Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0006882

Physical Location & Seq

Genomic Coordinates Forward (+)

35455371 .. 35456314

Gene Structure 944 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1277900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGATCTTGGGCTACTCCCCATATTGCCAATTGGTTTTATGGTGGAACCCCAATTTCATCAAATTGTCCGAAGTGAACAACAGTGGGGTTCGAGTCTCTGTCTGTAAGAGTGCAGAATCAAGACAGCATGGCATGATCGTCAGTGTTGCTACTTCTCTTTGGCTTCCTCTACCATCCGAAACTGTCTTTAACTTCTTCAAAGATGAGAAAAATAGAGTTCAGTGGGATGTTCTGTCTAATGGAAATCCAGTGCATGAGATTGCAAACATTTCAACTAGAACGCATCCAGGAGATTGTATATGTGTCATTCGGCCTATGTTTTTGCTTTATAAACAGTTCAGTTTGATCTCAATGGTTTCTGTGGAGCACCCTTTCATCAACACCGAGAATAACATGTCGATGCTTCAAGAAAGTTACACAGACCCTTTGGGATCCTTATTTGTATATGCTCAAGTCGACATACCAGCTCTTAACGTAGCAGTAAGTGGTGAGGACTCTTCCAACATACCTATCCTCCTATCAGGGTTTGTGATATCAGGTGATGGCCGTGCTGAAATAACTGGGGATTCAGGCAATTCCAGGGTAGGTGGTTCACTTCTTACAGTGGCTTTCCAGATATTGGTTTCTAGCCCCTCAATTTCAAAGCAGATGAACATGGAGTCGGTGGCAACTGTCAACACTCTCATTAGTTCCACCGTTCAAAAGATCCAAGTTGCTCTCAACTGCTCGAGCTTTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox START

Protein Analysis

247

Amino Acids

26.94

Weight (kDa)

5.18

Isoelectric Point (pI)

