Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0006882

Physical Location & Seq

Genomic Coordinates Forward (+)

14012546 .. 14013768

Gene Structure 1223 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00393810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGCCCGAAGGCAGAAGTAGCATAATGAAGCTTTCCCACAGGATGGTTAAGAACTTTTGTGGAATGTTGAGCATGTCAGGAAAGCTTGATTTCCCTCAACTATCAGAAGTGAACAATAGCGGGGTTCGAGTCAATGTTCGTAAAAGCATAGAACCAGGCGAGCCCAGTGGCATGGTCGTCGTTGCTGCTACTTCTCTATGGCTTCCCCTACATTGCCAAGACGTCTTTAACTTCTTCACAAATGAAAAAACAAGAGTGCAGTGGGATGTCCTCTCTAACGGAAATCCAATGAATGTGATTGCACACATTCCAACTGGAGCTCATCCAGGAAACTGTATTTCTATTATTCAGCCTTTTGTACCGACAGAGGGTAATATGCTTCTTTTGCAAGAAAGTTATATAGACACTTTGGGGTCTATGGTTATCTATGCTCCTGTCGAGGTAGCTACCATCAATATAGCAGTCGGGGGTGAGGTTGACTCTTCTGACATTCCCATACTTCCCTCGGGGTTCGTAATCTCAGATGATGGTCGTCCTGATACTGGGACTTCGAGCAGCACAAACCCTGCCAGATCAGGTGGTTCACTCCTTACAGTGGCTTTCCAGACATTGGTCCCCTTCCCCTCACCTTCACAAGTGCTGAACGTTGAGTCCGTGGCAACTGTCAATACTCTTATTAGTTTGACTGTTCAAAAAATAAAAACCGCTCTCAATTGCGCTGGCTTGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox START

Protein Analysis

243

Amino Acids

25.88

Weight (kDa)

5.16

Isoelectric Point (pI)

