Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_samantha

Chromosome

Unknown

Orthogroup ID

OG0006882

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG324700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2142 bp

ATGGACCTTCCCATGGGAAATGGAAATGAAAATGGTGGAGCCTTGGGTGATGAACAAGAAGCATCGAATTCTCGCAAGAGAGGGAAGACTTATCACCGCCACACCTCTCAGCAGATACAACATCTCGAAGCATTTTTCAAGAAATGCCCCCACCCGGACGATAACCAACGTCGTCAGTTGAGCAAGGAGCTAGGGTTAGAGCCACAACAGATCAAGTTTTGGTTCCAAAACAAGAGGACTCAAACAAAGACTCAAACTGAGAGAGCAGACAACTCCACTCTTCGAGCGGAAAACAGTAGGATCCAGTGTGAGAACTATGCAATTAAAGAGGCTTTGAAGAATGTCATTTGTCCTGCTTGTGGAGGTCCTCCTTTTGGAGAGCAAGAACGGCAAAAGAGTTTGCAGAAACTTCACTTGGAGAATGCCCAATTGAAAGAAGAGCATGACAAAGTAGCGACCCTTCTTTCCAAGTTTATTGGGAAACCGCTATCTCAAATAGATTCGTTGACATATGCCGCTAGATCCTCGCCGGATGTATCACCAGGATTGTTAATAAACCAAGCAATGAGAAGTTCTGACCGTAGTCATGAATTTATTAATCCTACAATTAGTAACAATGCTGCGCTAGCTTATTACCAGGTAAGTGCAATCCCTGAGACTGAAAAGGCAGTCATGATAGAGACAGCGGCAAGTGCCATGGAAGAGTTGATTAGAATTTTGCGGATCAATGAGCCTATGTGGATCAAGTCCAACAGTGACGGGAGATACGTCCTTAACCATGAAAACTACGATAAGATATTTCCAAGGGCTTATCGCTTAAAAACCTCCAGTGCTCGTATAGAGTCCTCAAAAGATTCAGGAATTGCGAGCATTAGTGCACTACAATTGGTTGACACATTTTTAGATGCAAATAAGTGGGTAGACCTCTTTCCAACAATTGTGACGAAAGCTAAAACAATTGAAGTACTCCAAGCAGGAATGTTTGGGACCCAGAGTGGTTGCTTACAACTGATGTATGGGCAAATGCACATTCTTTCACCACTGGTGCTTCCACGAGATTTCTACTTTCTCCGCTTTTGTCAGCAAATCGAAGTTGGCACATGGGTGATTGTTGATGTCTCTTATGATTGCTTTAAAGGAAGTACTACTCAACGATCATGGAGGCTTCCTTCAGGATGCATGATTCAAGACATGCCAAATGGATGCTCTAAGGTAACTTGGGTTGAACACGTGGAAGTCGATGATAAGACACAAACTCATCGGCTCTATAGAGATCTTGTGTGTGGTAGCGTCGCATATGGAGCACAAAGATGGATCGTTACTCTCCAGAGGATGTGTGAAAGATTTGGTTGCTCATTCGATGACGTTTCATCTAGTAGCGAATTTGGAGCAATGTTTGCTATGCCCGAAGGCAGAAGTAGCATAATGAAGCTTTCCCACAGGATGGTTAAGAACTTTTGTGGAATGTTGAGTATGTCAGGAAAGCTTGATTTCCCTCAACTATCAGAAGTGAATAATAGCGGGGTTCGAGTCAATGTTCGTAAAAGCATAGAACCAGGCGAGCCCAGTGGCATGGTCGTCGTTGCTGCTACTTCTCTATGGCTTCCTCTATATTCCCAAGACGTCTTTAACTTCTTCACAAATGAAAAAACAAGAGTGCAGTGGGATGTCCTCTCTAACGGAAATCCAATGAATGTGATTGCACACATTCCAACTGGAGCTCATCCAGGAAACTGTATTTCTATCATTCAGCCTTTTGTACCGACAGAGGGTAATATGCTTCTTTTGCAAGAAAGTTATATAGACACTCTGGGGTCTATGGTTATCTATGCTCCTGTCGAGGTAGCTACTATCAATATAGCAGTCGGGGGTGAGGTTGACTCTTCTGACATTCCCATACTTCCCTCGGGGTTCATAATCTCAGATGATGGTCGTCCTGATACTAGGACATCAAGCAGCACAAACCCTGCCAAATCAGGTCATTCAGGTGGTTCACTCCTTACTGTGGCTTTCCAGATATTGGTTCCCTTCCCCTCACCTTCCCAAGTGCTGAACGTTGAGTCCGTGGCAAGTGTCAATACTCTTATTAGTTTGACTGTTCAAAAAATAAAAACTGCTCTCAACTGCGCTGGCTTGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox START

Protein Analysis

713

Amino Acids

79.11

Weight (kDa)

6.46

Isoelectric Point (pI)

44.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	29 - 83	5.5e-18	Homeodomain
Homeobox_KN	PF05920	48 - 80	5.4e-06	Homeobox KN domain
START	PF01852	229 - 448	6e-30	START domain
PDF2_C	PF25797	469 - 709	2.5e-101	PDF2-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006882)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03260 AT3G03260
fragaria_vesca	FvH4_1g27700
malus_domestica	MD09G1277500.v1.1 MD09G1277600.v1.1 MD09G1277900.v1.1 MD17G1271000.v1.1 MD17G1271100.v1.1
prunus_persica	Prupe.3G015300_v2.0.a1
pyrus_communis	pycom09g18690 pycom09g18700 pycom09g18710 pycom17g26940
rosa_chinensis	RchiOBHm_Chr3g0488861
rosa_laevigata	RLG00000022916
rosa_multiflora	Rmu_sc0001208.1_g000028
rosa_roxburghii	Rroxscaffold_6G00393800 Rroxscaffold_6G00393810
rosa_rugosa	Rorug03G0242100 Rorug03G0242200
rosa_samantha	Rh3AG290200 Rh3BG327300 Rh3BG327400 Rh3CG324700 Rh3DG323300
rosa_wichuraiana	Rw3G025720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1626
AccB7I	CCANNNNNTGG	2 cut(s)	1444, 2020
AccBSI	CCGCTC	1 cut(s)	287
AccI	GTMKAC	1 cut(s)	921
AciI	CCGC	8 cut(s)	97, 287, 485, 516, 686, 721, 1072, 1521
AclI	AACGTT	1 cut(s)	2055
AclWI	GGATC	6 cut(s)	295, 308, 516, 731, 749, 1322
AcsI	RAATTY	4 cut(s)	67, 590, 714, 1382
AcuI	CTGAAG	1 cut(s)	1155
AcvI	CACGTG	1 cut(s)	1231
AcyI	GRCGYC	1 cut(s)	1623
AfaI	GTAC	3 cut(s)	966, 1144, 1761
AfiI	CCNNNNNNNGG	8 cut(s)	13, 154, 359, 374, 1444, 1769, 2005, 2020
AflIII	ACRYGT	1 cut(s)	1228
AgsI	TTSAA	7 cut(s)	139, 337, 433, 962, 1187, 1226, 2102
AjnI	CCWGG	4 cut(s)	541, 636, 1555, 1726