39.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PDF2_C	PF25797	17 - 106	4.3e-31	PDF2-like, C-terminal domain
PDF2_C	PF25797	118 - 242	6.6e-47	PDF2-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006882)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03260 AT3G03260
fragaria_vesca	FvH4_1g27700
malus_domestica	MD09G1277500.v1.1 MD09G1277600.v1.1 MD09G1277900.v1.1 MD17G1271000.v1.1 MD17G1271100.v1.1
prunus_persica	Prupe.3G015300_v2.0.a1
pyrus_communis	pycom09g18690 pycom09g18700 pycom09g18710 pycom17g26940
rosa_chinensis	RchiOBHm_Chr3g0488861
rosa_laevigata	RLG00000022916
rosa_multiflora	Rmu_sc0001208.1_g000028
rosa_roxburghii	Rroxscaffold_6G00393800 Rroxscaffold_6G00393810
rosa_rugosa	Rorug03G0242100 Rorug03G0242200
rosa_samantha	Rh3AG290200 Rh3BG327300 Rh3BG327400 Rh3CG324700 Rh3DG323300
rosa_wichuraiana	Rw3G025720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	330
AccB7I	CCANNNNNTGG	1 cut(s)	619
AccI	GTMKAC	1 cut(s)	456
AclWI	GGATC	3 cut(s)	426, 439, 700
AcoI	YGGCCR	1 cut(s)	544
AfiI	CCNNNNNNNGG	1 cut(s)	619
AflIII	ACRYGT	1 cut(s)	393
AgsI	TTSAA	5 cut(s)	199, 273, 407, 642, 701
AjnI	CCWGG	2 cut(s)	286, 578
AluBI	AGCT	2 cut(s)	467, 732
AluI	AGCT	2 cut(s)	467, 732
Alw21I	GWGCWC	1 cut(s)	369
Alw26I	GTCTC	1 cut(s)	100
AlwI	GGATC	3 cut(s)	426, 439, 700
Ama87I	CYCGRG	1 cut(s)	727
AoxI	GGCC	2 cut(s)	311, 544
AsuHPI	GGTGA	2 cut(s)	500, 551
AvaI	CYCGRG	1 cut(s)	727
BamHI	GGATCC	1 cut(s)	431
Bbv12I	GWGCWC	1 cut(s)	369
BccI	CCATC	2 cut(s)	181, 536
BceAI	ACGGC	1 cut(s)	531
BciT130I	CCWGG	2 cut(s)	288, 580
BcoDI	GTCTC	1 cut(s)	100
BfaI	CTAG	2 cut(s)	276, 627
Bme1390I	CCNGG	2 cut(s)	288, 580
BmeT110I	CYCGRG	1 cut(s)	727
BmiI	GGNNCC	2 cut(s)	47, 433
BmrFI	CCNGG	2 cut(s)	288, 580
BmrI	ACTGGG	1 cut(s)	570
BmsI	GCATC	2 cut(s)	292, 390
BmuI	ACTGGG	1 cut(s)	570
BpuEI	CTTGAG	1 cut(s)	435
BsaJI	CCNNGG	1 cut(s)	579
BsaXI	ACNNNNNCTCC	2 cut(s)	498, 528
Bsc4I	CCNNNNNNNGG	1 cut(s)	619
Bse1I	ACTGG	2 cut(s)	248, 565
BseBI	CCWGG	2 cut(s)	288, 580
BseDI	CCNNGG	1 cut(s)	579
BseGI	GGATG	3 cut(s)	173, 232, 283
BseLI	CCNNNNNNNGG	1 cut(s)	619
BseNI	ACTGG	2 cut(s)	248, 565
BsgI	GTGCAG	1 cut(s)	132
BshFI	GGCC	2 cut(s)	313, 546
BsiHKAI	GWGCWC	1 cut(s)	369
BsiHKCI	CYCGRG	1 cut(s)	727
BslI	CCNNNNNNNGG	1 cut(s)	619
BsmAI	GTCTC	1 cut(s)	100
BsnI	GGCC	2 cut(s)	313, 546
BsoBI	CYCGRG	1 cut(s)	727
Bsp1286I	GDGCHC	1 cut(s)	369
Bsp143I	GATC	5 cut(s)	3, 135, 345, 431, 705
BspANI	GGCC	2 cut(s)	313, 546
BspLI	GGNNCC	2 cut(s)	47, 433
BspPI	GGATC	3 cut(s)	426, 439, 700
BsrI	ACTGG	2 cut(s)	248, 565
BssECI	CCNNGG	1 cut(s)	579
BssMI	GATC	5 cut(s)	3, 135, 345, 431, 705
Bst2UI	CCWGG	2 cut(s)	288, 580
Bst4CI	ACNGT	6 cut(s)	83, 184, 336, 604, 673, 697
Bst6I	CTCTTC	1 cut(s)	502
BstF5I	GGATG	3 cut(s)	173, 232, 283
BstKTI	GATC	5 cut(s)	6, 138, 348, 434, 708
BstMAI	GTCTC	1 cut(s)	100
BstMBI	GATC	5 cut(s)	3, 135, 345, 431, 705
BstNI	CCWGG	2 cut(s)	288, 580
BstNSI	RCATGY	1 cut(s)	397
BstSCI	CCNGG	2 cut(s)	286, 578
BstX2I	RGATCY	2 cut(s)	431, 705
BstYI	RGATCY	2 cut(s)	431, 705
BsuRI	GGCC	2 cut(s)	313, 546
BtsCI	GGATG	3 cut(s)	173, 232, 283
BtsIMutI	CAGTG	5 cut(s)	88, 148, 227, 255, 609
CviAII	CATG	5 cut(s)	128, 133, 254, 394, 655
CviJI	RGCY	8 cut(s)	12, 163, 313, 467, 546, 608, 630, 732
CviKI_1	RGCY	8 cut(s)	12, 163, 313, 467, 546, 608, 630, 732