42.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PDF2_C	PF25797	2 - 239	3.1e-102	PDF2-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0006882)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03260 AT3G03260
fragaria_vesca	FvH4_1g27700
malus_domestica	MD09G1277500.v1.1 MD09G1277600.v1.1 MD09G1277900.v1.1 MD17G1271000.v1.1 MD17G1271100.v1.1
prunus_persica	Prupe.3G015300_v2.0.a1
pyrus_communis	pycom09g18690 pycom09g18700 pycom09g18710 pycom17g26940
rosa_chinensis	RchiOBHm_Chr3g0488861
rosa_laevigata	RLG00000022916
rosa_multiflora	Rmu_sc0001208.1_g000028
rosa_roxburghii	Rroxscaffold_6G00393800 Rroxscaffold_6G00393810
rosa_rugosa	Rorug03G0242100 Rorug03G0242200
rosa_samantha	Rh3AG290200 Rh3BG327300 Rh3BG327400 Rh3CG324700 Rh3DG323300
rosa_wichuraiana	Rw3G025720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	225
AccB7I	CCANNNNNTGG	2 cut(s)	43, 610
AccBSI	CCGCTC	1 cut(s)	707
AciI	CCGC	2 cut(s)	120, 705
AclI	AACGTT	1 cut(s)	645
AcyI	GRCGYC	1 cut(s)	222
AfaI	GTAC	1 cut(s)	360
AfiI	CCNNNNNNNGG	5 cut(s)	43, 368, 542, 595, 610
AgsI	TTSAA	1 cut(s)	692
AjnI	CCWGG	2 cut(s)	154, 325
AloI	GAACNNNNNNTCC	2 cut(s)	635, 667
AluBI	AGCT	4 cut(s)	31, 85, 320, 446
AluI	AGCT	4 cut(s)	31, 85, 320, 446
Alw21I	GWGCWC	1 cut(s)	322
Ama87I	CYCGRG	1 cut(s)	505
ApeKI	GCWGC	2 cut(s)	185, 555
AspLEI	GCGC	1 cut(s)	719
AspS9I	GGNCC	1 cut(s)	613
AsuHPI	GGTGA	2 cut(s)	482, 618
AvaI	CYCGRG	1 cut(s)	505
AvaII	GGWCC	1 cut(s)	613
BanII	GRGCYC	2 cut(s)	165, 322
Bbv12I	GWGCWC	1 cut(s)	322
BbvI	GCAGC	2 cut(s)	172, 567
BccI	CCATC	3 cut(s)	37, 458, 521
BcgI	CGANNNNNNTGC	2 cut(s)	160, 194
BciT130I	CCWGG	2 cut(s)	156, 327
BisI	GCNGC	2 cut(s)	186, 556
BlsI	GCNGC	2 cut(s)	187, 557
Bme1390I	CCNGG	2 cut(s)	156, 327
Bme18I	GGWCC	1 cut(s)	613
BmeT110I	CYCGRG	1 cut(s)	505
BmgT120I	GGNCC	1 cut(s)	613
BmiI	GGNNCC	1 cut(s)	615
BmrFI	CCNGG	2 cut(s)	156, 327
BmrI	ACTGGG	2 cut(s)	159, 552
BmuI	ACTGGG	2 cut(s)	159, 552
BoxI	GACNNNNGTC	1 cut(s)	611
BplI	GAGNNNNNCTC	2 cut(s)	464, 496
BpmI	CTGGAG	1 cut(s)	336
BsaHI	GRCGYC	1 cut(s)	222
BsaJI	CCNNGG	2 cut(s)	504, 654
Bsc4I	CCNNNNNNNGG	5 cut(s)	43, 368, 542, 595, 610
Bse1I	ACTGG	3 cut(s)	165, 319, 547
Bse3DI	GCAATG	1 cut(s)	211
BseBI	CCWGG	2 cut(s)	156, 327
BseDI	CCNNGG	2 cut(s)	504, 654
BseGI	GGATG	3 cut(s)	48, 271, 322
BseLI	CCNNNNNNNGG	5 cut(s)	43, 368, 542, 595, 610
BseMI	GCAATG	1 cut(s)	211
BseMII	CTCAG	1 cut(s)	534
BseNI	ACTGG	3 cut(s)	165, 319, 547
BseXI	GCAGC	2 cut(s)	172, 567