AjuI	GAANNNNNNNTTGG	2 cut(s)	398, 430
AleI	CACNNNNGTG	1 cut(s)	1103
AloI	GAACNNNNNNTCC	2 cut(s)	2045, 2077
AluBI	AGCT	7 cut(s)	190, 629, 950, 1432, 1486, 1721, 1847
AluI	AGCT	7 cut(s)	190, 629, 950, 1432, 1486, 1721, 1847
Alw21I	GWGCWC	4 cut(s)	835, 880, 1306, 1723
Alw26I	GTCTC	3 cut(s)	650, 674, 1123
Alw44I	GTGCAC	1 cut(s)	876
AlwI	GGATC	6 cut(s)	295, 308, 516, 731, 749, 1322
Ama87I	CYCGRG	1 cut(s)	1906
ApaLI	GTGCAC	1 cut(s)	876
ApeKI	GCWGC	3 cut(s)	620, 1586, 1956
ApoI	RAATTY	4 cut(s)	67, 590, 714, 1382
AseI	ATTAAT	1 cut(s)	597
AspLEI	GCGC	2 cut(s)	625, 2129
AspS9I	GGNCC	3 cut(s)	4, 365, 987
AsuC2I	CCSGG	1 cut(s)	155
AsuHPI	GGTGA	7 cut(s)	59, 86, 531, 1029, 1117, 1883, 2028
AsuNHI	GCTAGC	1 cut(s)	625
AvaI	CYCGRG	1 cut(s)	1906
AvaII	GGWCC	3 cut(s)	4, 365, 987
BaeGI	GKGCMC	1 cut(s)	880
BamHI	GGATCC	1 cut(s)	300
BanII	GRGCYC	2 cut(s)	1566, 1723
BarI	GAAGNNNNNNTAC	2 cut(s)	444, 476
BauI	CACGAG	1 cut(s)	1053
BbrPI	CACGTG	1 cut(s)	1231
BbsI	GAAGAC	1 cut(s)	92
Bbv12I	GWGCWC	4 cut(s)	835, 880, 1306, 1723
BbvI	GCAGC	3 cut(s)	607, 1573, 1968
BccI	CCATC	3 cut(s)	1305, 1438, 1922
BceAI	ACGGC	1 cut(s)	404
BcgI	CGANNNNNNTGC	2 cut(s)	1561, 1595
BciT130I	CCWGG	4 cut(s)	543, 638, 1557, 1728
BcnI	CCSGG	1 cut(s)	155
BcoDI	GTCTC	3 cut(s)	650, 674, 1123
BfaI	CTAG	5 cut(s)	191, 519, 626, 1374, 1944
BfmI	CTRYAG	1 cut(s)	1267
BglII	AGATCT	1 cut(s)	1273
BisI	GCNGC	5 cut(s)	516, 621, 687, 1587, 1957
BlsI	GCNGC	5 cut(s)	517, 622, 688, 1588, 1958
BmcAI	AGTACT	2 cut(s)	966, 1144
Bme1390I	CCNGG	5 cut(s)	155, 543, 638, 1557, 1728
Bme18I	GGWCC	3 cut(s)	4, 365, 987
BmeT110I	CYCGRG	1 cut(s)	1906
BmgT120I	GGNCC	3 cut(s)	4, 365, 987
BmiI	GGNNCC	6 cut(s)	40, 224, 302, 988, 989, 2025
BmrFI	CCNGG	5 cut(s)	155, 543, 638, 1557, 1728
BmrI	ACTGGG	1 cut(s)	1560
BmsI	GCATC	4 cut(s)	71, 895, 1166, 1193
BmtI	GCTAGC	1 cut(s)	629
BmuI	ACTGGG	1 cut(s)	1560
BoxI	GACNNNNGTC	1 cut(s)	582
BpiI	GAAGAC	1 cut(s)	92
BplI	GAGNNNNNCTC	2 cut(s)	1865, 1897
BpmI	CTGGAG	3 cut(s)	811, 1310, 1737
BpuMI	CCSGG	1 cut(s)	155
