Rh3BG327300

Homeobox-leucine zipper protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0006882
Physical Location & Seq
Reverse (-)
34117383 .. 34119593
2211 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG327300.1

Sequence Viewer

Length: 942 bp
ATGCCAAATGGATGCTCTAAGGTAACTTGGGTTGAACACGTGGAAGTCGATGACAAGACACAAACTCATCGGCTCTATAGAGATCTTGTGTGTGGTAGCGTCGCATATGGAGCACAAAGATGGATTGTTACTCTCCAGAGGATGTGTGAAAGATTTGGTTGCTCATTCGATGACGTTTCATCTAGTAGTGAATTTGGAGCAATGTTTGCTATGCCCGAAGGCAGAAGTAGCATAATGAAGCTTTCCCACAGGATGGTTAAGAACTTTTGTGGAATGTTGAGCATGTCAGGAAAGCTTGATTTCCCTCAACTATCAGAAGTGAATAATAGCGGGGTTCGAGTCAATGTTCGTAAAAGCATAGAACCAGGCGAGCCCAGTGGCATGGTCGTCGCTGCTGCTACTTCTCTATGGCTTCCTCTACATTCCCAAGACGTCTTTAACTTCTTCACAAATGAAAAAACAAGAGTGCAGTGGGATGTCCTCTCTAACGGAAATCCAATGAATGTGATTGCACACATTCCAACTGGAGCTCATCCAGGAAACTGTATTTCTATTATTCAGCCTTTTGTACCGACAGAGGGTAATATGCTTCTTTTGCAAGAAAGTTATATAGACACTTTGGGGTCTATGGTTATCTATGCTCCTGTCGAGGTAGCTACTATCAATATAGCAGTCGGGGGTGAGGTTGACTCTTCTGACATTCCCATACTTCCCTCGGGGTTCGTAATCTCAGATGATGGTCGTCCTGATACTGGGACTTCGAGCAGCACAAACCCTGCCAGATCAGGTGGTTCACTCCTTACAGTGGCTTTCCAGATATTGGTTCCCTTCCCTTCACCTTCACAAGTGCTGAACGTTGAGTCCGTGGCAACTGTCAATACTCTTATTAGTTTGACTGTTCAAAAAATAAAAACTGCTCTCAATTGCGCTGGCTTGGATTAA

Protein Analysis

313

Amino Acids

33.77

Weight (kDa)

5.25

Isoelectric Point (pI)

