Rorug03G0242200

Homeobox-leucine zipper protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0006882
Physical Location & Seq
Reverse (-)
22577058 .. 22579558
2501 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0242200.1

Sequence Viewer

Length: 915 bp
ATGGTCCAAAAGCCTAGTTCTGTTATTGGATCTACTGGTTCCATTGGAACCGAGACATTGGACATTGTTGCAGAGAACCCGAAAAAATTTAGAGTTGTGGCCCTAGTAGCTGGCTCAAATGTGACTCTTCTTGTTGATCAGGTGAAAAGGTTCAAACCCAAATTAGTTGCAGTTAGAAATGAATCATTAGTTAATGAACTTAAAGAGGCTCTATCTGGTCTAGAAGACAAGCCTGAGATCAGTCCTAGGGAGCAAGGAGTCATTGAGATAAACTATATTCACTTTATTTTCCCTTTGGATGTGAGATTTAGGAATGATAGTAGAGGGCTGGATGTTCCTTCATCACTAGCTGTGACTGCAGATAAAACTGATGGTACAGTTGCTCTGGTGAAATCAGGTCCTGAGAAAGTTAAAACTACCCCTGCAGGAGAATATCTTACTTCTGCCTTGAATGATTTTGACCCTGAACAACATGACAGTCTTGCTGCCATTTCAGATGGTGCAAACAAACTTTTGATGCTGGTTCTGGCTGCAGTAATTAAAGCTGGGGCTTCTAGGGAGCATGAAATACTTGCTGAAATAAGAGATGTTGTTTTCTCTTTTATTCGTAAAATGGAACCGCAGAGGGTAATGGACACCATGCTTGTATCCCGTGTTAGAATTTTGTATATTACATCTTTGCTTGCTAGATCACCAGAGCTGCAGTCCATCAAGGTTTCTCCCGTTGAGAATTTTCTAGAGAAGGTAATACTGGACGTAGTAGAAGCTCCAGTCGGGGTAGCAGCCCTGGAAGAAGTCCTGCTTTATGCTCAACTTGGAGGGATGATGGGGCGACTGTCTTCTCTTGAGGCTGTGACAAGCAAGCTAAGATGTGGTCCTTGGCTACAAACCAACAATGATTGTTGCTCTGCATGA

Protein Analysis

304

Amino Acids

33.07

Weight (kDa)

5.45

Isoelectric Point (pI)