BsgI	GTGCAG	1 cut(s)	278
BsiHKAI	GWGCWC	1 cut(s)	322
BsiHKCI	CYCGRG	1 cut(s)	505
BslFI	GGGAC	2 cut(s)	559, 599
BslI	CCNNNNNNNGG	5 cut(s)	43, 368, 542, 595, 610
BsmFI	GGGAC	2 cut(s)	559, 599
BsoBI	CYCGRG	1 cut(s)	505
Bsp1286I	GDGCHC	2 cut(s)	165, 322
Bsp143I	GATC	1 cut(s)	572
BspACI	CCGC	2 cut(s)	120, 705
BspCNI	CTCAG	1 cut(s)	533
BspLI	GGNNCC	1 cut(s)	615
BsrBI	CCGCTC	1 cut(s)	707
BsrDI	GCAATG	1 cut(s)	211
BsrI	ACTGG	3 cut(s)	165, 319, 547
BssECI	CCNNGG	2 cut(s)	504, 654
BssMI	GATC	1 cut(s)	572
BssNI	GRCGYC	1 cut(s)	222
Bst2UI	CCWGG	2 cut(s)	156, 327
Bst4CI	ACNGT	4 cut(s)	335, 595, 664, 688
Bst6I	CTCTTC	1 cut(s)	487
BstACI	GRCGYC	1 cut(s)	222
BstC8I	GCNNGC	2 cut(s)	161, 721
BstDEI	CTNAG	1 cut(s)	520
BstDSI	CCRYGG	1 cut(s)	654
BstF5I	GGATG	3 cut(s)	48, 271, 322
BstHHI	GCGC	1 cut(s)	719
BstKTI	GATC	1 cut(s)	575
BstMBI	GATC	1 cut(s)	572
BstMWI	GCNNNNNNNGC	2 cut(s)	18, 385
BstNI	CCWGG	2 cut(s)	156, 327
BstNSI	RCATGY	1 cut(s)	76
BstPAI	GACNNNNGTC	1 cut(s)	611
BstSCI	CCNGG	2 cut(s)	154, 325
BstV1I	GCAGC	2 cut(s)	172, 567
BstXI	CCANNNNNNTGG	1 cut(s)	172
BtgI	CCRYGG	1 cut(s)	654
BtsCI	GGATG	3 cut(s)	48, 271, 322
BtsI	GCAGTG	1 cut(s)	266
BtsIMutI	CAGTG	3 cut(s)	172, 266, 600
Cac8I	GCNNGC	2 cut(s)	161, 721
CfoI	GCGC	1 cut(s)	719
Cfr13I	GGNCC	1 cut(s)	613
Csp6I	GTAC	1 cut(s)	359
CviAII	CATG	2 cut(s)	73, 172
CviJI	RGCY	9 cut(s)	31, 85, 163, 202, 320, 352, 446, 599, 723
CviKI_1	RGCY	9 cut(s)	31, 85, 163, 202, 320, 352, 446, 599, 723
CviQI	GTAC	1 cut(s)	359
DdeI	CTNAG	1 cut(s)	520
DpnI	GATC	1 cut(s)	574
DpnII	GATC	1 cut(s)	572
Eam1104I	CTCTTC	1 cut(s)	487
EarI	CTCTTC	1 cut(s)	487
Ecl136II	GAGCTC	1 cut(s)	320
Eco24I	GRGCYC	2 cut(s)	165, 322
Eco47I	GGWCC	1 cut(s)	613
Eco53kI	GAGCTC	1 cut(s)	320
Eco88I	CYCGRG	1 cut(s)	505
EcoICRI	GAGCTC	1 cut(s)	320
EcoRII	CCWGG	2 cut(s)	154, 325
EcoT38I	GRGCYC	2 cut(s)	165, 322
FaeI	CATG	2 cut(s)	76, 175
FaqI	GGGAC	2 cut(s)	559, 599
FatI	CATG	2 cut(s)	72, 171
FauI	CCCGC	1 cut(s)	113
Fnu4HI	GCNGC	2 cut(s)	186, 556
FokI	GGATG	3 cut(s)	55, 278, 309
FriOI	GRGCYC	2 cut(s)	165, 322
Fsp4HI	GCNGC	2 cut(s)	186, 556
GlaI	GCGC	1 cut(s)	718
GluI	GCNGC	2 cut(s)	186, 556
GsuI	CTGGAG	1 cut(s)	336
HhaI	GCGC	1 cut(s)	719
Hin1I	GRCGYC	1 cut(s)	222
Hin1II	CATG	2 cut(s)	76, 175
Hin6I	GCGC	1 cut(s)	717
HinP1I	GCGC	1 cut(s)	717
HincII	GTYRAC	1 cut(s)	478
HindII	GTYRAC	1 cut(s)	478
HindIII	AAGCTT	2 cut(s)	29, 83
HinfI	GANTC	3 cut(s)	129, 479, 650
HphI	GGTGA	2 cut(s)	482, 618
Hpy166II	GTNNAC	3 cut(s)	112, 478, 584