38.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDF2_C PF25797 72 - 309 7.9e-103 PDF2-like, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 435
AccB7I CCANNNNNTGG 2 cut(s) 253, 820
AciI CCGC 1 cut(s) 330
AclI AACGTT 1 cut(s) 855
AcsI RAATTY 1 cut(s) 191
AcvI CACGTG 1 cut(s) 40
AcyI GRCGYC 1 cut(s) 432
AfaI GTAC 1 cut(s) 570
AfiI CCNNNNNNNGG 5 cut(s) 253, 578, 752, 805, 820
AflIII ACRYGT 1 cut(s) 37
AgsI TTSAA 2 cut(s) 35, 902
AjnI CCWGG 2 cut(s) 364, 535
AloI GAACNNNNNNTCC 2 cut(s) 845, 877
AluBI AGCT 4 cut(s) 241, 295, 530, 656
AluI AGCT 4 cut(s) 241, 295, 530, 656
Alw21I GWGCWC 2 cut(s) 115, 532
Ama87I CYCGRG 1 cut(s) 715
ApeKI GCWGC 3 cut(s) 392, 395, 765
ApoI RAATTY 1 cut(s) 191
AspLEI GCGC 1 cut(s) 929
AsuHPI GGTGA 2 cut(s) 692, 828
AvaI CYCGRG 1 cut(s) 715
BanII GRGCYC 2 cut(s) 375, 532
BbrPI CACGTG 1 cut(s) 40
Bbv12I GWGCWC 2 cut(s) 115, 532
BbvI GCAGC 3 cut(s) 379, 382, 777
BccI CCATC 3 cut(s) 114, 247, 731
BcgI CGANNNNNNTGC 2 cut(s) 370, 404
BciT130I CCWGG 2 cut(s) 366, 537
BfaI CTAG 1 cut(s) 183
BfmI CTRYAG 1 cut(s) 76
BglII AGATCT 1 cut(s) 82
BisI GCNGC 3 cut(s) 393, 396, 766
BlsI GCNGC 3 cut(s) 394, 397, 767
Bme1390I CCNGG 2 cut(s) 366, 537
BmeT110I CYCGRG 1 cut(s) 715
BmiI GGNNCC 1 cut(s) 825
BmrFI CCNGG 2 cut(s) 366, 537
BmrI ACTGGG 2 cut(s) 369, 762
BmsI GCATC 1 cut(s) 2
BmuI ACTGGG 2 cut(s) 369, 762
BplI GAGNNNNNCTC 2 cut(s) 674, 706
BpmI CTGGAG 2 cut(s) 119, 546
BsaAI YACGTR 1 cut(s) 40
BsaHI GRCGYC 1 cut(s) 432
BsaJI CCNNGG 2 cut(s) 714, 864
Bsc4I CCNNNNNNNGG 5 cut(s) 253, 578, 752, 805, 820
Bse1I ACTGG 3 cut(s) 375, 529, 757
Bse3DI GCAATG 1 cut(s) 207
BseBI CCWGG 2 cut(s) 366, 537
BseDI CCNNGG 2 cut(s) 714, 864
BseGI GGATG 5 cut(s) 17, 147, 258, 481, 532
BseLI CCNNNNNNNGG 5 cut(s) 253, 578, 752, 805, 820
BseMI GCAATG 1 cut(s) 207
BseMII CTCAG 1 cut(s) 744
BseNI ACTGG 3 cut(s) 375, 529, 757
BseXI GCAGC 3 cut(s) 379, 382, 777
BsgI GTGCAG 1 cut(s) 488
BsiHKAI GWGCWC 2 cut(s) 115, 532
BsiHKCI CYCGRG 1 cut(s) 715
BslFI GGGAC 1 cut(s) 769
BslI CCNNNNNNNGG 5 cut(s) 253, 578, 752, 805, 820
BsmFI GGGAC 1 cut(s) 769
BsoBI CYCGRG 1 cut(s) 715
Bsp1286I GDGCHC 3 cut(s) 115, 375, 532
Bsp143I GATC 2 cut(s) 82, 782
BspACI CCGC 1 cut(s) 330
BspCNI CTCAG 1 cut(s) 743
BspLI GGNNCC 1 cut(s) 825
BsrDI GCAATG 1 cut(s) 207
BsrI ACTGG 3 cut(s) 375, 529, 757
BssECI CCNNGG 2 cut(s) 714, 864
BssMI GATC 2 cut(s) 82, 782
BssNI GRCGYC 1 cut(s) 432
Bst2UI CCWGG 2 cut(s) 366, 537
Bst4CI ACNGT 4 cut(s) 545, 805, 874, 898