38.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DXP_reductoisom PF02670 7 - 90 2.8e-22 1-deoxy-D-xylulose 5-phosphate reductoisomerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 620
AclWI GGATC 1 cut(s) 37
AcsI RAATTY 3 cut(s) 86, 660, 730
AfaI GTAC 1 cut(s) 376
AgsI TTSAA 2 cut(s) 154, 451
AjnI CCWGG 1 cut(s) 786
AluBI AGCT 6 cut(s) 110, 350, 545, 700, 767, 865
AluI AGCT 6 cut(s) 110, 350, 545, 700, 767, 865
Alw26I GTCTC 1 cut(s) 47
AlwI GGATC 1 cut(s) 37
AlwNI CAGNNNCTG 1 cut(s) 401
AoxI GGCC 1 cut(s) 99
ApeKI GCWGC 4 cut(s) 485, 530, 700, 782
ApoI RAATTY 3 cut(s) 86, 660, 730
Asp700I GAANNNNTTC 1 cut(s) 149
AspA2I CCTAGG 1 cut(s) 245
AspS9I GGNCC 4 cut(s) 4, 100, 398, 875
AsuHPI GGTGA 3 cut(s) 154, 400, 684
AvaII GGWCC 3 cut(s) 4, 398, 875
AvrII CCTAGG 1 cut(s) 245
BbsI GAAGAC 2 cut(s) 231, 831
BbvI GCAGC 4 cut(s) 472, 517, 687, 794
BccI CCATC 4 cut(s) 365, 491, 716, 820
BciT130I CCWGG 1 cut(s) 788
BciVI GTATCC 1 cut(s) 658
BclI TGATCA 1 cut(s) 136
BcoDI GTCTC 1 cut(s) 47
BfaI CTAG 8 cut(s) 15, 104, 221, 246, 347, 555, 687, 737
BfmI CTRYAG 4 cut(s) 357, 423, 531, 701
BfuI GTATCC 1 cut(s) 658
BisI GCNGC 4 cut(s) 486, 531, 701, 783
BlnI CCTAGG 1 cut(s) 245
BlsI GCNGC 4 cut(s) 487, 532, 702, 784
Bme1390I CCNGG 1 cut(s) 788
Bme18I GGWCC 3 cut(s) 4, 398, 875
BmgT120I GGNCC 4 cut(s) 4, 100, 398, 875
BmiI GGNNCC 3 cut(s) 40, 49, 618
BmrFI CCNGG 1 cut(s) 788
BmsI GCATC 1 cut(s) 507
BpiI GAAGAC 2 cut(s) 231, 831
BpmI CTGGAG 1 cut(s) 753
BpuEI CTTGAG 1 cut(s) 866
BsaJI CCNNGG 3 cut(s) 245, 786, 878
Bse1I ACTGG 3 cut(s) 40, 756, 770
BseBI CCWGG 1 cut(s) 788
BseDI CCNNGG 3 cut(s) 245, 786, 878
BseGI GGATG 3 cut(s) 304, 337, 828
BseMII CTCAG 2 cut(s) 225, 393
BseNI ACTGG 3 cut(s) 40, 756, 770
BseXI GCAGC 4 cut(s) 472, 517, 687, 794
BseYI CCCAGC 1 cut(s) 545
BshFI GGCC 1 cut(s) 101
BsmAI GTCTC 1 cut(s) 47
BsnI GGCC 1 cut(s) 101
Bsp143I GATC 4 cut(s) 29, 136, 237, 689
BspACI CCGC 1 cut(s) 620
BspANI GGCC 1 cut(s) 101
BspCNI CTCAG 2 cut(s) 226, 394
BspLI GGNNCC 3 cut(s) 40, 49, 618
BspMAI CTGCAG 4 cut(s) 361, 427, 535, 705
BspPI GGATC 1 cut(s) 37
BsrI ACTGG 3 cut(s) 40, 756, 770
BssECI CCNNGG 3 cut(s) 245, 786, 878
BssMI GATC 4 cut(s) 29, 136, 237, 689
BssT1I CCWWGG 2 cut(s) 245, 878
Bst2UI CCWGG 1 cut(s) 788
Bst4CI ACNGT 3 cut(s) 379, 479, 837
Bst6I CTCTTC 1 cut(s) 132
