	950
AccII	CGCG	2 cut(s)	397, 1260
AciI	CCGC	6 cut(s)	395, 397, 584, 815, 902, 1258
AclI	AACGTT	1 cut(s)	1398
AclWI	GGATC	3 cut(s)	955, 1146, 1159
AcsI	RAATTY	1 cut(s)	1185
AcuI	CTGAAG	2 cut(s)	145, 765
AfaI	GTAC	1 cut(s)	390
AfiI	CCNNNNNNNGG	7 cut(s)	101, 121, 781, 1086, 1105, 1277, 1321
AflIII	ACRYGT	3 cut(s)	237, 1113, 1224
AleI	CACNNNNGTG	1 cut(s)	216
AluBI	AGCT	5 cut(s)	58, 436, 653, 759, 769
AluI	AGCT	5 cut(s)	58, 436, 653, 759, 769
Alw21I	GWGCWC	2 cut(s)	178, 213
Alw26I	GTCTC	3 cut(s)	466, 487, 874
Alw44I	GTGCAC	1 cut(s)	209
AlwI	GGATC	3 cut(s)	955, 1146, 1159
AoxI	GGCC	1 cut(s)	1088
ApaLI	GTGCAC	1 cut(s)	209
ApeKI	GCWGC	2 cut(s)	29, 221
ApoI	RAATTY	1 cut(s)	1185
AspS9I	GGNCC	1 cut(s)	1283
AsuC2I	CCSGG	1 cut(s)	122
AsuHPI	GGTGA	4 cut(s)	372, 796, 1087, 1220
AvaII	GGWCC	1 cut(s)	1283
BaeGI	GKGCMC	1 cut(s)	213
BamHI	GGATCC	1 cut(s)	1151
BauI	CACGAG	1 cut(s)	177
BbsI	GAAGAC	4 cut(s)	180, 270, 543, 1218
Bbv12I	GWGCWC	2 cut(s)	178, 213
BbvI	GCAGC	2 cut(s)	41, 233
BccI	CCATC	6 cut(s)	95, 654, 775, 1088, 1246, 1256
BciVI	GTATCC	1 cut(s)	545
BclI	TGATCA	1 cut(s)	51
BcnI	CCSGG	1 cut(s)	122
BcoDI	GTCTC	3 cut(s)	466, 487, 874
BfaI	CTAG	1 cut(s)	437
BfmI	CTRYAG	2 cut(s)	347, 616
BfuI	GTATCC	1 cut(s)	545
BglII	AGATCT	1 cut(s)	622
BisI	GCNGC	3 cut(s)	30, 222, 395
BlsI	GCNGC	3 cut(s)	31, 223, 396
Bme1390I	CCNGG	1 cut(s)	122
Bme18I	GGWCC	1 cut(s)	1283
BmgT120I	GGNCC	1 cut(s)	1283
BmiI	GGNNCC	2 cut(s)	1153, 1284
BmrFI	CCNGG	1 cut(s)	122
BmrI	ACTGGG	1 cut(s)	867
BmsI	GCATC	1 cut(s)	515
BmuI	ACTGGG	1 cut(s)	867
BpiI	GAAGAC	4 cut(s)	180, 270, 543, 1218
BplI	GAGNNNNNCTC	2 cut(s)	484, 516
BpuMI	CCSGG	1 cut(s)	122
BsaJI	CCNNGG	2 cut(s)	39, 395
BsaWI	WCCGGW	1 cut(s)	1171
BsaXI	ACNNNNNCTCC	4 cut(s)	539, 569, 717, 747
Bsc4I	CCNNNNNNNGG	7 cut(s)	101, 121, 781, 1086, 1105, 1277, 1321
Bse1I	ACTGG	3 cut(s)	33, 862, 1025
Bse3DI	GCAATG	1 cut(s)	24
BseDI	CCNNGG	2 cut(s)	39, 395
BseGI	GGATG	5 cut(s)	90, 530, 786, 1009, 1060
BseLI	CCNNNNNNNGG	7 cut(s)	101, 121, 781, 1086, 1105, 1277, 1321
BseMI	GCAATG	1 cut(s)	24
BseMII	CTCAG	1 cut(s)	645
BseNI	ACTGG	3 cut(s)	33, 862, 1025
BseRI	GAGGAG	2 cut(s)	104, 741
BseSI	GKGCMC	1 cut(s)	213
BseXI	GCAGC	2 cut(s)	41, 233
BsgI	GTGCAG	1 cut(s)	240
Bsh1236I	CGCG	2 cut(s)	397, 1260