Bst6I CTCTTC 1 cut(s) 697
BstACI GRCGYC 1 cut(s) 432
BstAPI GCANNNNNTGC 1 cut(s) 206
BstBAI YACGTR 1 cut(s) 40
BstC8I GCNNGC 2 cut(s) 371, 931
BstDEI CTNAG 2 cut(s) 18, 730
BstDSI CCRYGG 1 cut(s) 864
BstF5I GGATG 5 cut(s) 17, 147, 258, 481, 532
BstHHI GCGC 1 cut(s) 929
BstKTI GATC 2 cut(s) 85, 785
BstMBI GATC 2 cut(s) 82, 782
BstMWI GCNNNNNNNGC 4 cut(s) 110, 206, 228, 595
BstNI CCWGG 2 cut(s) 366, 537
BstNSI RCATGY 1 cut(s) 286
BstSCI CCNGG 2 cut(s) 364, 535
BstSFI CTRYAG 1 cut(s) 76
BstV1I GCAGC 3 cut(s) 379, 382, 777
BstX2I RGATCY 1 cut(s) 82
BstXI CCANNNNNNTGG 1 cut(s) 382
BstYI RGATCY 1 cut(s) 82
BtgI CCRYGG 1 cut(s) 864
BtsCI GGATG 5 cut(s) 17, 147, 258, 481, 532
BtsI GCAGTG 1 cut(s) 476
BtsIMutI CAGTG 3 cut(s) 382, 476, 810
Cac8I GCNNGC 2 cut(s) 371, 931
CfoI GCGC 1 cut(s) 929
CseI GACGC 1 cut(s) 88
Csp6I GTAC 1 cut(s) 569
CviAII CATG 2 cut(s) 283, 382
CviQI GTAC 1 cut(s) 569
DdeI CTNAG 2 cut(s) 18, 730
DpnI GATC 2 cut(s) 84, 784
DpnII GATC 2 cut(s) 82, 782
Eam1104I CTCTTC 1 cut(s) 697
EarI CTCTTC 1 cut(s) 697
Ecl136II GAGCTC 1 cut(s) 530
Eco24I GRGCYC 2 cut(s) 375, 532
Eco53kI GAGCTC 1 cut(s) 530
Eco72I CACGTG 1 cut(s) 40
Eco88I CYCGRG 1 cut(s) 715
EcoICRI GAGCTC 1 cut(s) 530
EcoRII CCWGG 2 cut(s) 364, 535
EcoT38I GRGCYC 2 cut(s) 375, 532
FaeI CATG 2 cut(s) 286, 385
FaqI GGGAC 1 cut(s) 769
FatI CATG 2 cut(s) 282, 381
FauI CCCGC 1 cut(s) 323
FauNDI CATATG 1 cut(s) 106
Fnu4HI GCNGC 3 cut(s) 393, 396, 766
FokI GGATG 5 cut(s) 24, 154, 265, 488, 519
FriOI GRGCYC 2 cut(s) 375, 532
Fsp4HI GCNGC 3 cut(s) 393, 396, 766
FspBI CTAG 1 cut(s) 183
GlaI GCGC 1 cut(s) 928
GluI GCNGC 3 cut(s) 393, 396, 766
GsuI CTGGAG 2 cut(s) 119, 546
HgaI GACGC 1 cut(s) 88
HhaI GCGC 1 cut(s) 929
Hin1I GRCGYC 1 cut(s) 432
Hin1II CATG 2 cut(s) 286, 385
Hin6I GCGC 1 cut(s) 927
HinP1I GCGC 1 cut(s) 927
HincII GTYRAC 1 cut(s) 688
HindII GTYRAC 1 cut(s) 688
HindIII AAGCTT 2 cut(s) 239, 293
HinfI GANTC 3 cut(s) 339, 689, 860
HphI GGTGA 2 cut(s) 692, 828
Hpy166II GTNNAC 2 cut(s) 688, 794
Hpy188I TCNGA 3 cut(s) 316, 697, 733
Hpy188III TCNNGA 4 cut(s) 136, 288, 746, 814
Hpy8I GTNNAC 2 cut(s) 688, 794
Hpy99I CGWCG 2 cut(s) 104, 392
HpyAV CCTTC 4 cut(s) 212, 838, 843, 849
HpyCH4III ACNGT 4 cut(s) 545, 805, 874, 898
HpyCH4IV ACGT 4 cut(s) 39, 174, 432, 855
HpyCH4V TGCA 3 cut(s) 469, 512, 598
HpyF10VI GCNNNNNNNGC 4 cut(s) 110, 206, 228, 595
HpyF3I CTNAG 2 cut(s) 18, 730
HpySE526I ACGT 4 cut(s) 39, 174, 432, 855
Hsp92I GRCGYC 1 cut(s) 432