BstC8I GCNNGC 3 cut(s) 112, 684, 863
BstDEI CTNAG 3 cut(s) 234, 402, 866
BstF5I GGATG 3 cut(s) 304, 337, 828
BstKTI GATC 4 cut(s) 32, 139, 240, 692
BstMAI GTCTC 1 cut(s) 47
BstMBI GATC 4 cut(s) 29, 136, 237, 689
BstMWI GCNNNNNNNGC 2 cut(s) 107, 356
BstNI CCWGG 1 cut(s) 788
BstSCI CCNGG 1 cut(s) 786
BstSFI CTRYAG 4 cut(s) 357, 423, 531, 701
BstV1I GCAGC 4 cut(s) 472, 517, 687, 794
BstV2I GAAGAC 2 cut(s) 231, 831
BstX2I RGATCY 1 cut(s) 29
BstYI RGATCY 1 cut(s) 29
BsuI GTATCC 1 cut(s) 658
BsuRI GGCC 1 cut(s) 101
BtsCI GGATG 3 cut(s) 304, 337, 828
Cac8I GCNNGC 3 cut(s) 112, 684, 863
CaiI CAGNNNCTG 1 cut(s) 401
Cfr13I GGNCC 4 cut(s) 4, 100, 398, 875
Csp6I GTAC 1 cut(s) 375
CviAII CATG 4 cut(s) 473, 563, 640, 912
CviQI GTAC 1 cut(s) 375
DdeI CTNAG 3 cut(s) 234, 402, 866
DpnI GATC 4 cut(s) 31, 138, 239, 691
DpnII GATC 4 cut(s) 29, 136, 237, 689
Eam1104I CTCTTC 1 cut(s) 132
EarI CTCTTC 1 cut(s) 132
Eco130I CCWWGG 2 cut(s) 245, 878
Eco47I GGWCC 3 cut(s) 4, 398, 875
EcoO109I RGGNCCY 1 cut(s) 398
EcoRII CCWGG 1 cut(s) 786
EcoT14I CCWWGG 2 cut(s) 245, 878
ErhI CCWWGG 2 cut(s) 245, 878
FaeI CATG 4 cut(s) 476, 566, 643, 915
FaiI YATR 7 cut(s) 276, 474, 564, 641, 669, 807, 913
FalI AAGNNNNNCTT 2 cut(s) 786, 818
FatI CATG 4 cut(s) 472, 562, 639, 911
FbaI TGATCA 1 cut(s) 136
Fnu4HI GCNGC 4 cut(s) 486, 531, 701, 783
FokI GGATG 3 cut(s) 311, 344, 835
Fsp4HI GCNGC 4 cut(s) 486, 531, 701, 783
FspBI CTAG 8 cut(s) 15, 104, 221, 246, 347, 555, 687, 737
GluI GCNGC 4 cut(s) 486, 531, 701, 783
GsaI CCCAGC 1 cut(s) 549
GsuI CTGGAG 1 cut(s) 753
HaeIII GGCC 1 cut(s) 101
Hin1II CATG 4 cut(s) 476, 566, 643, 915
HinfI GANTC 3 cut(s) 124, 182, 258
HphI GGTGA 3 cut(s) 154, 400, 684
Hpy188I TCNGA 1 cut(s) 496
Hpy188III TCNNGA 4 cut(s) 221, 401, 737, 845
HpyAV CCTTC 2 cut(s) 348, 736
HpyCH4III ACNGT 3 cut(s) 379, 479, 837
HpyCH4IV ACGT 1 cut(s) 756
HpyCH4V TGCA 8 cut(s) 71, 170, 359, 425, 503, 533, 703, 911
HpyF10VI GCNNNNNNNGC 2 cut(s) 107, 356
HpyF3I CTNAG 3 cut(s) 234, 402, 866
HpySE526I ACGT 1 cut(s) 756
Hsp92II CATG 4 cut(s) 476, 566, 643, 915
Ksp22I TGATCA 1 cut(s) 136
Kzo9I GATC 4 cut(s) 29, 136, 237, 689
LmnI GCTCC 3 cut(s) 250, 559, 772
Lsp1109I GCAGC 4 cut(s) 472, 517, 687, 794
LweI GCATC 1 cut(s) 507
MaeI CTAG 8 cut(s) 15, 104, 221, 246, 347, 555, 687, 737
MaeII ACGT 1 cut(s) 756
MaeIII GTNAC 3 cut(s) 121, 352, 853