BsaAI	YACGTR	1 cut(s)	1231
BsaHI	GRCGYC	1 cut(s)	1623
BsaJI	CCNNGG	6 cut(s)	12, 42, 696, 803, 1905, 2064
BsaXI	ACNNNNNCTCC	2 cut(s)	179, 209
Bsc4I	CCNNNNNNNGG	8 cut(s)	13, 154, 359, 374, 1444, 1769, 2005, 2020
Bse1I	ACTGG	5 cut(s)	304, 828, 1047, 1566, 1720
Bse3DI	GCAATG	2 cut(s)	570, 1398
BseBI	CCWGG	4 cut(s)	543, 638, 1557, 1728
BseDI	CCNNGG	6 cut(s)	12, 42, 696, 803, 1905, 2064
BseGI	GGATG	7 cut(s)	538, 1181, 1208, 1338, 1449, 1672, 1723
BseLI	CCNNNNNNNGG	8 cut(s)	13, 154, 359, 374, 1444, 1769, 2005, 2020
BseMI	GCAATG	2 cut(s)	570, 1398
BseMII	CTCAG	4 cut(s)	122, 249, 645, 1935
BseNI	ACTGG	5 cut(s)	304, 828, 1047, 1566, 1720
BseSI	GKGCMC	1 cut(s)	880
BseXI	GCAGC	3 cut(s)	607, 1573, 1968
BsgI	GTGCAG	1 cut(s)	1679
BsiHKAI	GWGCWC	4 cut(s)	835, 880, 1306, 1723
BsiHKCI	CYCGRG	1 cut(s)	1906
BsiSI	CCGG	2 cut(s)	155, 530
BslFI	GGGAC	1 cut(s)	1000
BslI	CCNNNNNNNGG	8 cut(s)	13, 154, 359, 374, 1444, 1769, 2005, 2020
BsmAI	GTCTC	3 cut(s)	650, 674, 1123
BsmFI	GGGAC	1 cut(s)	1000
BsmI	GAATGC	1 cut(s)	427
BsoBI	CYCGRG	1 cut(s)	1906
Bsp1286I	GDGCHC	5 cut(s)	835, 880, 1306, 1566, 1723
Bsp143I	GATC	8 cut(s)	210, 300, 521, 723, 741, 1154, 1273, 1314
Bsp19I	CCATGG	2 cut(s)	12, 696
BspACI	CCGC	8 cut(s)	97, 287, 485, 516, 686, 721, 1072, 1521
BspCNI	CTCAG	4 cut(s)	121, 250, 646, 1934
BspHI	TCATGA	2 cut(s)	586, 672
BspLI	GGNNCC	6 cut(s)	40, 224, 302, 988, 989, 2025
BspOI	GCTAGC	1 cut(s)	629
BspPI	GGATC	6 cut(s)	295, 308, 516, 731, 749, 1322
BspQI	GCTCTTC	1 cut(s)	432
BsrBI	CCGCTC	1 cut(s)	287
BsrDI	GCAATG	2 cut(s)	570, 1398
BsrI	ACTGG	5 cut(s)	304, 828, 1047, 1566, 1720
BssECI	CCNNGG	6 cut(s)	12, 42, 696, 803, 1905, 2064
BssMI	GATC	8 cut(s)	210, 300, 521, 723, 741, 1154, 1273, 1314
BssNI	GRCGYC	1 cut(s)	1623
BssSI	CACGAG	1 cut(s)	1053
BssT1I	CCWWGG	4 cut(s)	12, 42, 696, 803
Bst2BI	CACGAG	1 cut(s)	1053
Bst2UI	CCWGG	4 cut(s)	543, 638, 1557, 1728
Bst4CI	ACNGT	6 cut(s)	296, 581, 755, 1736, 2005, 2098
Bst6I	CTCTTC	4 cut(s)	285, 432, 696, 1888
BstACI	GRCGYC	1 cut(s)	1623
BstAPI	GCANNNNNTGC	1 cut(s)	1397
BstBAI	YACGTR	1 cut(s)	1231