Hsp92II CATG 2 cut(s) 286, 385
HspAI GCGC 1 cut(s) 927
Kzo9I GATC 2 cut(s) 82, 782
LmnI GCTCC 4 cut(s) 110, 197, 527, 646
Lsp1109I GCAGC 3 cut(s) 379, 382, 777
LweI GCATC 1 cut(s) 2
MaeI CTAG 1 cut(s) 183
MaeII ACGT 4 cut(s) 39, 174, 432, 855
MaeIII GTNAC 2 cut(s) 22, 127
MalI GATC 2 cut(s) 84, 784
MboI GATC 2 cut(s) 82, 782
MboII GAAGA 2 cut(s) 436, 684
MfeI CAATTG 1 cut(s) 922
MflI RGATCY 1 cut(s) 82
MhlI GDGCHC 3 cut(s) 115, 375, 532
MluCI AATT 2 cut(s) 191, 922
MlyI GAGTC 3 cut(s) 348, 683, 869
MmeI TCCRAC 1 cut(s) 545
MnlI CCTC 8 cut(s) 132, 315, 426, 491, 571, 643, 676, 724
MseI TTAA 3 cut(s) 258, 438, 940
MslI CAYNNNNRTG 1 cut(s) 118
MspR9I CCNGG 2 cut(s) 366, 537
MunI CAATTG 1 cut(s) 922
MvaI CCWGG 2 cut(s) 366, 537
MwoI GCNNNNNNNGC 4 cut(s) 110, 206, 228, 595
NdeI CATATG 1 cut(s) 106
NdeII GATC 2 cut(s) 82, 782
NlaIII CATG 2 cut(s) 286, 385
NlaIV GGNNCC 1 cut(s) 825
NspI RCATGY 1 cut(s) 286
PcsI WCGNNNNNNNCGW 2 cut(s) 45, 861
PflMI CCANNNNNTGG 2 cut(s) 253, 820
PfoI TCCNGGA 1 cut(s) 535
PkrI GCNGC 3 cut(s) 394, 397, 767
PleI GAGTC 3 cut(s) 347, 683, 868
PmaCI CACGTG 1 cut(s) 40
PmlI CACGTG 1 cut(s) 40
PpsI GAGTC 3 cut(s) 347, 683, 868
Ppu21I YACGTR 1 cut(s) 40
Psp124BI GAGCTC 1 cut(s) 532
Psp1406I AACGTT 1 cut(s) 855
Psp6I CCWGG 2 cut(s) 364, 535
PspCI CACGTG 1 cut(s) 40
PspGI CCWGG 2 cut(s) 364, 535
PspN4I GGNNCC 1 cut(s) 825
PsuI RGATCY 1 cut(s) 82
RsaI GTAC 1 cut(s) 570
RsaNI GTAC 1 cut(s) 569
RseI CAYNNNNRTG 1 cut(s) 118
SacI GAGCTC 1 cut(s) 532
SaqAI TTAA 3 cut(s) 258, 438, 940
SatI GCNGC 3 cut(s) 393, 396, 766
Sau3AI GATC 2 cut(s) 82, 782
SchI GAGTC 3 cut(s) 348, 683, 869
ScrFI CCNGG 2 cut(s) 366, 537
SduI GDGCHC 3 cut(s) 115, 375, 532
SfaNI GCATC 1 cut(s) 2
SfcI CTRYAG 1 cut(s) 76
SmiMI CAYNNNNRTG 1 cut(s) 118
Sse9I AATT 2 cut(s) 191, 922
SsiI CCGC 1 cut(s) 330
SspMI CTAG 1 cut(s) 183
SstI GAGCTC 1 cut(s) 532
StyD4I CCNGG 2 cut(s) 364, 535
TaaI ACNGT 4 cut(s) 545, 805, 874, 898
TaiI ACGT 4 cut(s) 42, 177, 435, 858
TaqI TCGA 5 cut(s) 48, 168, 337, 648, 761
TasI AATT 2 cut(s) 191, 922
Tru1I TTAA 3 cut(s) 258, 438, 940
Tru9I TTAA 3 cut(s) 258, 438, 940
TscAI CASTG 3 cut(s) 382, 476, 810
TseI GCWGC 3 cut(s) 392, 395, 765
TspDTI ATGAA 4 cut(s) 168, 251, 468, 515
TspGWI ACGGA 2 cut(s) 504, 853
TspRI CASTG 3 cut(s) 382, 476, 810
Van91I CCANNNNNTGG 2 cut(s) 253, 820
XapI RAATTY 1 cut(s) 191
XceI RCATGY 1 cut(s) 286
XspI CTAG 1 cut(s) 183
ZraI GACGTC 1 cut(s) 433
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.