BshFI	GGCC	1 cut(s)	1090
BsiHKAI	GWGCWC	2 cut(s)	178, 213
BsiSI	CCGG	2 cut(s)	121, 1172
BslFI	GGGAC	1 cut(s)	137
BslI	CCNNNNNNNGG	7 cut(s)	101, 121, 781, 1086, 1105, 1277, 1321
BsmAI	GTCTC	3 cut(s)	466, 487, 874
BsmFI	GGGAC	1 cut(s)	137
BsnI	GGCC	1 cut(s)	1090
Bsp1286I	GDGCHC	2 cut(s)	178, 213
Bsp143I	GATC	6 cut(s)	51, 66, 622, 912, 960, 1151
Bsp19I	CCATGG	1 cut(s)	39
BspACI	CCGC	6 cut(s)	395, 397, 584, 815, 902, 1258
BspANI	GGCC	1 cut(s)	1090
BspCNI	CTCAG	1 cut(s)	646
BspFNI	CGCG	2 cut(s)	397, 1260
BspHI	TCATGA	1 cut(s)	15
BspLI	GGNNCC	2 cut(s)	1153, 1284
BspMAI	CTGCAG	1 cut(s)	351
BspPI	GGATC	3 cut(s)	955, 1146, 1159
BsrDI	GCAATG	1 cut(s)	24
BsrI	ACTGG	3 cut(s)	33, 862, 1025
BssECI	CCNNGG	2 cut(s)	39, 395
BssMI	GATC	6 cut(s)	51, 66, 622, 912, 960, 1151
BssSI	CACGAG	1 cut(s)	177
BssT1I	CCWWGG	1 cut(s)	39
Bst2BI	CACGAG	1 cut(s)	177
Bst4CI	ACNGT	4 cut(s)	713, 1306, 1375, 1427
Bst6I	CTCTTC	3 cut(s)	678, 1222, 1302
BstAPI	GCANNNNNTGC	1 cut(s)	35
BstC8I	GCNNGC	1 cut(s)	347
BstDEI	CTNAG	1 cut(s)	654
BstDSI	CCRYGG	2 cut(s)	39, 395
BstF5I	GGATG	5 cut(s)	90, 530, 786, 1009, 1060
BstFNI	CGCG	2 cut(s)	397, 1260
BstKTI	GATC	6 cut(s)	54, 69, 625, 915, 963, 1154
BstMAI	GTCTC	3 cut(s)	466, 487, 874
BstMBI	GATC	6 cut(s)	51, 66, 622, 912, 960, 1151
BstMWI	GCNNNNNNNGC	4 cut(s)	35, 433, 650, 756
BstNSI	RCATGY	4 cut(s)	241, 544, 1117, 1228
BstSCI	CCNGG	1 cut(s)	120
BstSFI	CTRYAG	2 cut(s)	347, 616
BstSLI	GKGCMC	1 cut(s)	213
BstUI	CGCG	2 cut(s)	397, 1260
BstV1I	GCAGC	2 cut(s)	41, 233
BstV2I	GAAGAC	4 cut(s)	180, 270, 543, 1218
BstX2I	RGATCY	2 cut(s)	622, 1151
BstXI	CCANNNNNNTGG	1 cut(s)	40
BstYI	RGATCY	2 cut(s)	622, 1151
BsuI	GTATCC	1 cut(s)	545
BsuRI	GGCC	1 cut(s)	1090
BtgI	CCRYGG	2 cut(s)	39, 395
BtgZI	GCGATG	2 cut(s)	436, 1275
BtsCI	GGATG	5 cut(s)	90, 530, 786, 1009, 1060
BtsIMutI	CAGTG	5 cut(s)	40, 925, 1004, 1032, 1311
Cac8I	GCNNGC	1 cut(s)	347
CciI	TCATGA	1 cut(s)	15
Cfr13I	GGNCC	1 cut(s)	1283
Cfr42I	CCGCGG	1 cut(s)	398
CseI	GACGC	1 cut(s)	961
Csp6I	GTAC	1 cut(s)	389
CviQI	GTAC	1 cut(s)	389
DdeI	CTNAG	1 cut(s)	654
DpnI	GATC	6 cut(s)	53, 68, 624, 914, 962, 1153
DpnII	GATC	6 cut(s)	51, 66, 622, 912, 960, 1151
Eam1104I	CTCTTC	3 cut(s)	678, 1222, 1302
EarI	CTCTTC	3 cut(s)	678, 1222, 1302
Eco130I	CCWWGG	1 cut(s)	39