BstC8I	GCNNGC	4 cut(s)	627, 868, 1562, 2131
BstDEI	CTNAG	5 cut(s)	108, 258, 654, 1209, 1921
BstDSI	CCRYGG	3 cut(s)	12, 696, 2064
BstF5I	GGATG	7 cut(s)	538, 1181, 1208, 1338, 1449, 1672, 1723
BstHHI	GCGC	2 cut(s)	625, 2129
BstKTI	GATC	8 cut(s)	213, 303, 524, 726, 744, 1157, 1276, 1317
BstMAI	GTCTC	3 cut(s)	650, 674, 1123
BstMBI	GATC	8 cut(s)	210, 300, 521, 723, 741, 1154, 1273, 1314
BstMWI	GCNNNNNNNGC	7 cut(s)	388, 626, 692, 1301, 1397, 1419, 1786
BstNI	CCWGG	4 cut(s)	543, 638, 1557, 1728
BstNSI	RCATGY	1 cut(s)	1195
BstPAI	GACNNNNGTC	1 cut(s)	582
BstSCI	CCNGG	5 cut(s)	153, 541, 636, 1555, 1726
BstSFI	CTRYAG	1 cut(s)	1267
BstSLI	GKGCMC	1 cut(s)	880
BstV1I	GCAGC	3 cut(s)	607, 1573, 1968
BstV2I	GAAGAC	1 cut(s)	92
BstX2I	RGATCY	3 cut(s)	300, 521, 1273
BstXI	CCANNNNNNTGG	1 cut(s)	1573
BstYI	RGATCY	3 cut(s)	300, 521, 1273
BtgI	CCRYGG	3 cut(s)	12, 696, 2064
BtsCI	GGATG	7 cut(s)	538, 1181, 1208, 1338, 1449, 1672, 1723
BtsI	GCAGTG	1 cut(s)	1667
BtsIMutI	CAGTG	6 cut(s)	311, 760, 835, 1040, 1573, 1667
Cac8I	GCNNGC	4 cut(s)	627, 868, 1562, 2131
CciI	TCATGA	2 cut(s)	586, 672
CfoI	GCGC	2 cut(s)	625, 2129
Cfr13I	GGNCC	3 cut(s)	4, 365, 987
CseI	GACGC	1 cut(s)	1279
CsiI	ACCWGGT	1 cut(s)	636
Csp6I	GTAC	3 cut(s)	965, 1143, 1760
CviQI	GTAC	3 cut(s)	965, 1143, 1760
DdeI	CTNAG	5 cut(s)	108, 258, 654, 1209, 1921
DpnI	GATC	8 cut(s)	212, 302, 523, 725, 743, 1156, 1275, 1316
DpnII	GATC	8 cut(s)	210, 300, 521, 723, 741, 1154, 1273, 1314
DraI	TTTAAA	1 cut(s)	1135
Eam1104I	CTCTTC	4 cut(s)	285, 432, 696, 1888
EarI	CTCTTC	4 cut(s)	285, 432, 696, 1888
Ecl136II	GAGCTC	1 cut(s)	1721
Eco130I	CCWWGG	4 cut(s)	12, 42, 696, 803
Eco24I	GRGCYC	2 cut(s)	1566, 1723
Eco47I	GGWCC	3 cut(s)	4, 365, 987
Eco53kI	GAGCTC	1 cut(s)	1721
Eco57I	CTGAAG	1 cut(s)	1155
Eco72I	CACGTG	1 cut(s)	1231
Eco88I	CYCGRG	1 cut(s)	1906
EcoICRI	GAGCTC	1 cut(s)	1721
EcoO109I	RGGNCCY	2 cut(s)	365, 987
EcoRI	GAATTC	1 cut(s)	67
EcoRII	CCWGG	4 cut(s)	541, 636, 1555, 1726
EcoT14I	CCWWGG	4 cut(s)	12, 42, 696, 803
EcoT22I	ATGCAT	1 cut(s)	1181
