Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0006882

Physical Location & Seq

Genomic Coordinates Reverse (-)

22575782 .. 22576003

Gene Structure 222 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0242100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 222 bp

ATGGCCATCAAAGAGGGTCTAAAACTACTTCAATCGTTACAGGTTGGTAATGTGGTCATTGAAACTGATTGCCTTGAGGCTACATATGATATTGCTAATGTTAATTATGAGCTTGGAGCTATTGGAGGTCTAATAGATGACATAAAAATGGCCATGAGTACCATGCAGAATGTTTCAATATGTCATGCTCCAAGAACATGTAATGGAGTGACAAAAGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox START

Protein Analysis

73

Amino Acids

7.84

Weight (kDa)

4.64

Isoelectric Point (pI)

43.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	2 - 70	4.1e-08	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006882)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03260 AT3G03260
fragaria_vesca	FvH4_1g27700
malus_domestica	MD09G1277500.v1.1 MD09G1277600.v1.1 MD09G1277900.v1.1 MD17G1271000.v1.1 MD17G1271100.v1.1
prunus_persica	Prupe.3G015300_v2.0.a1
pyrus_communis	pycom09g18690 pycom09g18700 pycom09g18710 pycom17g26940
rosa_chinensis	RchiOBHm_Chr3g0488861
rosa_laevigata	RLG00000022916
rosa_multiflora	Rmu_sc0001208.1_g000028
rosa_roxburghii	Rroxscaffold_6G00393800 Rroxscaffold_6G00393810
rosa_rugosa	Rorug03G0242100 Rorug03G0242200
rosa_samantha	Rh3AG290200 Rh3BG327300 Rh3BG327400 Rh3CG324700 Rh3DG323300
rosa_wichuraiana	Rw3G025720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	2 cut(s)	3, 150
AfaI	GTAC	1 cut(s)	160
AflIII	ACRYGT	1 cut(s)	197
AgsI	TTSAA	3 cut(s)	32, 62, 177
AluBI	AGCT	2 cut(s)	112, 119
AluI	AGCT	2 cut(s)	112, 119
AoxI	GGCC	2 cut(s)	3, 150
BalI	TGGCCA	2 cut(s)	5, 152
BccI	CCATC	1 cut(s)	14
BfaI	CTAG	1 cut(s)	220
BpuEI	CTTGAG	1 cut(s)	95
BshFI	GGCC	2 cut(s)	5, 152
BsnI	GGCC	2 cut(s)	5, 152
BspANI	GGCC	2 cut(s)	5, 152
BstNSI	RCATGY	1 cut(s)	201
BsuRI	GGCC	2 cut(s)	5, 152
Csp6I	GTAC	1 cut(s)	159
CviAII	CATG	4 cut(s)	154, 163, 185, 198
CviJI	RGCY	5 cut(s)	5, 80, 112, 119, 152
CviKI_1	RGCY	5 cut(s)	5, 80, 112, 119, 152
CviQI	GTAC	1 cut(s)	159
EaeI	YGGCCR	2 cut(s)	3, 150
FaeI	CATG	4 cut(s)	157, 166, 188, 201
FaiI	YATR	9 cut(s)	85, 87, 108, 143, 155, 164, 181, 186, 199
FatI	CATG	4 cut(s)	153, 162, 184, 197
FauNDI	CATATG	1 cut(s)	85
FspBI	CTAG	1 cut(s)	220
HaeIII	GGCC	2 cut(s)	5, 152
Hin1II	CATG	4 cut(s)	157, 166, 188, 201
HpyCH4V	TGCA	1 cut(s)	166
Hsp92II	CATG	4 cut(s)	157, 166, 188, 201
LmnI	GCTCC	2 cut(s)	116, 193
LpnPI	CCDG	1 cut(s)	26
MaeI	CTAG	1 cut(s)	220
MaeIII	GTNAC	2 cut(s)	36, 208
MlsI	TGGCCA	2 cut(s)	5, 152
MluCI	AATT	1 cut(s)	103
MluNI	TGGCCA	2 cut(s)	5, 152
MnlI	CCTC	3 cut(s)	7, 70, 119
Mox20I	TGGCCA	2 cut(s)	5, 152
MscI	TGGCCA	2 cut(s)	5, 152
MseI	TTAA	1 cut(s)	102
MslI	CAYNNNNRTG	1 cut(s)	146
Msp20I	TGGCCA	2 cut(s)	5, 152
NdeI	CATATG	1 cut(s)	85
NlaIII	CATG	4 cut(s)	157, 166, 188, 201
NmuCI	GTSAC	1 cut(s)	208
NspI	RCATGY	1 cut(s)	201
PciI	ACATGT	1 cut(s)	197
PscI	ACATGT	1 cut(s)	197
RsaI	GTAC	1 cut(s)	160
RsaNI	GTAC	1 cut(s)	159
RseI	CAYNNNNRTG	1 cut(s)	146
SaqAI	TTAA	1 cut(s)	102
SetI	ASST	4 cut(s)	45, 114, 121, 130
SgeI	CNNG	8 cut(s)	53, 86, 125, 166, 175, 197, 204, 210
SmiMI	CAYNNNNRTG	1 cut(s)	146
SmlI	CTYRAG	1 cut(s)	74
SmoI	CTYRAG	1 cut(s)	74
Sse9I	AATT	1 cut(s)	103
SspMI	CTAG	1 cut(s)	220
TasI	AATT	1 cut(s)	103
Tru1I	TTAA	1 cut(s)	102
Tru9I	TTAA	1 cut(s)	102
TseFI	GTSAC	1 cut(s)	208
Tsp45I	GTSAC	1 cut(s)	208
XceI	RCATGY	1 cut(s)	201
XspI	CTAG	1 cut(s)	220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.