Eco32I	GATATC	2 cut(s)	110, 1254
Eco47I	GGWCC	1 cut(s)	1283
Eco57I	CTGAAG	2 cut(s)	145, 765
EcoRV	GATATC	2 cut(s)	110, 1254
EcoT14I	CCWWGG	1 cut(s)	39
EcoT22I	ATGCAT	2 cut(s)	530, 546
ErhI	CCWWGG	1 cut(s)	39
FalI	AAGNNNNNCTT	2 cut(s)	743, 775
FaqI	GGGAC	1 cut(s)	137
FauI	CCCGC	3 cut(s)	390, 808, 1265
FauNDI	CATATG	2 cut(s)	579, 646
FbaI	TGATCA	1 cut(s)	51
FblI	GTMKAC	1 cut(s)	950
Fnu4HI	GCNGC	3 cut(s)	30, 222, 395
FokI	GGATG	5 cut(s)	97, 537, 793, 1016, 1047
Fsp4HI	GCNGC	3 cut(s)	30, 222, 395
FspBI	CTAG	1 cut(s)	437
GluI	GCNGC	3 cut(s)	30, 222, 395
HaeIII	GGCC	1 cut(s)	1090
HapII	CCGG	2 cut(s)	121, 1172
HgaI	GACGC	1 cut(s)	961
HincII	GTYRAC	4 cut(s)	235, 589, 951, 1177
HindII	GTYRAC	4 cut(s)	235, 589, 951, 1177
HindIII	AAGCTT	3 cut(s)	56, 757, 767
HinfI	GANTC	6 cut(s)	185, 197, 693, 862, 1120, 1214
HpaII	CCGG	2 cut(s)	121, 1172
HphI	GGTGA	4 cut(s)	372, 796, 1087, 1220
Hpy166II	GTNNAC	5 cut(s)	211, 235, 589, 951, 1177
Hpy188I	TCNGA	3 cut(s)	164, 336, 844
Hpy188III	TCNNGA	9 cut(s)	16, 64, 201, 311, 522, 824, 1064, 1127, 1271
Hpy8I	GTNNAC	5 cut(s)	211, 235, 589, 951, 1177
Hpy99I	CGWCG	2 cut(s)	955, 1105
HpyAV	CCTTC	2 cut(s)	528, 740
HpyCH4III	ACNGT	4 cut(s)	713, 1306, 1375, 1427
HpyCH4IV	ACGT	1 cut(s)	1398
HpyF10VI	GCNNNNNNNGC	4 cut(s)	35, 433, 650, 756
HpyF3I	CTNAG	1 cut(s)	654
HpySE526I	ACGT	1 cut(s)	1398
Ksp22I	TGATCA	1 cut(s)	51
KspI	CCGCGG	1 cut(s)	398
Kzo9I	GATC	6 cut(s)	51, 66, 622, 912, 960, 1151
LmnI	GCTCC	2 cut(s)	650, 1174
Lsp1109I	GCAGC	2 cut(s)	41, 233
LweI	GCATC	1 cut(s)	515
MaeI	CTAG	1 cut(s)	437
MaeII	ACGT	1 cut(s)	1398
MaeIII	GTNAC	2 cut(s)	667, 733
MalI	GATC	6 cut(s)	53, 68, 624, 914, 962, 1153
MboI	GATC	6 cut(s)	51, 66, 622, 912, 960, 1151
MfeI	CAATTG	2 cut(s)	300, 836
MflI	RGATCY	2 cut(s)	622, 1151
MhlI	GDGCHC	2 cut(s)	178, 213
MluCI	AATT	5 cut(s)	300, 429, 627, 836, 1185
MlyI	GAGTC	2 cut(s)	194, 1208
MmeI	TCCRAC	1 cut(s)	1419
MnlI	CCTC	9 cut(s)	125, 278, 504, 510, 719, 771, 1099, 1155, 1430
Mph1103I	ATGCAT	2 cut(s)	530, 546
MseI	TTAA	3 cut(s)	704, 761, 966
MslI	CAYNNNNRTG	1 cut(s)	216
MspA1I	CMGCKG	1 cut(s)	397
MspI	CCGG	2 cut(s)	121, 1172
MspR9I	CCNGG	1 cut(s)	122
MunI	CAATTG	2 cut(s)	300, 836
MvnI	CGCG	2 cut(s)	397, 1260
MwoI	GCNNNNNNNGC	4 cut(s)	35, 433, 650, 756
NciI	CCSGG	1 cut(s)	122