EcoT38I	GRGCYC	2 cut(s)	1566, 1723
ErhI	CCWWGG	4 cut(s)	12, 42, 696, 803
FaqI	GGGAC	1 cut(s)	1000
FauI	CCCGC	1 cut(s)	1514
FauNDI	CATATG	2 cut(s)	511, 1297
FblI	GTMKAC	1 cut(s)	921
Fnu4HI	GCNGC	5 cut(s)	516, 621, 687, 1587, 1957
FokI	GGATG	7 cut(s)	545, 1188, 1215, 1345, 1456, 1679, 1710
FriOI	GRGCYC	2 cut(s)	1566, 1723
Fsp4HI	GCNGC	5 cut(s)	516, 621, 687, 1587, 1957
FspBI	CTAG	5 cut(s)	191, 519, 626, 1374, 1944
GlaI	GCGC	2 cut(s)	624, 2128
GluI	GCNGC	5 cut(s)	516, 621, 687, 1587, 1957
GsuI	CTGGAG	3 cut(s)	811, 1310, 1737
HapII	CCGG	2 cut(s)	155, 530
HgaI	GACGC	1 cut(s)	1279
HhaI	GCGC	2 cut(s)	625, 2129
Hin1I	GRCGYC	1 cut(s)	1623
Hin6I	GCGC	2 cut(s)	623, 2127
HinP1I	GCGC	2 cut(s)	623, 2127
HincII	GTYRAC	3 cut(s)	507, 892, 1879
HindII	GTYRAC	3 cut(s)	507, 892, 1879
HindIII	AAGCTT	2 cut(s)	1430, 1484
HinfI	GANTC	9 cut(s)	238, 250, 500, 842, 854, 1183, 1530, 1880, 2060
HpaII	CCGG	2 cut(s)	155, 530
HphI	GGTGA	7 cut(s)	59, 86, 531, 1029, 1117, 1883, 2028
Hpy166II	GTNNAC	6 cut(s)	507, 878, 892, 922, 1879, 1994
Hpy188I	TCNGA	4 cut(s)	577, 1507, 1888, 1924
Hpy8I	GTNNAC	6 cut(s)	507, 878, 892, 922, 1879, 1994
Hpy99I	CGWCG	3 cut(s)	174, 1295, 1583
HpyAV	CCTTC	6 cut(s)	17, 470, 1179, 1403, 2038, 2049
HpyCH4III	ACNGT	6 cut(s)	296, 581, 755, 1736, 2005, 2098
HpyCH4IV	ACGT	6 cut(s)	169, 768, 1230, 1365, 1623, 2055
HpyF10VI	GCNNNNNNNGC	7 cut(s)	388, 626, 692, 1301, 1397, 1419, 1786
HpyF3I	CTNAG	5 cut(s)	108, 258, 654, 1209, 1921
HpySE526I	ACGT	6 cut(s)	169, 768, 1230, 1365, 1623, 2055
Hsp92I	GRCGYC	1 cut(s)	1623
HspAI	GCGC	2 cut(s)	623, 2127
KflI	GGGWCCC	1 cut(s)	987
Kzo9I	GATC	8 cut(s)	210, 300, 521, 723, 741, 1154, 1273, 1314
LguI	GCTCTTC	1 cut(s)	432
LmnI	GCTCC	6 cut(s)	38, 187, 1301, 1388, 1718, 1837
Lsp1109I	GCAGC	3 cut(s)	607, 1573, 1968
LweI	GCATC	4 cut(s)	71, 895, 1166, 1193
MabI	ACCWGGT	1 cut(s)	636
MaeI	CTAG	5 cut(s)	191, 519, 626, 1374, 1944
MaeII	ACGT	6 cut(s)	169, 768, 1230, 1365, 1623, 2055
MaeIII	GTNAC	5 cut(s)	611, 755, 940, 1213, 1318
MalI	GATC	8 cut(s)	212, 302, 523, 725, 743, 1156, 1275, 1316