DpnI	GATC	5 cut(s)	5, 137, 347, 433, 707
DpnII	GATC	5 cut(s)	3, 135, 345, 431, 705
EaeI	YGGCCR	1 cut(s)	544
Eam1104I	CTCTTC	1 cut(s)	502
EarI	CTCTTC	1 cut(s)	502
Eco32I	GATATC	1 cut(s)	534
Eco88I	CYCGRG	1 cut(s)	727
EcoRII	CCWGG	2 cut(s)	286, 578
EcoRV	GATATC	1 cut(s)	534
FaeI	CATG	5 cut(s)	131, 136, 257, 397, 658
FatI	CATG	5 cut(s)	127, 132, 253, 393, 654
FblI	GTMKAC	1 cut(s)	456
FokI	GGATG	3 cut(s)	160, 239, 270
FspBI	CTAG	2 cut(s)	276, 627
HaeIII	GGCC	2 cut(s)	313, 546
Hin1II	CATG	5 cut(s)	131, 136, 257, 397, 658
HincII	GTYRAC	2 cut(s)	457, 676
HindII	GTYRAC	2 cut(s)	457, 676
HinfI	GANTC	5 cut(s)	93, 116, 494, 566, 659
HphI	GGTGA	2 cut(s)	500, 551
Hpy166II	GTNNAC	4 cut(s)	76, 457, 593, 676
Hpy188I	TCNGA	2 cut(s)	70, 178
Hpy188III	TCNNGA	3 cut(s)	120, 407, 613
Hpy8I	GTNNAC	4 cut(s)	76, 457, 593, 676
HpyCH4III	ACNGT	6 cut(s)	83, 184, 336, 604, 673, 697
HpyCH4IV	ACGT	1 cut(s)	474
HpyCH4V	TGCA	3 cut(s)	113, 253, 263
HpySE526I	ACGT	1 cut(s)	474
Hsp92II	CATG	5 cut(s)	131, 136, 257, 397, 658
Kzo9I	GATC	5 cut(s)	3, 135, 345, 431, 705
LmnI	GCTCC	1 cut(s)	364
LweI	GCATC	2 cut(s)	292, 390
MaeI	CTAG	2 cut(s)	276, 627
MaeII	ACGT	1 cut(s)	474
MaeIII	GTNAC	1 cut(s)	413
MalI	GATC	5 cut(s)	5, 137, 347, 433, 707
MboI	GATC	5 cut(s)	3, 135, 345, 431, 705
MboII	GAAGA	2 cut(s)	187, 489
MfeI	CAATTG	1 cut(s)	29
MflI	RGATCY	2 cut(s)	431, 705
MhlI	GDGCHC	1 cut(s)	369
MluCI	AATT	5 cut(s)	29, 52, 62, 574, 636
MlyI	GAGTC	3 cut(s)	102, 488, 668
MmeI	TCCRAC	1 cut(s)	525
MnlI	CCTC	4 cut(s)	177, 484, 524, 643
MseI	TTAA	3 cut(s)	189, 471, 739
MslI	CAYNNNNRTG	1 cut(s)	398
MspR9I	CCNGG	2 cut(s)	288, 580
MunI	CAATTG	1 cut(s)	29
MvaI	CCWGG	2 cut(s)	288, 580
NdeII	GATC	5 cut(s)	3, 135, 345, 431, 705
NlaIII	CATG	5 cut(s)	131, 136, 257, 397, 658
NlaIV	GGNNCC	2 cut(s)	47, 433
NspI	RCATGY	1 cut(s)	397
PaeR7I	CTCGAG	1 cut(s)	727
PciI	ACATGT	1 cut(s)	393
PfeI	GAWTC	2 cut(s)	116, 566
PflMI	CCANNNNNTGG	1 cut(s)	619
PfoI	TCCNGGA	1 cut(s)	286
PleI	GAGTC	3 cut(s)	101, 488, 667
PpsI	GAGTC	3 cut(s)	101, 488, 667
PscI	ACATGT	1 cut(s)	393
PsiI	TTATAA	1 cut(s)	330
Psp6I	CCWGG	2 cut(s)	286, 578
PspGI	CCWGG	2 cut(s)	286, 578
PspN4I	GGNNCC	2 cut(s)	47, 433
PspXI	VCTCGAGB	1 cut(s)	727
PsuI	RGATCY	2 cut(s)	431, 705
RseI	CAYNNNNRTG	1 cut(s)	398
SalI	GTCGAC	1 cut(s)	455
SaqAI	TTAA	3 cut(s)	189, 471, 739
Sau3AI	GATC	5 cut(s)	3, 135, 345, 431, 705
SchI	GAGTC	3 cut(s)	102, 488, 668
ScrFI	CCNGG	2 cut(s)	288, 580
SduI	GDGCHC	1 cut(s)	369
SetI	ASST	6 cut(s)	469, 477, 511, 541, 589, 734
SfaNI	GCATC	2 cut(s)	292, 390
Sfr274I	CTCGAG	1 cut(s)	727
SlaI	CTCGAG	1 cut(s)	727
SmiMI	CAYNNNNRTG	1 cut(s)	398
SmlI	CTYRAG	2 cut(s)	450, 727
SmoI	CTYRAG	2 cut(s)	450, 727
Sse9I	AATT	5 cut(s)	29, 52, 62, 574, 636
SspMI	CTAG	2 cut(s)	276, 627
StyD4I	CCNGG	2 cut(s)	286, 578
TaaI	ACNGT	6 cut(s)	83, 184, 336, 604, 673, 697
TaiI	ACGT	1 cut(s)	477
TaqI	TCGA	4 cut(s)	91, 398, 456, 728
TasI	AATT	5 cut(s)	29, 52, 62, 574, 636
TfiI	GAWTC	2 cut(s)	116, 566
Tru1I	TTAA	3 cut(s)	189, 471, 739
Tru9I	TTAA	3 cut(s)	189, 471, 739
TscAI	CASTG	5 cut(s)	88, 148, 227, 255, 609
TspDTI	ATGAA	3 cut(s)	46, 364, 665
TspRI	CASTG	5 cut(s)	88, 148, 227, 255, 609
Van91I	CCANNNNNTGG	1 cut(s)	619
XceI	RCATGY	1 cut(s)	397
XhoI	CTCGAG	1 cut(s)	727
XmiI	GTMKAC	1 cut(s)	456
XspI	CTAG	2 cut(s)	276, 627

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.