NcoI	CCATGG	1 cut(s)	39
NdeI	CATATG	2 cut(s)	579, 646
NdeII	GATC	6 cut(s)	51, 66, 622, 912, 960, 1151
NlaIV	GGNNCC	2 cut(s)	1153, 1284
NsiI	ATGCAT	2 cut(s)	530, 546
NspI	RCATGY	4 cut(s)	241, 544, 1117, 1228
OliI	CACNNNNGTG	1 cut(s)	216
PagI	TCATGA	1 cut(s)	15
PciI	ACATGT	3 cut(s)	237, 1113, 1224
PcsI	WCGNNNNNNNCGW	1 cut(s)	956
PfeI	GAWTC	4 cut(s)	197, 693, 862, 1120
PflMI	CCANNNNNTGG	3 cut(s)	101, 781, 1321
PkrI	GCNGC	3 cut(s)	31, 223, 396
PleI	GAGTC	2 cut(s)	193, 1208
PpsI	GAGTC	2 cut(s)	193, 1208
PscI	ACATGT	3 cut(s)	237, 1113, 1224
Psp1406I	AACGTT	1 cut(s)	1398
PspN4I	GGNNCC	2 cut(s)	1153, 1284
PspPI	GGNCC	1 cut(s)	1283
PstI	CTGCAG	1 cut(s)	351
PsuI	RGATCY	2 cut(s)	622, 1151
RsaI	GTAC	1 cut(s)	390
RsaNI	GTAC	1 cut(s)	389
RseI	CAYNNNNRTG	1 cut(s)	216
SacII	CCGCGG	1 cut(s)	398
SalI	GTCGAC	1 cut(s)	949
SaqAI	TTAA	3 cut(s)	704, 761, 966
SatI	GCNGC	3 cut(s)	30, 222, 395
Sau3AI	GATC	6 cut(s)	51, 66, 622, 912, 960, 1151
Sau96I	GGNCC	1 cut(s)	1283
SchI	GAGTC	2 cut(s)	194, 1208
ScrFI	CCNGG	1 cut(s)	122
SduI	GDGCHC	2 cut(s)	178, 213
SetI	ASST	9 cut(s)	60, 270, 385, 438, 520, 655, 761, 771, 1401
SfaNI	GCATC	1 cut(s)	515
SfcI	CTRYAG	2 cut(s)	347, 616
Sfr303I	CCGCGG	1 cut(s)	398
SgrBI	CCGCGG	1 cut(s)	398
SinI	GGWCC	1 cut(s)	1283
SmiMI	CAYNNNNRTG	1 cut(s)	216
Sse9I	AATT	5 cut(s)	300, 429, 627, 836, 1185
SsiI	CCGC	6 cut(s)	395, 397, 584, 815, 902, 1258
SspMI	CTAG	1 cut(s)	437
StyD4I	CCNGG	1 cut(s)	120
StyI	CCWWGG	1 cut(s)	39
TaaI	ACNGT	4 cut(s)	713, 1306, 1375, 1427
TaiI	ACGT	1 cut(s)	1401
TaqI	TCGA	4 cut(s)	183, 312, 852, 950
TasI	AATT	5 cut(s)	300, 429, 627, 836, 1185
TauI	GCSGC	1 cut(s)	397
TfiI	GAWTC	4 cut(s)	197, 693, 862, 1120
Tru1I	TTAA	3 cut(s)	704, 761, 966
Tru9I	TTAA	3 cut(s)	704, 761, 966
TscAI	CASTG	5 cut(s)	40, 925, 1004, 1032, 1311
TseI	GCWGC	2 cut(s)	29, 221
TspDTI	ATGAA	7 cut(s)	32, 101, 375, 722, 779, 866, 1367
TspGWI	ACGGA	3 cut(s)	564, 1118, 1373
TspRI	CASTG	5 cut(s)	40, 925, 1004, 1032, 1311
Van91I	CCANNNNNTGG	3 cut(s)	101, 781, 1321
VneI	GTGCAC	1 cut(s)	209
VpaK11BI	GGWCC	1 cut(s)	1283
XapI	RAATTY	1 cut(s)	1185
XceI	RCATGY	4 cut(s)	241, 544, 1117, 1228
XmiI	GTMKAC	1 cut(s)	950
XspI	CTAG	1 cut(s)	437
Zsp2I	ATGCAT	2 cut(s)	530, 546

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.