MbiI	CCGCTC	1 cut(s)	287
MboI	GATC	8 cut(s)	210, 300, 521, 723, 741, 1154, 1273, 1314
MboII	GAAGA	7 cut(s)	97, 272, 349, 449, 713, 1627, 1875
MfeI	CAATTG	4 cut(s)	428, 884, 936, 957
MflI	RGATCY	3 cut(s)	300, 521, 1273
MhlI	GDGCHC	5 cut(s)	835, 880, 1306, 1566, 1723
MlyI	GAGTC	6 cut(s)	232, 244, 851, 1539, 1874, 2069
MmeI	TCCRAC	3 cut(s)	774, 956, 1736
Mph1103I	ATGCAT	1 cut(s)	1181
MseI	TTAA	9 cut(s)	324, 551, 597, 774, 818, 1134, 1449, 1629, 2140
MslI	CAYNNNNRTG	3 cut(s)	1103, 1309, 1986
MspA1I	CMGCKG	1 cut(s)	686
MspI	CCGG	2 cut(s)	155, 530
MspR9I	CCNGG	5 cut(s)	155, 543, 638, 1557, 1728
MunI	CAATTG	4 cut(s)	428, 884, 936, 957
Mva1269I	GAATGC	1 cut(s)	427
MvaI	CCWGG	4 cut(s)	543, 638, 1557, 1728
MwoI	GCNNNNNNNGC	7 cut(s)	388, 626, 692, 1301, 1397, 1419, 1786
NciI	CCSGG	1 cut(s)	155
NcoI	CCATGG	2 cut(s)	12, 696
NdeI	CATATG	2 cut(s)	511, 1297
NdeII	GATC	8 cut(s)	210, 300, 521, 723, 741, 1154, 1273, 1314
NheI	GCTAGC	1 cut(s)	625
NlaIV	GGNNCC	6 cut(s)	40, 224, 302, 988, 989, 2025
NmuCI	GTSAC	2 cut(s)	755, 940
NsiI	ATGCAT	1 cut(s)	1181
NspI	RCATGY	1 cut(s)	1195
OliI	CACNNNNGTG	1 cut(s)	1103
PagI	TCATGA	2 cut(s)	586, 672
PciSI	GCTCTTC	1 cut(s)	432
PcsI	WCGNNNNNNNCGW	3 cut(s)	765, 1236, 2061
PctI	GAATGC	1 cut(s)	427
PfeI	GAWTC	3 cut(s)	500, 854, 1183
PflMI	CCANNNNNTGG	2 cut(s)	1444, 2020
PfoI	TCCNGGA	1 cut(s)	1726
PkrI	GCNGC	5 cut(s)	517, 622, 688, 1588, 1958
PleI	GAGTC	6 cut(s)	232, 244, 850, 1538, 1874, 2068
PmaCI	CACGTG	1 cut(s)	1231
PmlI	CACGTG	1 cut(s)	1231
PpsI	GAGTC	6 cut(s)	232, 244, 850, 1538, 1874, 2068
Ppu21I	YACGTR	1 cut(s)	1231
PpuMI	RGGWCCY	2 cut(s)	365, 987
PshAI	GACNNNNGTC	1 cut(s)	582
PshBI	ATTAAT	1 cut(s)	597
Psp124BI	GAGCTC	1 cut(s)	1723
Psp1406I	AACGTT	1 cut(s)	2055
Psp5II	RGGWCCY	2 cut(s)	365, 987
Psp6I	CCWGG	4 cut(s)	541, 636, 1555, 1726
PspCI	CACGTG	1 cut(s)	1231
PspGI	CCWGG	4 cut(s)	541, 636, 1555, 1726
PspN4I	GGNNCC	6 cut(s)	40, 224, 302, 988, 989, 2025
PspPI	GGNCC	3 cut(s)	4, 365, 987
PspPPI	RGGWCCY	2 cut(s)	365, 987
PsuI	RGATCY	3 cut(s)	300, 521, 1273
RsaI	GTAC	3 cut(s)	966, 1144, 1761