Hpy188I	TCNGA	3 cut(s)	106, 487, 523
Hpy188III	TCNNGA	3 cut(s)	78, 536, 604
Hpy8I	GTNNAC	3 cut(s)	112, 478, 584
Hpy99I	CGWCG	1 cut(s)	182
HpyAV	CCTTC	2 cut(s)	628, 639
HpyCH4III	ACNGT	4 cut(s)	335, 595, 664, 688
HpyCH4IV	ACGT	2 cut(s)	222, 645
HpyCH4V	TGCA	3 cut(s)	259, 302, 388
HpyF10VI	GCNNNNNNNGC	2 cut(s)	18, 385
HpyF3I	CTNAG	1 cut(s)	520
HpySE526I	ACGT	2 cut(s)	222, 645
Hsp92I	GRCGYC	1 cut(s)	222
Hsp92II	CATG	2 cut(s)	76, 175
HspAI	GCGC	1 cut(s)	717
Kzo9I	GATC	1 cut(s)	572
LmnI	GCTCC	2 cut(s)	317, 436
Lsp1109I	GCAGC	2 cut(s)	172, 567
MaeII	ACGT	2 cut(s)	222, 645
MalI	GATC	1 cut(s)	574
MbiI	CCGCTC	1 cut(s)	707
MboI	GATC	1 cut(s)	572
MboII	GAAGA	2 cut(s)	226, 474
MfeI	CAATTG	1 cut(s)	712
MhlI	GDGCHC	2 cut(s)	165, 322
MluCI	AATT	1 cut(s)	712
MlyI	GAGTC	3 cut(s)	138, 473, 659
MmeI	TCCRAC	1 cut(s)	335
MnlI	CCTC	7 cut(s)	105, 281, 361, 433, 466, 514, 634
MseI	TTAA	3 cut(s)	48, 228, 730
MspR9I	CCNGG	2 cut(s)	156, 327
MunI	CAATTG	1 cut(s)	712
MvaI	CCWGG	2 cut(s)	156, 327
MwoI	GCNNNNNNNGC	2 cut(s)	18, 385
NdeII	GATC	1 cut(s)	572
NlaIII	CATG	2 cut(s)	76, 175
NlaIV	GGNNCC	1 cut(s)	615
NspI	RCATGY	1 cut(s)	76
PcsI	WCGNNNNNNNCGW	1 cut(s)	651
PflMI	CCANNNNNTGG	2 cut(s)	43, 610
PfoI	TCCNGGA	1 cut(s)	325
PkrI	GCNGC	2 cut(s)	187, 557
PleI	GAGTC	3 cut(s)	137, 473, 658
PpsI	GAGTC	3 cut(s)	137, 473, 658
PshAI	GACNNNNGTC	1 cut(s)	611
Psp124BI	GAGCTC	1 cut(s)	322
Psp1406I	AACGTT	1 cut(s)	645
Psp6I	CCWGG	2 cut(s)	154, 325
PspGI	CCWGG	2 cut(s)	154, 325
PspN4I	GGNNCC	1 cut(s)	615
PspPI	GGNCC	1 cut(s)	613
RsaI	GTAC	1 cut(s)	360
RsaNI	GTAC	1 cut(s)	359
SacI	GAGCTC	1 cut(s)	322
SaqAI	TTAA	3 cut(s)	48, 228, 730
SatI	GCNGC	2 cut(s)	186, 556
Sau3AI	GATC	1 cut(s)	572
Sau96I	GGNCC	1 cut(s)	613
SchI	GAGTC	3 cut(s)	138, 473, 659
ScrFI	CCNGG	2 cut(s)	156, 327
SduI	GDGCHC	2 cut(s)	165, 322
SinI	GGWCC	1 cut(s)	613
Sse9I	AATT	1 cut(s)	712
SsiI	CCGC	2 cut(s)	120, 705
SstI	GAGCTC	1 cut(s)	322
StyD4I	CCNGG	2 cut(s)	154, 325
TaaI	ACNGT	4 cut(s)	335, 595, 664, 688
TaiI	ACGT	2 cut(s)	225, 648
TaqI	TCGA	3 cut(s)	127, 438, 551
TasI	AATT	1 cut(s)	712
Tru1I	TTAA	3 cut(s)	48, 228, 730
Tru9I	TTAA	3 cut(s)	48, 228, 730
TscAI	CASTG	3 cut(s)	172, 266, 600
TseI	GCWGC	2 cut(s)	185, 555
TspDTI	ATGAA	3 cut(s)	41, 258, 305
TspGWI	ACGGA	2 cut(s)	294, 643
TspRI	CASTG	3 cut(s)	172, 266, 600
Van91I	CCANNNNNTGG	2 cut(s)	43, 610
VpaK11BI	GGWCC	1 cut(s)	613
XceI	RCATGY	1 cut(s)	76
ZraI	GACGTC	1 cut(s)	223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.