MalI GATC 4 cut(s) 31, 138, 239, 691
MboI GATC 4 cut(s) 29, 136, 237, 689
MboII GAAGA 4 cut(s) 119, 236, 803, 831
MflI RGATCY 1 cut(s) 29
MluCI AATT 5 cut(s) 86, 161, 537, 660, 730
MlyI GAGTC 2 cut(s) 118, 267
MnlI CCTC 5 cut(s) 199, 317, 618, 812, 841
MroXI GAANNNNTTC 1 cut(s) 149
MseI TTAA 4 cut(s) 192, 201, 411, 540
MspR9I CCNGG 1 cut(s) 788
MvaI CCWGG 1 cut(s) 788
MwoI GCNNNNNNNGC 2 cut(s) 107, 356
NdeII GATC 4 cut(s) 29, 136, 237, 689
NlaIII CATG 4 cut(s) 476, 566, 643, 915
NlaIV GGNNCC 3 cut(s) 40, 49, 618
NmuCI GTSAC 3 cut(s) 121, 352, 853
PdmI GAANNNNTTC 1 cut(s) 149
PfeI GAWTC 1 cut(s) 182
PkrI GCNGC 4 cut(s) 487, 532, 702, 784
PleI GAGTC 2 cut(s) 118, 266
PpsI GAGTC 2 cut(s) 118, 266
PpuMI RGGWCCY 1 cut(s) 398
Psp5II RGGWCCY 1 cut(s) 398
Psp6I CCWGG 1 cut(s) 786
PspFI CCCAGC 1 cut(s) 545
PspGI CCWGG 1 cut(s) 786
PspN4I GGNNCC 3 cut(s) 40, 49, 618
PspPI GGNCC 4 cut(s) 4, 100, 398, 875
PspPPI RGGWCCY 1 cut(s) 398
PstI CTGCAG 4 cut(s) 361, 427, 535, 705
PstNI CAGNNNCTG 1 cut(s) 401
PsuI RGATCY 1 cut(s) 29
RsaI GTAC 1 cut(s) 376
RsaNI GTAC 1 cut(s) 375
SaqAI TTAA 4 cut(s) 192, 201, 411, 540
SatI GCNGC 4 cut(s) 486, 531, 701, 783
Sau3AI GATC 4 cut(s) 29, 136, 237, 689
Sau96I GGNCC 4 cut(s) 4, 100, 398, 875
SbfI CCTGCAGG 1 cut(s) 427
SchI GAGTC 2 cut(s) 118, 267
ScrFI CCNGG 1 cut(s) 788
SdaI CCTGCAGG 1 cut(s) 427
SfaNI GCATC 1 cut(s) 507
SfcI CTRYAG 4 cut(s) 357, 423, 531, 701
SinI GGWCC 3 cut(s) 4, 398, 875
SmlI CTYRAG 1 cut(s) 845
SmoI CTYRAG 1 cut(s) 845
Sse8387I CCTGCAGG 1 cut(s) 427
Sse9I AATT 5 cut(s) 86, 161, 537, 660, 730
SsiI CCGC 1 cut(s) 620
SspMI CTAG 8 cut(s) 15, 104, 221, 246, 347, 555, 687, 737
StyD4I CCNGG 1 cut(s) 786
StyI CCWWGG 2 cut(s) 245, 878
TaaI ACNGT 3 cut(s) 379, 479, 837
TaiI ACGT 1 cut(s) 759
TasI AATT 5 cut(s) 86, 161, 537, 660, 730
TfiI GAWTC 1 cut(s) 182
Tru1I TTAA 4 cut(s) 192, 201, 411, 540
Tru9I TTAA 4 cut(s) 192, 201, 411, 540
TseFI GTSAC 3 cut(s) 121, 352, 853
TseI GCWGC 4 cut(s) 485, 530, 700, 782
Tsp45I GTSAC 3 cut(s) 121, 352, 853
TspDTI ATGAA 4 cut(s) 195, 210, 330, 579
VpaK11BI GGWCC 3 cut(s) 4, 398, 875
XapI RAATTY 3 cut(s) 86, 660, 730
XbaI TCTAGA 2 cut(s) 220, 736
XmaJI CCTAGG 1 cut(s) 245
XmnI GAANNNNTTC 1 cut(s) 149
XspI CTAG 8 cut(s) 15, 104, 221, 246, 347, 555, 687, 737
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.