RsaNI	GTAC	3 cut(s)	965, 1143, 1760
RseI	CAYNNNNRTG	3 cut(s)	1103, 1309, 1986
SacI	GAGCTC	1 cut(s)	1723
SapI	GCTCTTC	1 cut(s)	432
SaqAI	TTAA	9 cut(s)	324, 551, 597, 774, 818, 1134, 1449, 1629, 2140
SatI	GCNGC	5 cut(s)	516, 621, 687, 1587, 1957
Sau3AI	GATC	8 cut(s)	210, 300, 521, 723, 741, 1154, 1273, 1314
Sau96I	GGNCC	3 cut(s)	4, 365, 987
ScaI	AGTACT	2 cut(s)	966, 1144
SchI	GAGTC	6 cut(s)	232, 244, 851, 1539, 1874, 2069
ScrFI	CCNGG	5 cut(s)	155, 543, 638, 1557, 1728
SduI	GDGCHC	5 cut(s)	835, 880, 1306, 1566, 1723
SexAI	ACCWGGT	1 cut(s)	636
SfaNI	GCATC	4 cut(s)	71, 895, 1166, 1193
SfcI	CTRYAG	1 cut(s)	1267
SinI	GGWCC	3 cut(s)	4, 365, 987
SmiMI	CAYNNNNRTG	3 cut(s)	1103, 1309, 1986
SsiI	CCGC	8 cut(s)	97, 287, 485, 516, 686, 721, 1072, 1521
SspMI	CTAG	5 cut(s)	191, 519, 626, 1374, 1944
SstI	GAGCTC	1 cut(s)	1723
StyD4I	CCNGG	5 cut(s)	153, 541, 636, 1555, 1726
StyI	CCWWGG	4 cut(s)	12, 42, 696, 803
TaaI	ACNGT	6 cut(s)	296, 581, 755, 1736, 2005, 2098
TaiI	ACGT	6 cut(s)	172, 771, 1233, 1368, 1626, 2058
TaqI	TCGA	8 cut(s)	65, 126, 283, 1089, 1239, 1359, 1528, 1839
TatI	WGTACW	2 cut(s)	964, 1142
TauI	GCSGC	2 cut(s)	518, 689
TfiI	GAWTC	3 cut(s)	500, 854, 1183
Tru1I	TTAA	9 cut(s)	324, 551, 597, 774, 818, 1134, 1449, 1629, 2140
Tru9I	TTAA	9 cut(s)	324, 551, 597, 774, 818, 1134, 1449, 1629, 2140
TscAI	CASTG	6 cut(s)	311, 760, 835, 1047, 1573, 1667
TseFI	GTSAC	2 cut(s)	755, 940
TseI	GCWGC	3 cut(s)	620, 1586, 1956
Tsp45I	GTSAC	2 cut(s)	755, 940
TspDTI	ATGAA	9 cut(s)	42, 66, 603, 795, 1359, 1442, 1659, 1706, 1903
TspGWI	ACGGA	2 cut(s)	1695, 2053
TspRI	CASTG	6 cut(s)	311, 760, 835, 1047, 1573, 1667
Van91I	CCANNNNNTGG	2 cut(s)	1444, 2020
VneI	GTGCAC	1 cut(s)	876
VpaK11BI	GGWCC	3 cut(s)	4, 365, 987
VspI	ATTAAT	1 cut(s)	597
XapI	RAATTY	4 cut(s)	67, 590, 714, 1382
XceI	RCATGY	1 cut(s)	1195
XmiI	GTMKAC	1 cut(s)	921
XspI	CTAG	5 cut(s)	191, 519, 626, 1374, 1944
ZraI	GACGTC	1 cut(s)	1624
ZrmI	AGTACT	2 cut(s)	966, 1144
Zsp2I	ATGCAT	1 cut(s)	1181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.